Lag0022916 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022916
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr7: 40793129 .. 40796365 (-)
RNA-Seq Expression	Lag0022916
Synteny	Lag0022916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAAGAAGGAAGGAACAACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCGAAAGGAAAGCGACAAACAAATGGAGCGCATCATTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGAGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAATGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTTCAAAATTTCCACGAAAAGGAAAAAGAGAACCTTGCGACTTCTTACTGCATCGACATAGAAGAAGTTGACAATTCTGAGAAGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAAAAACAATTCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAAAAAATTCTTCGATGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTCGAGGGTTCTTAGTTGTACAACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTTCCTCTTCTCTCAAATTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCAGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGGGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCATGTTGAAGGTTCTCACGCGCTTCGTTGCGGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCATGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCCTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGTTGCATTTCCTTCCTCCAAGTCTGAAGGTTCACGCACTTTGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACACATTTCGCTGCAGTTCCTTCCCCCGAGTTCGAAGGTTCTAACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCATCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCAAAAGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTGGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGTTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTAAATTGTCCCTGCACTCATGCTGAAAGGGCGTGACGGCGACACAAGTCCAAGGACATGTCCCAAAGCAAGGAACATGTCTCTGTACTCATGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCAAGGAACATGTCCCTGTACTCATGCTGAAAGACGTGGCGGCAGCACAAGTCCAAGGACATGTCCCAAAGCAGGGAATATGCCCCTACACTCGTGCTGA

mRNA sequence

ATGAGAAAAGAAGGAAGGAACAACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCGAAAGGAAAGCGACAAACAAATGGAGCGCATCATTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGAGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAATGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTCGAGGGTTCTTAGTTGTACAACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTTCCTCTTCTCTCAAATTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCAGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGGGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCATGTTGAAGGTTCTCACGCGCTTCGTTGCGGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCTCCAAATTCGAAGGTTCTCACATCGCTTCCCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCCTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGTTGCATTTCCTTCCTCCAAGTCTGAAGGTTCACGCACTTTGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACACATTTCGCTGCAGTTCCTTCCCCCGAGTTCGAAGGTTCTAACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCATCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCAAAAGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTGGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGTTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGCGTGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCAAGGAACATGTCCCTGTACTCATGCTGAAAGACGTGGCGGCAGCACAAGTCCAAGGACATGTCCCAAAGCAGGGAATATGCCCCTACACTCGTGCTGA

Coding sequence (CDS)

ATGAGAAAAGAAGGAAGGAACAACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCGAAAGGAAAGCGACAAACAAATGGAGCGCATCATTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGAGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAATGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTCGAGGGTTCTTAGTTGTACAACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTTCCTCTTCTCTCAAATTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCAGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGGGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCATGTTGAAGGTTCTCACGCGCTTCGTTGCGGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCTCCAAATTCGAAGGTTCTCACATCGCTTCCCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCCTCCCCAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGTTGCATTTCCTTCCTCCAAGTCTGAAGGTTCACGCACTTTGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACACATTTCGCTGCAGTTCCTTCCCCCGAGTTCGAAGGTTCTAACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCATCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCAAAAGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTGGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGTTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTACACTGCTGCGCTACTTCCTAAAGTCCAAAGACGCGTGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCAAGGAACATGTCCCTGTACTCATGCTGAAAGACGTGGCGGCAGCACAAGTCCAAGGACATGTCCCAAAGCAGGGAATATGCCCCTACACTCGTGCTGA

Protein sequence

MRKEGRNNEETIEESMVVNTTLPKSSSKGKRQTNGAHHLTLKERQKKIYPFPDADIPDMLEQLLEEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKGKSKHQRKNDPKKLQPKRKRSKKFSQPQQLDLRLRSHQASNYSSFSIPKNEYGHDRRRKSMFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKLSVLINTRFLEVRRFFVVSCCIVPSPSSRVLSCTTTTLFLLQVRRILCGALLHCFLFSQIRWFSRSFAGVSSPQVRRFSRAPLQFLLSKVEGSHSFSPSSKVHTLRCSSFSQIRRFSRASLQFLPPSSKVLRCCSSFFQVRRFSRRFAAVPSSKFEGSHVLRSSSFSPRSKVLTGCVAVLSPQVRRFTHFAAVPSPKFEGSHALRSAIPSPSSKVLTRFAAVPSSMLKVLTRFVAVPSSQFEGSHALRCSSFPPSLKVLTSLRCDPSSKFEGSHALRSAIPSPKFEGSHALRAVPSSKFEGSHALRCISFLQIRRFSHRFPAILPPSSKVLTRFALQFPPQSSKVLTRFVQFLPPNSKVLTRFVAFPSSKSEGSRTLLQFLLPNSKVLTHFAAVPSPEFEGSNALRCSSFLQVQRFSRASLQFHPPSSKVLTRFAAVPSPKLKVLTRFVAVPSSKFKSSHALRCSSFPPSSKVLTHFAAVSFSKFEGPHATLGYTAALLPKVQRRQLSSRCAASFSKFEGPHATLGYTAALLPKVQRRVAATQVQGHVPKQGTCPCTHAERRGGSTSPRTCPKAGNMPLHSC

Homology

[Close]

BLAST of Lag0022916 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.2e-43
Identity = 143/323 (44.27%), Postives = 182/323 (56.35%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 394 IKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLL 453

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DE
Sbjct: 454 ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 513

Query: 132 VAQSNLATIKGKSKHQRKNDPKKLQPKRK--------RSKKFSQPQQLDLRLRSHQAS-- 191
           VAQ+N A I+  S   +  D   LQ +R         RS     P+++      H AS  
Sbjct: 514 VAQTNHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIV 573

Query: 192 ----NYSSFSIPKNEYGHDRRRKSMFGVHLHSTFSFPKAKCLHIEEKSTFDIC------- 251
               NY S S   N      +R S+F     ST      + L +  K   + C       
Sbjct: 574 EVDNNYGS-SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTR 633

Query: 252 ---------------------FDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSR 285
                                FDRLK+T+DQ +R+M + + K F E N+D K+ S +PSR
Sbjct: 634 TSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 693

[Close]

BLAST of Lag0022916 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 7.9e-40
Identity = 137/357 (38.38%), Postives = 185/357 (51.82%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGKRQTNGAHH-------LTLKERQKKIYPFPDADIPDMLEQLL 71
           + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPFPD+D+ DMLEQL+
Sbjct: 368 LNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLI 427

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E+QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA+E KIELD+DE
Sbjct: 428 EKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDE 487

Query: 132 VAQSNLATIKGKSK--------HQRK----------------------NDPKKLQPKRKR 191
           VAQ+N   +   S          QRK                      N   K +P    
Sbjct: 488 VAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDE 547

Query: 192 SKKF----------SQPQQLDLRLRSHQAS------NYSSFSIPKNEYGHDRRRKSMFGV 251
            +++            P+++      H  S      NY S+    N     ++R S+F  
Sbjct: 548 GEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNS-NEIKQRTSVFDC 607

Query: 252 ----------------------HLHSTFSFP-----KAKCLHIEEK---STFDICFDRLK 285
                                 +   TF++      K   + I +K   ST+   FDRLK
Sbjct: 608 IKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTY--TFDRLK 667

[Close]

BLAST of Lag0022916 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-37
Identity = 87/132 (65.91%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 9   EETIEESMVVNTTLPKSSSKGK-----RQTNGA--HHLTLKERQKKIYPFPDADIPDMLE 68
           + T++ESMVVNTT P   SKGK     ++ +G+    LTLKERQ+K+YPFPD+DI DMLE
Sbjct: 391 KSTLKESMVVNTT-PLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFPDSDIADMLE 450

Query: 69  QLLEEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELD 128
           QLLE+QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LIL+LA+E +IELD
Sbjct: 451 QLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELD 510

Query: 129 LDEVAQSNLATI 134
           L+EVAQ+N A +
Sbjct: 511 LEEVAQTNHAEV 521

[Close]

BLAST of Lag0022916 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-36
Identity = 87/132 (65.91%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 9   EETIEESMVVNTTLPKSSSKGK-----RQTNGA--HHLTLKERQKKIYPFPDADIPDMLE 68
           + T +ESMVVNTT P   SKGK     ++ +G+    LTLKERQ+K+YPFPD+DI DMLE
Sbjct: 190 KSTAKESMVVNTT-PLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFPDSDIADMLE 249

Query: 69  QLLEEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELD 128
           QLLE+QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LIL+LA+E +IELD
Sbjct: 250 QLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELD 309

Query: 129 LDEVAQSNLATI 134
           L+EVAQ+N A +
Sbjct: 310 LEEVAQTNHAEV 320

[Close]

BLAST of Lag0022916 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-36
Identity = 87/132 (65.91%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 9   EETIEESMVVNTTLPKSSSKGK-----RQTNGA--HHLTLKERQKKIYPFPDADIPDMLE 68
           + T +ESMVVNTT P   SKGK     ++ +G+    LTLKERQ+K+YPFPD+DI DMLE
Sbjct: 391 KSTAKESMVVNTT-PLKFSKGKEARVEKKDDGSERRRLTLKERQEKVYPFPDSDIADMLE 450

Query: 69  QLLEEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELD 128
           QLLE+QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LIL+LA+E +IELD
Sbjct: 451 QLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELD 510

Query: 129 LDEVAQSNLATI 134
           L+EVAQ+N A +
Sbjct: 511 LEEVAQTNHAEV 521

[Close]

BLAST of Lag0022916 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.7e-44
Identity = 143/323 (44.27%), Postives = 182/323 (56.35%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 394 IKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLL 453

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DE
Sbjct: 454 ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 513

Query: 132 VAQSNLATIKGKSKHQRKNDPKKLQPKRK--------RSKKFSQPQQLDLRLRSHQAS-- 191
           VAQ+N A I+  S   +  D   LQ +R         RS     P+++      H AS  
Sbjct: 514 VAQTNHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIV 573

Query: 192 ----NYSSFSIPKNEYGHDRRRKSMFGVHLHSTFSFPKAKCLHIEEKSTFDIC------- 251
               NY S S   N      +R S+F     ST      + L +  K   + C       
Sbjct: 574 EVDNNYGS-SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTR 633

Query: 252 ---------------------FDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSR 285
                                FDRLK+T+DQ +R+M + + K F E N+D K+ S +PSR
Sbjct: 634 TSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 693

[Close]

BLAST of Lag0022916 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.8e-40
Identity = 137/357 (38.38%), Postives = 185/357 (51.82%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGKRQTNGAHH-------LTLKERQKKIYPFPDADIPDMLEQLL 71
           + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPFPD+D+ DMLEQL+
Sbjct: 368 LNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLI 427

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E+QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA+E KIELD+DE
Sbjct: 428 EKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDE 487

Query: 132 VAQSNLATIKGKSK--------HQRK----------------------NDPKKLQPKRKR 191
           VAQ+N   +   S          QRK                      N   K +P    
Sbjct: 488 VAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDE 547

Query: 192 SKKF----------SQPQQLDLRLRSHQAS------NYSSFSIPKNEYGHDRRRKSMFGV 251
            +++            P+++      H  S      NY S+    N     ++R S+F  
Sbjct: 548 GEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNS-NEIKQRTSVFDC 607

Query: 252 ----------------------HLHSTFSFP-----KAKCLHIEEK---STFDICFDRLK 285
                                 +   TF++      K   + I +K   ST+   FDRLK
Sbjct: 608 IKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTY--TFDRLK 667

[Close]

BLAST of Lag0022916 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.2e-37
Identity = 146/406 (35.96%), Postives = 185/406 (45.57%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQKK+YPFPD+D+ DMLEQLL
Sbjct: 36  IKESMVVHETPLKSFSKRKETKIERKHDGDEKRQSTLKERQKKVYPFPDSDVADMLEQLL 95

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DE
Sbjct: 96  ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 155

Query: 132 VAQSN---------------------------------------LATIKGKSK------- 191
           VAQ+N                                       + TI  ++K       
Sbjct: 156 VAQTNHVAIEMTSNVSPLTQLDDQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDD 215

Query: 192 --------HQRKNDPKKLQ-----------------PKRKRSKKFSQPQQLD------LR 251
                    Q+   P  +Q                  K +R+KK   P+ +       L+
Sbjct: 216 GEGWITVTRQKGRQPNSIQKQSRFHQKYAKGSISYKKKGRRNKKMWNPKPIKGKDEDFLQ 275

Query: 252 LR--------------------------SHQAS------NYSSFSIPKNEYGHDRRRKSM 274
           LR                           H AS      NY S S   N      +R S+
Sbjct: 276 LRRSITLAEFLPRSFLEDHPEEILEVTACHAASIVEVDNNYGS-SKEVNNSNEINQRTSV 335

[Close]

BLAST of Lag0022916 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.9e-37
Identity = 147/406 (36.21%), Postives = 184/406 (45.32%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKGK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 18  IKESMVVHATHLKSFSKIKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLL 77

Query: 72  EEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DE
Sbjct: 78  ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 137

Query: 132 VAQSN---------------------------------------LATIKGKSK------- 191
           VAQ+N                                       + TI  ++K       
Sbjct: 138 VAQTNHVAIEMTSNVLPLTQLDDQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDD 197

Query: 192 --------HQRKNDPKKLQ-----------------PKRKRSKKFSQPQQ--------LD 251
                    Q+   P  +Q                  K +R+KK   P+         L 
Sbjct: 198 GEGWIIVTRQKGRQPNSIQKELRFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQ 257

Query: 252 LRL------------------------RSHQAS------NYSSFSIPKNEYGHDRRRKSM 274
           LRL                          H AS      NY S S   N      +R S+
Sbjct: 258 LRLTITLAEFLPRSFLEDHPEEILEVTACHAASIVEVDNNYGS-SKEVNNSNEINQRTSV 317

[Close]

BLAST of Lag0022916 vs. ExPASy TrEMBL
Match: A0A5A7ULK6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00840 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-36
Identity = 88/140 (62.86%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 2   RKEGRNNEETI----EESMVVNTTLPKSS----SKGKRQTNGA--HHLTLKERQKKIYPF 61
           +KE ++ E+ +    +ESMVVNTT  K S     + K++ +G+    LTLKERQ+K+YPF
Sbjct: 22  KKETKSAEKVVKSSMKESMVVNTTPLKFSKRKEGRAKKKDDGSERRRLTLKERQEKVYPF 81

Query: 62  PDADIPDMLEQLLEEQLIELPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILK 121
           PD+DI DMLEQLLE+QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LIL+
Sbjct: 82  PDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILR 141

Query: 122 LAKEGKIELDLDEVAQSNLA 132
           LA+E KIELDL+EVAQ+N A
Sbjct: 142 LAREKKIELDLEEVAQTNHA 161

The following BLAST results are available for this feature:

BLAST of Lag0022916 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056121.1	1.2e-43	44.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032121.1	7.9e-40	38.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031742032.1	4.8e-37	65.91	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742390.1	1.1e-36	65.91	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]
XP_031739134.1	1.1e-36	65.91	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]

BLAST of Lag0022916 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URH1	5.7e-44	44.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SRE2	3.8e-40	38.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C2C8	5.2e-37	35.96	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V7A0	8.9e-37	36.21	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7ULK6	1.5e-36	62.86	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Lag0022916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 824..848
None	No IPR available	PANTHER	PTHR33437	OS06G0361200 PROTEIN	coord: 28..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022916.1	Lag0022916.1	mRNA