Lag0023282 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0023282
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr7: 46818157 .. 46819716 (+)
RNA-Seq ExpressionLag0023282
SyntenyLag0023282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGATTCAGGGGTTTTCCAGTTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGACCAGACCCATTAGAGATATCCCATTACCAGTCAAATCGGCGATTACTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGTGTCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAGCTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGGTTCCTTTCCCCTTTTTTTTCTTCACTATGCTCTGTTCTTTTGTGGGGTTTTAACTTTACTTCATGGGGTGCCATGGAAATAGATAATGGGCTTCTGTCATATACACATAATATTGCTGTCTTGCTCTTGCTTGTTGTGACTATAACTTTTCAATTGCTTTGTAAGTTGATGCTTTCAGTTTTTGCTCTTACTGATTTTTAGTTGCTTTGGGTGAATCAATTTGCAAATGCTGGATTTAAGCTTCTATTTTGCTCTTGGATTTCTTAGAATATGCTTGGCTTTTGCACTGCCTCCTTTTATGGAGCTACTGTGCAATTTTTACAAGTTTCAGCTATTCACTTCTTTATGCAGGATAATATCCAAATGGAAGCATGTTTAAGAAAGGTCGTAAATAAAATAAATTCATGTATTGATGTTCCTTTCGATCATATATTGGGTTGTTTTCCCACTTCCTACTAAGTTTTTAGCTTAATTTATGTCGAATGCCACCCAGTGCATTCGAGTTTTCTTCTTCCTTAGGAATACTGTCCTGTTGCTCTCCTGTCCATCTCTGATCTTCCCCTTTCAGTGCTTATCAGGTCTACTTCAAACTTTTTGTTTGAATTATAATTATGATCTCAAATATGAAACATAGTTCGATCTAATTGCGTGTGGAAATGTTTTCTGTTAGATTCTTTTATCTTCAACTCGGAATGAATCAATTTTACTTCATCGTTTTTTGTAATTTGACCTGTTGTAGTTTTCTGTCGTCATTATGTTTGCTCTACCTTACACACTTGTTGAATTTTCAGATATTTAGGTTAATTCAAAAGCAAGATTGGTACAAGCCTGATGTTTTTATGTATAAGGACTTGATTGTTGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGGATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGCGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCGTTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

mRNA sequence

ATGCCGATTCAGGGGTTTTCCAGTTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGACCAGACCCATTAGAGATATCCCATTACCAGTCAAATCGGCGATTACTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGTGTCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAGCTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGATATTTAGGTTAATTCAAAAGCAAGATTGGTACAAGCCTGATGTTTTTATGTATAAGGACTTGATTGTTGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGGATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGCGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCGTTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

Coding sequence (CDS)

ATGCCGATTCAGGGGTTTTCCAGTTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGACCAGACCCATTAGAGATATCCCATTACCAGTCAAATCGGCGATTACTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGTGTCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAGCTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGATATTTAGGTTAATTCAAAAGCAAGATTGGTACAAGCCTGATGTTTTTATGTATAAGGACTTGATTGTTGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGGATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGCGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCGTTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

Protein sequence

MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEEVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR
Homology
[Close]
BLAST of Lag0023282 vs. NCBI nr
Match: XP_022158131.1 (pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia])

HSP 1 Score: 478.4 bits (1230), Expect = 3.8e-131
Identity = 235/255 (92.16%), Postives = 244/255 (95.69%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M I+GFS SKLPI ASV LR LT RPIRDIPLPVKS ITGFQPDSSRP+CGFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMK HVSRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVFMYKDLI+ALA SKKMDDAM LWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.1 bits (1211), Expect = 6.1e-129
Identity = 229/255 (89.80%), Postives = 242/255 (94.90%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS SKLPI  SV LR LTTRPIRDI LPVKS + GFQPDSS+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAM LWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 232/255 (90.98%), Postives = 241/255 (94.51%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FS SKLPI ASV LR LT RPIRD  LPVKS ITGFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HV RLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVF+YKDLI+ALA+SKKMDDAM LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469.5 bits (1207), Expect = 1.8e-128
Identity = 228/255 (89.41%), Postives = 242/255 (94.90%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS SKLPI  SV LR LTTRPIRDI LPVKS + GFQPDSS+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MD+AM LWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-128
Identity = 228/255 (89.41%), Postives = 240/255 (94.12%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS  KLPI  SV LR L  RPIRDIPLPVKS + GFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAM LWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.9e-96
Identity = 173/248 (69.76%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 8   SSKLPILASVLLRALTTRP-IRDIPLPVKSAITGFQPDSSRPLCGF-RLYHDGRPRGPLW 67
           S K P  AS+  + +T  P I  I        T   P   +P   F   +HDGRPRGPLW
Sbjct: 8   SRKFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLW 67

Query: 68  RSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEEVALSV 127
           R +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE AL++
Sbjct: 68  RGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAI 127

Query: 128 KIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRG 187
           K+F +IQKQ+WY+PDVFMYKDLIV+LAKSK+MD+AM LWE M+KENLFPDSQTYTEVIRG
Sbjct: 128 KMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRG 187

Query: 188 FLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVY 247
           FLR G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H Y
Sbjct: 188 FLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAY 247

Query: 248 DPPEEIFG 254
           DPPEEIFG
Sbjct: 248 DPPEEIFG 255

[Close]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.2e-46
Identity = 82/181 (45.30%), Postives = 130/181 (71.82%), Query Frame = 0 

Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEEVALSVKIFRL 130
           + KE L   + LKR +    +L +F+  HVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRGFLRFG 190
           ++++ WY+PD+F Y+D+++ LA++KK+D+   +WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 120 EVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L K K+M+DA  L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 34/100 (34.00%), Postives = 56/100 (56.00%), Query Frame = 0 

Query: 124 SVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVI 183
           ++++F L+++Q WYKP+V +Y  LIV L K K+ + A  L++ M  E    + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192

Query: 184 RGFLRFGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
             + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match: Q9SAD9 (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 139 PDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRGFLRFGSPSDAMNI 198
           PD   Y  ++  L KS  +D A G++  M +  + PD+ +Y  +I G  R G  ++A+ +
Sbjct: 393 PDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKL 452

Query: 199 YEDMKKSPDPPDELPFRILLKGLL 223
           +EDMK     PDEL F+ ++ GL+
Sbjct: 453 FEDMKGKECCPDELTFKFIIGGLI 476

[Close]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.9e-131
Identity = 235/255 (92.16%), Postives = 244/255 (95.69%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M I+GFS SKLPI ASV LR LT RPIRDIPLPVKS ITGFQPDSSRP+CGFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMK HVSRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVFMYKDLI+ALA SKKMDDAM LWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 228/255 (89.41%), Postives = 240/255 (94.12%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS  KLPI  SV LR L  RPIRDIPLPVKS + GFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAM LWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match: A0A6J1I496 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469502 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.3e-128
Identity = 230/255 (90.20%), Postives = 240/255 (94.12%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS SKLPI  SV LR LT RPIRDIPLPVKS I GF PDSSR L GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+W+KPDVF+YKDLIVALA+SKKMDDAM LWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.1e-126
Identity = 225/255 (88.24%), Postives = 240/255 (94.12%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FS SKLPI A V LR LT RPIRD+PLPV S ITGFQPDSSRP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMK HVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VKIFRLI+KQDWYKPDV++YKDLI+ALA+SKKMDDAM LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMN+YEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.1e-126
Identity = 223/255 (87.45%), Postives = 240/255 (94.12%), Query Frame = 0 

Query: 1   MPIQGFSSSKLPILASVLLRALTTRPIRDIPLPVKSAITGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FS SKLP+ ASV L+ LT RPIRD+PLPVKS IT FQPDS RP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMK HVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYT 180
           VAL+VKIFRLI+KQDWYKPDV++YKDLI+ALA+SKKMDDAM LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]
BLAST of Lag0023282 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 353.6 bits (906), Expect = 1.3e-97
Identity = 173/248 (69.76%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 8   SSKLPILASVLLRALTTRP-IRDIPLPVKSAITGFQPDSSRPLCGF-RLYHDGRPRGPLW 67
           S K P  AS+  + +T  P I  I        T   P   +P   F   +HDGRPRGPLW
Sbjct: 8   SRKFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLW 67

Query: 68  RSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEEVALSV 127
           R +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE AL++
Sbjct: 68  RGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAI 127

Query: 128 KIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRG 187
           K+F +IQKQ+WY+PDVFMYKDLIV+LAKSK+MD+AM LWE M+KENLFPDSQTYTEVIRG
Sbjct: 128 KMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRG 187

Query: 188 FLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVY 247
           FLR G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H Y
Sbjct: 188 FLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAY 247

Query: 248 DPPEEIFG 254
           DPPEEIFG
Sbjct: 248 DPPEEIFG 255

[Close]
BLAST of Lag0023282 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-47
Identity = 82/181 (45.30%), Postives = 130/181 (71.82%), Query Frame = 0 

Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVSRLLKLDMIAVLGELERQEEVALSVKIFRL 130
           + KE L   + LKR +    +L +F+  HVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTYTEVIRGFLRFG 190
           ++++ WY+PD+F Y+D+++ LA++KK+D+   +WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]
BLAST of Lag0023282 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15
Identity = 57/177 (32.20%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLQKFMKCHVSRLLK 120
           R PL R R  +  EA+  +Q LKR                      L + +     RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMIAVLGELERQEEVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWE 180
            DM+AVL EL RQ E +L++K+F  I+K+ WYKP V MY D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMRKE-NLFPDSQTYTEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
           +M+ E  L  + + +  ++   L        M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]
BLAST of Lag0023282 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 32/103 (31.07%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 117 RQEEVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDS 176
           R++EV  + K+F+ + +   ++ +V  Y  LI  L ++KK+D+A+ L   M+ +N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEV-SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 177 QTYTEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLK 220
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L++
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303

[Close]
BLAST of Lag0023282 vs. TAIR 10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 120 EVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMGLWESMRKENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L K K+M+DA  L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

The following BLAST results are available for this feature:
BLAST of Lag0023282 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158131.13.8e-13192.16pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia][more]
XP_023519300.16.1e-12989.80protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs... [more]
XP_038895593.11.0e-12890.98protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955... [more]
XP_023521051.11.8e-12889.41protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X... [more]
XP_022964699.13.0e-12889.41protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964... [more]
BLAST of Lag0023282 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF91.9e-9669.76Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH75.2e-4645.30Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9FMQ15.0e-0935.29Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop... [more]
Q9FKC31.1e-0834.00Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q9SAD91.5e-0834.52Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidop... [more]
BLAST of Lag0023282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E0451.9e-13192.16pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=... [more]
A0A6J1HLK11.5e-12889.41protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1I4963.3e-12890.20protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=... [more]
A0A5A7SRJ71.1e-12688.24Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LVE91.1e-12687.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1[more]
BLAST of Lag0023282 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46870.11.3e-9769.76Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62350.13.7e-4745.30Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G09320.11.3e-1532.20Vacuolar sorting protein 9 (VPS9) domain [more]
AT1G77340.13.6e-1031.07Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G12100.13.6e-1035.29pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 69..255
e-value: 1.4E-54
score: 186.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 139..187
e-value: 6.4E-10
score: 39.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 143..175
e-value: 2.0E-5
score: 22.5
coord: 178..205
e-value: 7.6E-4
score: 17.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 10.764054
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..209
score: 10.55579
IPR044795Pentatricopeptide repeat-containing protein THA8L-likePANTHERPTHR46870PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 6..254
NoneNo IPR availablePANTHERPTHR46870:SF2PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 6..254

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0023282.1Lag0023282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding