Lag0023096 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023096
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr7: 44104243 .. 44105113 (-)
RNA-Seq Expression	Lag0023096
Synteny	Lag0023096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAACATAGAACTTCTTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATCATAAACTTCCTAGTTGTAGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCCACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATAAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTTGTCAAAGGAGAGCAGAAGGCATCACGAGAGTGTTACTGGACCGCGCTGAAAGCAGTTAAGCCACAGAGGGCCGATGTCGACTAGAGGATGGGTCGAGGCCGAGCAGAGCACACTTCCACCAACTCTGAATTTGAACTTATGGAGTTTTAGGGCTTCTTGTTTATTGCATTCTGTCATGTAATTAAACATTGATTGTTTTGTTTCCGCTTCTAGTTTGTAGGAATAGGTTGAGTATTTTTCCCTACTTACTTTCATTCAAATGTAAAAGTTTAATTAATGTCAAAACCCCATAGTTTCACCATTAAAGTTCAGTATTCAGAAGTGTGCACAAGGCAACCGACTCAAGCATCACACTACGCGAGCCTGGACTACCGAGTCTACCCCGCCTCATCCAGACTTGAGATTACGTGAGCCTGGACTACCGAGTCTACCTCACCTCATCTGGCTTGAGCATTTTCACATCATGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCATACTTGAGGCTATGTGATCCTGGACCATGGGTCTACCTCACAAGCCATCACATCATGCGAGCTTGGACTACCGATCTACCTCGCCTCATCCAAACTTGA

mRNA sequence

ATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAACATAGAACTTCTTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATCATAAACTTCCTAGTTGTAGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCCACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATAAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTTGTCAAAGGAGAGCAGAAGGCATCACGAGAGTGTTACTGGACCGCGCTGAAAGCAAAGTGTGCACAAGGCAACCGACTCAAGCATCACACTACGCGAGCCTGGACTACCGAGTCTACCCCGCCTCATCCAGACTTGAGATTACGTGAGCCTGGACTACCGAGTCTACCTCACCTCATCTGGCTTGAGCATTTTCACATCATGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCATACTTGAGGCTATGTGATCCTGGACCATGGGTCTACCTCACAAGCCATCACATCATGCGAGCTTGGACTACCGATCTACCTCGCCTCATCCAAACTTGA

Coding sequence (CDS)

ATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAACATAGAACTTCTTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATCATAAACTTCCTAGTTGTAGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCCACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATAAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTTGTCAAAGGAGAGCAGAAGGCATCACGAGAGTGTTACTGGACCGCGCTGAAAGCAAAGTGTGCACAAGGCAACCGACTCAAGCATCACACTACGCGAGCCTGGACTACCGAGTCTACCCCGCCTCATCCAGACTTGAGATTACGTGAGCCTGGACTACCGAGTCTACCTCACCTCATCTGGCTTGAGCATTTTCACATCATGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCATACTTGAGGCTATGTGATCCTGGACCATGGGTCTACCTCACAAGCCATCACATCATGCGAGCTTGGACTACCGATCTACCTCGCCTCATCCAAACTTGA

Protein sequence

MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAILGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALKAKCAQGNRLKHHTTRAWTTESTPPHPDLRLREPGLPSLPHLIWLEHFHIMRAWTTESTSPHPYLRLCDPGPWVYLTSHHIMRAWTTDLPRLIQT

Homology

[Close]

BLAST of Lag0023096 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-30
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PLVGFGGERV PEG IE  VTFG G  +VTK+++ LVV+  S+YNAI
Sbjct: 139 MDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSSYNAI 198

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGRPT+H ++AI STYH+ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 199 LGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0023096 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-30
Identity = 62/107 (57.94%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  E+LK SLTPL+GFGGER+ P+G IEL +TF     ++T++++FLVVD  S+YN I
Sbjct: 92  MDLGEEVLKSSLTPLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           L RPT+H ++AI STYH+ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0023096 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PL+GFG ERV PEG IEL VTFG G  +VTK+++FLVVD  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLIGFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGR T+H +KAI STYH+ +KFPT  GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LGRSTMHMLKAIPSTYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0023096 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-29
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PLVGFGGERV  EG IEL VTFG G  +VTK+++FLVV+  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGRPT+H +KAI STYH+  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 152 LGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0023096 vs. NCBI nr
Match: XP_022154102.1 (uncharacterized protein LOC111021438 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-29
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L +E LK SLTPL+GFGGERV P G IEL VTF  G  ++TK+++FLVVD  S+YNAI
Sbjct: 92  MDLGKEXLKSSLTPLIGFGGERVIPXGXIELPVTFESGPKSITKMVDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTAL 107
           L R T++ +KAI STYH+ +KFPTP GVG +KGEQ+  RECY+T +
Sbjct: 152 LERXTMYMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVXRECYYTXM 197

[Close]

BLAST of Lag0023096 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.6e-31
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PLVGFGGERV PEG IE  VTFG G  +VTK+++ LVV+  S+YNAI
Sbjct: 139 MDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSSYNAI 198

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGRPT+H ++AI STYH+ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 199 LGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0023096 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-30
Identity = 62/107 (57.94%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  E+LK SLTPL+GFGGER+ P+G IEL +TF     ++T++++FLVVD  S+YN I
Sbjct: 92  MDLGEEVLKSSLTPLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           L RPT+H ++AI STYH+ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0023096 vs. ExPASy TrEMBL
Match: A0A6J1DXV4 (uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025147 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PL+GFG ERV PEG IEL VTFG G  +VTK+++FLVVD  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLIGFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGR T+H +KAI STYH+ +KFPT  GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LGRSTMHMLKAIPSTYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0023096 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.5e-30
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L  ++LK S  PLVGFGGERV  EG IEL VTFG G  +VTK+++FLVV+  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTALK 108
           LGRPT+H +KAI STYH+  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 152 LGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0023096 vs. ExPASy TrEMBL
Match: A0A6J1DKR9 (uncharacterized protein LOC111021438 OS=Momordica charantia OX=3673 GN=LOC111021438 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MQLERELLKPSLTPLVGFGGERVTPEGNIELLVTFGDGQNAVTKIINFLVVDCMSAYNAI 60
           M L +E LK SLTPL+GFGGERV P G IEL VTF  G  ++TK+++FLVVD  S+YNAI
Sbjct: 92  MDLGKEXLKSSLTPLIGFGGERVIPXGXIELPVTFESGPKSITKMVDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHKLLKFPTPNGVGVVKGEQKASRECYWTAL 107
           L R T++ +KAI STYH+ +KFPTP GVG +KGEQ+  RECY+T +
Sbjct: 152 LERXTMYMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVXRECYYTXM 197

The following BLAST results are available for this feature:

BLAST of Lag0023096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	1.8e-30	61.68	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022146774.1	8.8e-30	57.94	uncharacterized protein LOC111015901 [Momordica charantia]	[more]
XP_022158687.1	1.1e-29	61.68	uncharacterized protein LOC111025147 [Momordica charantia]	[more]
XP_022155186.1	2.0e-29	62.62	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022154102.1	4.4e-29	61.32	uncharacterized protein LOC111021438 [Momordica charantia]	[more]

BLAST of Lag0023096 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0023096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS4	8.6e-31	61.68	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1CZ14	4.2e-30	57.94	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1DXV4	5.5e-30	61.68	uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DQY2	9.5e-30	62.62	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DKR9	2.1e-29	61.32	uncharacterized protein LOC111021438 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of Lag0023096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 5..67 e-value: 1.91796E-8 score: 48.1016

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023096.1	Lag0023096.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity