Lag0024265 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024265
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	chr10: 1730341 .. 1732937 (+)
RNA-Seq Expression	Lag0024265
Synteny	Lag0024265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTCCACCCAACCATTTCTTCAATCCGAGCAGGCCAGGTATTCATAGTTCTAGGAATTTTCTTCGCTAATCAATTTATCTGTAATTCTTTCGGTTGTGGTTTCTGTGTCCTTAATCCAAATTTAGAGGAAAATATTTTGAGAAGTTTCGCTTCGTTGCTGAATATTTTGCTCAATTCCTGGCTTTGTGGAGAGACCGAAGCTTTTGGCTCCTGTCTGAGTAGGATAAAGATTATTTACCGGGAAAATATTCGTATCATTTGCACGTTGAATGATAATTTTCCAGTTTGTATGGATTTTATTTTTCTGGAAGAGGGAAACAAAGTGTTGCATTATGGGGGGAAAACTACAAATGGAACGAAATAGTGCAAAGGAAGATCTGAAGCTGTTTGTTTGTGTGTTTGAGTGTATGGTGCAGTAGTATAATACTATAGTGCTTACATGATTGTTTATTAAAATCTTGTATAGGTGACATGAGTGCACGACATTCACATAACTCTAGGCATTCTAAACTTTTTCTGGAGTAGTATTAAGTTGGAGGAACGGGATGTATGCTTCAGGTTATGTGGATGCAATACTTTACGGTTTACCTCTCTTAGGCGTGTCCTGGTGGCAAGGAATGACGATGTCCGGTGGTATCCTTCTAAGTTCTAAGTTCAAGTCTCCGGGCTAAAAATCTAATAACTTAAAATCTTTTTTTGTCTTCTAGAGTTGGCTTTGGAGTGGGCAAAAATTCCGATCAGTGAGGTGGGCCATGAGCATGATGTAAGGAGTGAGAATACTTCGATTATTAAAAAGAAGTGACTAAACATAGCATCTTGTAAACATTTCGTACTAACATTTTAAAGTTGGCCTAGGGCTTAGAGTGAATAAGTTCAAGCCATGACGGTCACCTCCCTAGAATTTAGTATCCTACGAGTTACCTTGGCGACTAGATGTAGTAGGGTCATGCGGTTTTCTTGTGAAAATAATCGAGGTGCGTGTAAGTTGACCCTGACACTCACGGATATTTAAAAAAAAAAAAATTCAAAATATAGGGAACAACACGAGACTAGCAAGAAGGCTAGTACTTTTTATTTTTTATAAAAATGAATAGTTTAGCTACAACAACAACAATTTATTTTTTATTTATTTTTTTATTTAAAAAAGACCTGATCTTCTACTTCACTTGTACTTTTTATCCATATTATTGCAGAGAGTTTTGAGACAAATATCCATAATTTACTAGAACTGCTATTAGAATTGCTGCTTAGCGAATAGTTTTCATTAGAAACAGAGGTGCAAGTTTAAAGGTGCGGCAGAGTGGACCTTAAGTGGATTGTGGATATTGATGAAGTTTGTTTGGAATTCTTTGGAAAAGTTAGTTTCTTTCTGTAAGAGGTGGTAGATTATACATGAATGTTGTTTAAGCTCAGATTTCATGTGATTGTTGTTTATATATAGTCTATTGACGATTTATCTTCTTGGTGTCTATTCATTGACAACACTGATGTCTTATACTAGACCTATGAAATTGTGATGGATTAAACGCTCGTGTAAGATTGAAATGTTCGTTTTGGTTGTACTTGGAACAACTGTTATATGAACTCTTCAAAAGAAAGACTAGTATGTGTTGTGAACCATACTTGTTACTTAGGGAATCATCCAAATGGATTTCTCCATAAAAAAGTTGAAATCTTTATATCCTCTTCAAGAAATCTTTAAATTTCTAGTTTAAGTGAAACATTAATAGCCTATTTGAAACGTATATGTTCTTGGATAATCTTGGACAACAAACTGTTGGTGATTGTTAAATTTCACCTGGTCCGTAAACTGATTTTGTTAGAATTTAGAGTCTAGGCTGCATTTAACTTAGAACTTCTTGCATGTAACATATGGCCAAAAAATGAACATTAAGTATTGTATCCATGGATCTGAGTCAGATTTGGTTGCAATTTTCATAATTACCATACATTTTTTTACATGCAAAGGTGTGGATGCTGCTCCTGCTCCTATTGTTCGTTTGAACTTGCACGACATGCTTATACAGTATTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGCTTTCAGTTGCTGAGCTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACGACACCTGGCCGTGAATCTGAGTTTGATGTTAGGTATAAAACAGTTCTCCTTTGAATGTCACGTCTAAGCAACTAAAGATCTATATGCATTAGAGAAGGTTCAGCTTCCAAAATAATTTTGATCTTCAGGAAATCAAGGAAAACTGCTCCGCCTTACCGAGTGTTGCTACACAACGACAATTACAACAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAGGCACACTACAATGGGATGTCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGACGGTTGTTGA

mRNA sequence

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTCCACCCAACCATTTCTTCAATCCGAGCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGCTTTCAGTTGCTGAGCTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACGACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTACCGAGTGTTGCTACACAACGACAATTACAACAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAGGCACACTACAATGGGATGTCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGACGGTTGTTGA

Coding sequence (CDS)

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTCCACCCAACCATTTCTTCAATCCGAGCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGCTTTCAGTTGCTGAGCTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACGACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTACCGAGTGTTGCTACACAACGACAATTACAACAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAGGCACACTACAATGGGATGTCAGTGGTAATTATCTGCGCTCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGACGGTTGTTGA

Protein sequence

MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Homology

[Close]

BLAST of Lag0024265 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 320.5 bits (820), Expect = 8.3e-84
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPL PNHFFN +RPGDKYYFHKQCRNRS LMMLSVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Lag0024265 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 311.2 bits (796), Expect = 5.0e-81
Identity = 148/158 (93.67%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEK 60
           MEAAICGRV L PNHFF+ ++PGDKYYFHKQCRNRS+LMMLSVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVSLSPNHFFSSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRK RKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Lag0024265 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 147/158 (93.04%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPL PN FF  ++PGDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Lag0024265 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPL PN FF  ++PGDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Lag0024265 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHKQCRNRSILMMLSVAELGKGGGLLEKPTIEK 60
           MEAAICGR+PL P HFFN +RPGDKYYFHKQCRNRSIL MLSVAELGKGGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 120/160 (75.00%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MEAAICGRVPLPPNHFFNPSRPGDKYYFHK-QCRNRSILMMLSV-AELGKGGGLLEKPTI 60
           ME AICGR+ L P+  FN S+ GDK+   K  C NRSILM LS  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 50  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 109
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 54  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDN 113
           E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

The following BLAST results are available for this feature:

BLAST of Lag0024265 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136971.1	8.3e-84	97.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	5.0e-81	93.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	1.9e-80	93.04	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	7.3e-80	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022994956.1	2.8e-79	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Lag0024265 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	1.1e-62	75.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	52.29	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.8e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.3e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	1.6e-13	42.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 77..144 e-value: 2.5E-18 score: 65.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 7.0E-21 score: 75.9
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..152
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 14.923259
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024265.1	Lag0024265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity