Lag0024098 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024098
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	UPF0426 protein At1g28150, chloroplastic
Location	chr10: 501340 .. 503087 (-)
RNA-Seq Expression	Lag0024098
Synteny	Lag0024098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTCTTCTTCTACACTCCTCTTCAACTGCCTGCGTTCTGGTACGCTCGACTCTACTCTTTAATTGCTTCGCCCTTTCCTATCCTTGCTTTCTATCCCATCTTATTGATTTTTCCTCTTTGATTCTATTGAAAGTTTGGAGGAATGGGGAAACTAAAGGAACGGAATCATAATTCAATTTTATCATCCAAGAAACGGAAACCCACCTATCTTCCTCTTGGTTGCAATCATTCTACAAATGGCATCTGCGCCTTTTTCTTCAATCCTGCAGAGGATCCCGTCATCAAAGAAGCTCTTAAGGTACCCTAATAACTCTTAAATGAAAAACCCTTCGTTGTTTCTACTTCGATTTAGGCACTTCTCTTGATTGCTGAGGATACAATTAATTTCCTATTGTTTGCTCATAGCACTTGAAAGACAAATTATCTTCGATACTTGTTTGCCTCTTCGAGTAGATAACAAATATGGTCAAAAACTGGTCCAAACTCACTCTTAATTTTCAATGTAGTTCTGGAAATAGATCTAACCCGGTTTCTTAGATTGCTGAACCAGTGATGGAATAAACAGATTTGGATTTATGAGAACCATGGTTCATTCTTTCTCCCCTGCTGCTAACTTTTCTTTGTGATGTCTTGGCTAATTGAATTAACCGTGATGATGACCACATAAAATAAGTATTATTGACAACCAAATAACTCTTATGATCTGCAAGTAACAATCTTGAACTAACTTCAAGGGAGAAAAGAATATGACTTTATGATCTGGAACGCTATTTGTTGAGGGAAATGTGAAAATATGTTTATACTTTGTAAACTCCATTTCTTTTAGGGGGTGGGGAGTAATATGCTCACTTTAATGGAAAGTTTTTGTAATTTAGTATTTTCTCAACTAGAGGTTATATTGAGTTGGTATTACTTTCACAAGTCCTTTAAACCATGGTTTTCATATTTATGAATCTCTGATTCTCTATATTGAGACAGTTGTTGTAAGAAAGACTGGGACTAAACACTTTTTACCCTACACCTTCCCTGTTCTGATTTTCCCCTTGAATTGTATCATTACACTCCTTTGTACTAGAATTCTGCCCATCAATGAACTCTAAGTAGGAACTCTCCTAATGGATACCCACAAGATTGATGAGTCATGGCTGAAAGAAGCAGTATTGTTTGGGTTTGGGAATTTATTTTTTTGCTGATTCTTGCCTCATTGCTTAGTAAGATTGAAATTTGCTAGAAGCTTATTTTGGCATCTCATCACTAAGATCCATCAATGGTGTGTTGGCTTTCACTCATGATATTGCTGAACTGATTGTTTGGCAACAGGCTCATCTGAGATTTAATGTTTGGTGATTTCCAAAATCCTTACCACTATCAAACAAGTGGAAAGTAAAAATAACTTCATTAAGCCAAATACATTTCCATAAAATTTAAACAATAGAAAAATAAGATGCTGAGGCTTTGTTGGGTGAGCAGTATGAGTTGTTTAGATGAGGACATGTTATGAAATGCTTCTGCTTTGTAGTTTATATGGAACATAGTATTATTAAAGTAATTTAATTCTGTGGGTGTAGGAGCCGGTTGCTTTCGCAGGTGGGCTATTTGCTGGACTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGCCCCAACCGAGATTGAGATTGAATGA

mRNA sequence

ATGGCGGGTCTTCTTCTACACTCCTCTTCAACTGCCTGCGTTCTGTTTGGAGGAATGGGGAAACTAAAGGAACGGAATCATAATTCAATTTTATCATCCAAGAAACGGAAACCCACCTATCTTCCTCTTGGTTGCAATCATTCTACAAATGGCATCTGCGCCTTTTTCTTCAATCCTGCAGAGGATCCCGTCATCAAAGAAGCTCTTAAGGAGCCGGTTGCTTTCGCAGGTGGGCTATTTGCTGGACTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGCCCCAACCGAGATTGAGATTGAATGA

Coding sequence (CDS)

ATGGCGGGTCTTCTTCTACACTCCTCTTCAACTGCCTGCGTTCTGTTTGGAGGAATGGGGAAACTAAAGGAACGGAATCATAATTCAATTTTATCATCCAAGAAACGGAAACCCACCTATCTTCCTCTTGGTTGCAATCATTCTACAAATGGCATCTGCGCCTTTTTCTTCAATCCTGCAGAGGATCCCGTCATCAAAGAAGCTCTTAAGGAGCCGGTTGCTTTCGCAGGTGGGCTATTTGCTGGACTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACGGTGGAATCTGCTGGAATCACAGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGCCCCAACCGAGATTGAGATTGAATGA

Protein sequence

MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKKRKPTYLPLGCNHSTNGICAFFFNPAEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQEDAPTEIEIE

Homology

[Close]

BLAST of Lag0024098 vs. NCBI nr
Match: XP_008439829.1 (PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1 UPF0426 protein [Cucumis melo var. makuwa] >TYJ98872.1 UPF0426 protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 108/128 (84.38%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKK-RKPTYLPLGCNHSTNGICAFFFNP 60
           MA LLLHSSSTA VLFG MGKLK R+H+SILSSKK  + ++L LG N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  AEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
            EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQGSVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 APTEIEIE 128
            PTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lag0024098 vs. NCBI nr
Match: XP_023000721.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 106/128 (82.81%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKK-RKPTYLPLGCNHSTNGICAFFFNP 60
           MAGLLLHSSSTACVL GGMGK +E N +SI S KK  +   L LGCN+STN ICAF F P
Sbjct: 1   MAGLLLHSSSTACVLLGGMGKFREGNRHSIFSPKKPMRANCLRLGCNNSTNAICAFLFTP 60

Query: 61  AEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
            EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 APTEIEIE 128
            PTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lag0024098 vs. NCBI nr
Match: XP_022924196.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKK-RKPTYLPLGCNHSTNGICAFFFNP 60
           MAGLLLHSSSTA VL GGMGK +E N +SI S KK  +   L LGC++STNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  AEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
            EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 APTEIEIE 128
            PTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lag0024098 vs. NCBI nr
Match: XP_004137400.1 (UPF0426 protein At1g28150, chloroplastic [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKKR-KPTYLPLGCNHSTNGICAFFFNP 60
           MA LLLHSSSTA VLFG MGKLK RNHNSILSSKK  + ++  LG N+STNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  AEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
             DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+ EEVDTQGSVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 APTEIEIE 128
            PTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lag0024098 vs. NCBI nr
Match: XP_023518976.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 5.3e-49
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MAGLLLHSSSTACVLFGGMGKLKERNHNSILSSKK-RKPTYLPLGCNHSTNGICAFFFNP 60
           MAGLLLHSSSTA VL GGMGK +E N + I S KK  +   L LGC++STNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60

Query: 61  AEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
            EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 APTEIEIE 128
            PTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lag0024098 vs. ExPASy Swiss-Prot
Match: Q9FZ89 (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 57  FNPAEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS 116
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++GIT EEVD  G 
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 117 V--QEDAPTEIEIE 128
           V   ED+P +IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

[Close]

BLAST of Lag0024098 vs. ExPASy Swiss-Prot
Match: P74786 (UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=ssl0294 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.8e-07
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 63  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITE--EVDTQGSVQEDA 122
           PV +E  ++P+AFAGG  +G+LRL L +DPLK+W++K     G+T+    D   + Q++ 
Sbjct: 8   PVTRELCQQPIAFAGGFVSGVLRLKLTDDPLKKWLQK----QGVTDFSGADINQTAQDNR 67

Query: 123 PTEIEIE 128
           P  I+I+
Sbjct: 68  PQSIDID 70

[Close]

BLAST of Lag0024098 vs. ExPASy Swiss-Prot
Match: Q8YQ06 (UPF0426 protein asl4034 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=asl4034 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-04
Identity = 16/37 (43.24%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 63  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKK 100
           P+ K+ ++ P +F GG  +G+LRL+L +DP+K W+ K
Sbjct: 8   PIFKQLVQHPASFLGGFASGVLRLNLADDPVKSWLDK 44

The following BLAST results are available for this feature:

BLAST of Lag0024098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439829.1	1.7e-50	84.38	PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1...	[more]
XP_023000721.1	4.8e-50	82.81	UPF0426 protein At1g28150, chloroplastic [Cucurbita maxima]	[more]
XP_022924196.1	1.1e-49	82.81	UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]	[more]
XP_004137400.1	1.8e-49	83.59	UPF0426 protein At1g28150, chloroplastic [Cucumis sativus]	[more]
XP_023518976.1	5.3e-49	82.03	UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0024098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ89	1.6e-19	64.86	UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P74786	6.8e-07	40.30	UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=11117...	[more]
Q8YQ06	5.4e-04	43.24	UPF0426 protein asl4034 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..127
IPR040278	UPF0426 protein	PANTHER	PTHR35996	OSJNBA0038O10.25 PROTEIN	coord: 21..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024098.1	Lag0024098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0046910	pectinesterase inhibitor activity