Lag0023255 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023255
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Rab5-interacting
Location	chr7: 46516570 .. 46518312 (-)
RNA-Seq Expression	Lag0023255
Synteny	Lag0023255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGACGGGAAGTCGATTAAGGTCAACAATTCTCAGTTGCAGCACCAGAACGGTCACTTGCCGCCCTTCAAATTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGTTTTCTTAAACTTTGCTTTCTTCTGAATTCTACACTTTCAGCCCAATGGAAATTCTTATAATTCTGTGTTTTCCGGGATGTTTCATTTCTCTTTTTTTTCGCTGTGCACGAGAAGGAACTGAAGTCTTTAAGTTCAAGTTGTTGCTTGTTCTGCTGTAGTATTTTTAGTTTCTAACTATGAAATATTTGCATTACTCATGAATTTTAACGAAGTGAGATAGTTTATCCATAATCGTAGTGTGTATTAGTATAAAGATATCTAGGATTAGGTCAATCTGAACATAGCTTAGCGGACAAAACTCAAATTACCATCCTAAGGTTGATGGTTCAGTTTTAGCTATTTTTATGATTGAATACCATTGATAAAGGAAGAGGAAAAGAAGCCATGAATGAGAACATTTTATACCTGGTATCTGAAATCAATTGGATGGGTAATTTCTTACTAAAGCTGTGCTTTGGCCTTTGGCTTGAACCTCTTTTACAACTCATTTTGTTCTGTTCTCAACTCAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCTTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCATTTGGTTCATCTTGTAAGTTGCCATTTTTATACCTTTCTCTTCGGCATATATGTGTTTAGGATCGCTTTTGGGCGCAGTGTTTCTGAATGAAACTTTCCCATGTTAACACTTTTGGAAAGCGTACTAATTAAGTCATTCCAAGCATTTCAAATTGTTTTACAGGTGGTCTTTTAAGAACTGAATATCATGAAAATTTTGAAGATGGTTTAGTTAATCAAAGATACTTTTAGCGCTGTAAAAGAACTGCCCAAACACACTATTAGTGCTTTGGAATTTAATTAGTCTACGAGGGTCTGTTTGTTTTTTCCTTTTACCTTCGTTAGTAATTTACACATCCTTTCCACATCTTCATCTTTTTCAATAAGTCGGTTAGTTCCTTAAAATGAACCTGAGTATTACTCAACTGATTGAGACATATACGTACCATCAATCAAGAGGTTAGAGATTTGAATCTCCCCACCCCCACATTTTGAACTAAAAAAATGAACCTCTCGTCCAATATGTTAGCATCCATGATTGCATGTCTCCATGCCTGCAACCTTCATCTCAACAGCAAAATAGAAAAATTGACTGTCTTGTAGTATCAACTATCATTATCTGAAATATCATATTTACACAATTCATTATGCATTTTTTGAGTTCTCTCTACTAAACATTTCATTTCTTGCACTTGGAAACTTTAGTTAATTTGATGATTTTGGTCTCATTTTTAGATTCTTGGTGATATCAACTACGATGGTATACGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAAATCTTATGGCATCTTTTAACTCTCCCTCTCTGTCTTCTGATCACAATCTGCATCATCTTCTGCTTGTGCAAGCTGCTGAGTCTTTTGTTAGTTCAAGTGCTTATTTTCCTTTTCTTCTGTGTTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATGATCGTTTAG

mRNA sequence

ATGAAGGACGGGAAGTCGATTAAGGTCAACAATTCTCAGTTGCAGCACCAGAACGGTCACTTGCCGCCCTTCAAATTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCTTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCATTTGGTTCATCTTATTCTTGGTGATATCAACTACGATGGTATACGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAAATCTTATGGCATCTTTTAACTCTCCCTCTCTGTCTTCTGATCACAATCTGCATCATCTTCTGCTTGTGCAAGCTGCTGAGTCTTTTGTTAGTTCAAGTGCTTATTTTCCTTTTCTTCTGTGTTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATGATCGTTTAG

Coding sequence (CDS)

ATGAAGGACGGGAAGTCGATTAAGGTCAACAATTCTCAGTTGCAGCACCAGAACGGTCACTTGCCGCCCTTCAAATTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCTTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCATTTGGTTCATCTTATTCTTGGTGATATCAACTACGATGGTATACGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAAATCTTATGGCATCTTTTAACTCTCCCTCTCTGTCTTCTGATCACAATCTGCATCATCTTCTGCTTGTGCAAGCTGCTGAGTCTTTTGTTAGTTCAAGTGCTTATTTTCCTTTTCTTCTGTGTTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATGATCGTTTAG

Protein sequence

MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWGSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLVNLMASFNSPSLSSDHNLHHLLLVQAAESFVSSSAYFPFLLCCSAYVDSRLQLGTFLMIV

Homology

[Close]

BLAST of Lag0023255 vs. NCBI nr
Match: XP_022948613.1 (uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >KAG6607251.1 Respirasome Complex Assembly Factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036935.1 hypothetical protein SDJN02_00555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLW 60
           MKDGKSIKV NSQLQHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLW
Sbjct: 1   MKDGKSIKV-NSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLW 60

Query: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLV 118
           GS+PLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFL+
Sbjct: 61  GSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 116

[Close]

BLAST of Lag0023255 vs. NCBI nr
Match: XP_038895585.1 (respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-56
Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLW 60
           MKDGKS KV NSQLQHQNGHLPPFKLAKLFDPE SWDKDQLGDVLHWMRQSVA VCGLLW
Sbjct: 1   MKDGKSTKV-NSQLQHQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLW 60

Query: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLV 118
           GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFL+
Sbjct: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 116

[Close]

BLAST of Lag0023255 vs. NCBI nr
Match: XP_022998338.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-56
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLW 60
           MKDGKSIKV NSQLQHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLW
Sbjct: 1   MKDGKSIKV-NSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLW 60

Query: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLV 118
           GS+PLVGGIWFI+FLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFL+
Sbjct: 61  GSVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 116

[Close]

BLAST of Lag0023255 vs. NCBI nr
Match: KAA0067751.1 (Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 8.1e-56
Identity = 116/153 (75.82%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLW 60
           MKDGK++KV NSQLQHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLW
Sbjct: 1   MKDGKTMKV-NSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLW 60

Query: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLVNLM 120
           GSIPLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFL+  +
Sbjct: 61  GSIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLGTL 120

Query: 121 AS--FNSPSLSSDHNLHHLLLVQAAESFVSSSA 152
            +   ++ S S+  ++  L+ + A  SF+S  A
Sbjct: 121 LTMVLSTFSKSAKASVERLVAIVAC-SFISECA 151

[Close]

BLAST of Lag0023255 vs. NCBI nr
Match: XP_008457469.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-55
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MKDGKSIKVNNSQLQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLW 60
           MKDGK++KV NSQLQHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLW
Sbjct: 1   MKDGKTMKV-NSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLW 60

Query: 61  GSIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLV 118
           GSIPLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFL+
Sbjct: 61  GSIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLL 116

[Close]

BLAST of Lag0023255 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 13  QLQHQNGHLPPFKLAKLFDPEASW-DKDQLGDVLHWMRQSVAFVCGLLWGSIPLVGGIWF 72
           Q Q  NG L     +K+   +A+W DKD+  DV++W RQ +A V G++WG +PL G +  
Sbjct: 12  QPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGI 71

Query: 73  ILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLVNLMASFNSPSLSSD 132
             F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF+V +  SF +  L  D
Sbjct: 72  AGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGHL--D 131

Query: 133 HNLH 136
           H LH
Sbjct: 132 HLLH 133

[Close]

BLAST of Lag0023255 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 13  QLQHQNGHLPPFKLAKLFDPEASW-DKDQLGDVLHWMRQSVAFVCGLLWGSIPLVGGIWF 72
           Q Q  NG L     +K+   +A+W DKD+  DV++W RQ +A V G++WG +PL G +  
Sbjct: 12  QPQLANGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGI 71

Query: 73  ILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLV 118
             F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF+V
Sbjct: 72  AGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117

The following BLAST results are available for this feature:

BLAST of Lag0023255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948613.1	2.1e-56	95.73	uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 un...	[more]
XP_038895585.1	4.8e-56	95.73	respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]	[more]
XP_022998338.1	4.8e-56	94.87	uncharacterized protein C20orf24 homolog [Cucurbita maxima]	[more]
KAA0067751.1	8.1e-56	75.82	Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumi...	[more]
XP_008457469.1	2.4e-55	92.31	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]	[more]

BLAST of Lag0023255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUV8	3.8e-16	39.52	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]
Q9CQT9	1.6e-14	39.62	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 44..117 e-value: 1.1E-9 score: 38.7
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 1..122
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023255.1	Lag0023255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane