
Lag0023294 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAAGTTGCAAGAAGATAAAGTTTCTATCGTTGCAGGCCAAGAAACAACTTTCCAGGGGACATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTATGACTTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACGTATCGCCGAATCAAGTCAAACCCAAGTTATAAAAAATCATGATAAAGGAAAAACCACAGTGCAAGATGATCAGCCACAGTGTTCTACTTCAGTCGCTTCACTATCCATCCAACAGCTCCAAGAATGGCTGATAGAATCTGACAACGACTTTTTGGTCTTGTACAATTAA ATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAAGTTGCAAGAAGATAAAGTTTCTATCGTTGCAGGCCAAGAAACAACTTTCCAGGGGACATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTATGACTTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACGTATCGCCGAATCAAGTCAAACCCAAGTTATAAAAAATCATGATAAAGGAAAAACCACAGTGCAAGATGATCAGCCACAGTGTTCTACTTCAGTCGCTTCACTATCCATCCAACAGCTCCAAGAATGGCTGATAGAATCTGACAACGACTTTTTGGTCTTGTACAATTAA ATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAAGTTGCAAGAAGATAAAGTTTCTATCGTTGCAGGCCAAGAAACAACTTTCCAGGGGACATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTATGACTTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACGTATCGCCGAATCAAGTCAAACCCAAGTTATAAAAAATCATGATAAAGGAAAAACCACAGTGCAAGATGATCAGCCACAGTGTTCTACTTCAGTCGCTTCACTATCCATCCAACAGCTCCAAGAATGGCTGATAGAATCTGACAACGACTTTTTGGTCTTGTACAATTAA MSFKTSSMVAVMNKSYMGSTAHCCFNELKLQEDKVSIVAGQETTFQGTYTNDKFIVKYNPLFEPDYDLVTVMMTETRTMEERMAEMQEHIDTLMKAIEEKDSQIAQLKSQIENQRIAESSQTQVIKNHDKGKTTVQDDQPQCSTSVASLSIQQLQEWLIESDNDFLVLYN Homology
BLAST of Lag0023294 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 96.3 bits (238), Expect = 2.7e-16 Identity = 52/98 (53.06%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Lag0023294 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 95.5 bits (236), Expect = 4.7e-16 Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0
BLAST of Lag0023294 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]) HSP 1 Score: 95.1 bits (235), Expect = 6.1e-16 Identity = 51/98 (52.04%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Lag0023294 vs. NCBI nr
Match: KAA0048375.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK04075.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 95.1 bits (235), Expect = 6.1e-16 Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 0
BLAST of Lag0023294 vs. NCBI nr
Match: KAA0057696.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27482.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 93.6 bits (231), Expect = 1.8e-15 Identity = 50/93 (53.76%), Postives = 73/93 (78.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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