Lag0022893 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022893
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr7: 40195659 .. 40198578 (-)
RNA-Seq ExpressionLag0022893
SyntenyLag0022893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCATCGAGACCACATCCGAATGAGAGGGATCCTGAGGACATGAAAGTATGGTCAAGATAAGCTTAAAAGAATTGATAGATACTAGCTATACTAACAAGGTGCACCTTCCTTTTCGGTGGCTCAATCATAGAAACTTTGAAGTTAAGCGTGCTTGGCTTGGAGAAGTTCTATGTTGGGTGACCTCCTAGGAATTTTCCTAGGAAGCATTTGAGTGAGGACAAAACATGCTAAAAAGACCCCGTGTTGGTTTGTGGGGATAGTCTTCACTCTTGGAAGTAGTTTAAGACGAGTATGGCAACGTGGTCAGGTCGCAGGGGAATGTCGAGGCCTTAGGTGCCGAATCCGGATTCCAAATCCTGAGCCTGGGGCATTACATTAACACCTTGCATAGCTCTCCTACTTGAATGTATACTTAATTAAGTACTAACGCACAAAAGTTTATAACATTGTAACTTATTTAACTTACCACATCATAAATCTAGCTTAATTTCTAACCATTAGTAACTACAACCAAGTTCTAAATGTGGATTTAGAATTATTTTGGATATACTTTGCTTGAATTACTCGTAAAAGTGTTTGGTGGGTTGGGTTCTTTTTCTTTATTAGTCTTATGTTTCTTTTTTGGATAATATTGTTCGTGTACGTGTTTTTGAAGATTGGGTTTGCTTTCATGTAGCAGTCAGTTTTTGTTTTTTAAAAAAAAAGGGGGGCAGGGAAGTTGGCTTTTCAGCCGGTCAAAGAGGAGGGAAAGGGGGGGGGGCGTTTCCTCCCAAATTCGGTCAATTGACCATTTAAAAAAAAAAATCGGAACTCTCTCTCCCACAGCCCTCTCTCTCTCCCCAATACCCTCTCTCTCTCCTTCTCGGTTCTCTCTCTATCTCAGCCCCTCTCTCGCTCCCTCTCGGCCTTGTCTCCCTCCGCCGCACGCCGACCGTCAACGTCGCCGCAGCTCGATGCCGTCGCGCCTCCACCGTCGCCGCTCGCCGACTGTAAGTTCTCTCTCTCTCTTCCGTTTTTTCTTGTCTCTCCCTCCCGTTTCCGTCTCCCTCTCTCTAACCCTGTTCGCTCTCTCTCTCCCGCGCCGCTGTCATGCCATCGTCGCCTCTGTCCCTATGGCACTTATGCTTTCCAGTGTATGCCATTTGGACTGTGTAATGCTCCAGCTACCTTTCAACGTTGTATGATGGCCATATTTTCAGACCTTGTAGAAGAGATTATGGAAGTTTTTATGGATGATTTTTCTGTTTTCGGTTCATCATTCGATAACTGTTTGCATAATCTCTCTCGTGTTTTGCAAAGATGCGAAGAAACTAACATGGTTTTAAATTGGGAAAAATGTCATTTTATGGTAAAAGAAGGGATAGTTTTAGATACATTGTATGGTAGCTGCATATGGTAAGAAATTTGCTGCATTGGAATGAAATGTTTATGTTTTGAAATGACTGCTTACTCCTGACATGAGAATGTGTATATGTTGTTCGGATTGAGGCTGAGGTGATGTGTTGCGTTAATTTCGAGAATATGGCTACTGCATATATGTGTTGTGTGATAGAAGCGAATGCGTGTCTGATGTATATTTTGTGGCTGGTTGGCATTGTTGTGGACGACGGGGAGTTTGTGTTTTTCTCTATTTAGGAGGGTTGCAGTAAAAAAAATAGCAAGAGTTAAGGGGTCCTAAAGGGAAAAGGATTAAGAAAGAGAAAGGAATAGGCTAGTGCCTTAGAAGAGGGTCATGTCAATTAAATACCTAGGACTGAGATGTATTAGACTGAAATAAGGGGCTAATTAATGGGCGGGACTTGGCTTCGCAAACTAGGTGCCATTTACTATTTGGGTCACAAGTTTCAAAGCTTTTCAATGTCTGCCTCAAATCCTCTCTCAGGAAAAATTCGTCAATGCTGCCGCCAAGAAAAAGTGTGAAGACATGCTCCAAAGAGATCCTCTTCCTGAGAGAGGATTTGAGGCAAACATTGAAAAGCTCCCCTCGTTTGTTTCAGGAGTGATCATCAAGCTTGGTTGGGAAATACTTTGTCAAAAGCCAGAGCCGGTTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAACGTTCAAGACAATGAGCTGTTCCAAACCAAGGTAAGGGGAAAATGGATAGATTGGTCACCATCAGCTATCAATGAGTTTTACAACCTTCATAATTTCCCCCATGCGGTTTTCAACTCTATGGAGATTGCTCCATCTAAAGAGCAGTTCCAATCAGCTCTAGTAACATGCACAGTTGAAGGAACAAGCTGGAAAATGACAAGGAACTCCATTCGAACACTGTTGGCAGCGTACCTAAAGCCCGAAGCAAATGTAGTGCATACCTTTGCGAGGAGTAGGTTGCTCCCCACCACTCATGACACCACTGTGTCTAATGAAAGAGTTCTCTTAGTTTTTTCCATCTTGATGATTCTGAGCATTGACGTGGGGAGGCTCTTGGCAAAGGAGATTTTGGCTTGTTCAAAAAGGAAGGTAGGAAGGTTGTTTTTCCCAAATCTTATTACAGCTTTATGTTTGAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAAATTTTAATGGACAAGGGGATAATAGACTTAGCATCTATAGCAAGATTGTATGGGGAGAGTAAAGGGAGGTCAAGAACAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAGAATGATGAGGCGAATGGAACACAGTGAGAATCAGCAAAAGGCCTACTGGCAATACGCTCATCACAGAGACTCTGCCATGGAAAAAACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCATCAGGTTTATTTGACCCGTGGTGCCCTTCCCCATCTCCAAGTGGGAATGAAAATGATGTTGATGATGATGCTGATCAAGAAGATTGA

mRNA sequence

ATGAATGCATCGAGACCACATCCGAATGAGAGGGATCCTGAGGACATGAAACCCCTCTCTCGCTCCCTCTCGGCCTTGTCTCCCTCCGCCGCACGCCGACCGTCAACGTCGCCGCAGCTCGATGCCGTCGCGCCTCCACCGTCGCCGCTCGCCGACTGTAAGTTCTCTCTCTCTCTTCCGTTTTTTCTTGTCTCTCCCTCCCGTTTCCGTCTCCCTCTCTCTAACCCTGTTCGCTCTCTCTCTCCCGCGCCGCTGTCATGCCATCGTCGCCTCTGTCCCTATGGCACTTATGCTTTCCAGTGTATGCCATTTGGACTGTGTAATGCTCCAGCTACCTTTCAACGTTGTATGATGGCCATATTTTCAGACCTTGTAGAAGAGATTATGGAAGTTTTTATGGATGATTTTTCTGTTTTCGGTTCATCATTCGATAACTGTTTGCATAATCTCTCTCGTGTTTTGCAAAGATGCGAAGAAACTAACATGGTTTTAAATTGGGAAAAATGTCATTTTATGGAAAAATTCGTCAATGCTGCCGCCAAGAAAAAGTGTGAAGACATGCTCCAAAGAGATCCTCTTCCTGAGAGAGGATTTGAGGCAAACATTGAAAAGCTCCCCTCGTTTGTTTCAGGAGTGATCATCAAGCTTGGTTGGGAAATACTTTGTCAAAAGCCAGAGCCGGTTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAACGTTCAAGACAATGAGCTGTTCCAAACCAAGGTAAGGGGAAAATGGATAGATTGGTCACCATCAGCTATCAATGAGTTTTACAACCTTCATAATTTCCCCCATGCGGTTTTCAACTCTATGGAGATTGCTCCATCTAAAGAGCAGTTCCAATCAGCTCTAGTAACATGCACAGTTGAAGGAACAAGCTGGAAAATGACAAGGAACTCCATTCGAACACTGTTGGCAGCGTACCTAAAGCCCGAAGCAAATGTAGTGCATACCTTTGCGAGGAGTAGGTTGCTCCCCACCACTCATGACACCACTGTGTCTAATGAAAGAGTTCTCTTAGTTTTTTCCATCTTGATGATTCTGAGCATTGACGTGGGGAGGCTCTTGGCAAAGGAGATTTTGGCTTGTTCAAAAAGGAAGGTAGGAAGGTTGTTTTTCCCAAATCTTATTACAGCTTTATGTTTGAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAAATTTTAATGGACAAGGGGATAATAGACTTAGCATCTATAGCAAGATTGTATGGGGAGAGTAAAGGGAGGTCAAGAACAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAGAATGATGAGGCGAATGGAACACAGTGAGAATCAGCAAAAGGCCTACTGGCAATACGCTCATCACAGAGACTCTGCCATGGAAAAAACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCATCAGGTTTATTTGACCCGTGGTGCCCTTCCCCATCTCCAAGTGGGAATGAAAATGATGTTGATGATGATGCTGATCAAGAAGATTGA

Coding sequence (CDS)

ATGAATGCATCGAGACCACATCCGAATGAGAGGGATCCTGAGGACATGAAACCCCTCTCTCGCTCCCTCTCGGCCTTGTCTCCCTCCGCCGCACGCCGACCGTCAACGTCGCCGCAGCTCGATGCCGTCGCGCCTCCACCGTCGCCGCTCGCCGACTGTAAGTTCTCTCTCTCTCTTCCGTTTTTTCTTGTCTCTCCCTCCCGTTTCCGTCTCCCTCTCTCTAACCCTGTTCGCTCTCTCTCTCCCGCGCCGCTGTCATGCCATCGTCGCCTCTGTCCCTATGGCACTTATGCTTTCCAGTGTATGCCATTTGGACTGTGTAATGCTCCAGCTACCTTTCAACGTTGTATGATGGCCATATTTTCAGACCTTGTAGAAGAGATTATGGAAGTTTTTATGGATGATTTTTCTGTTTTCGGTTCATCATTCGATAACTGTTTGCATAATCTCTCTCGTGTTTTGCAAAGATGCGAAGAAACTAACATGGTTTTAAATTGGGAAAAATGTCATTTTATGGAAAAATTCGTCAATGCTGCCGCCAAGAAAAAGTGTGAAGACATGCTCCAAAGAGATCCTCTTCCTGAGAGAGGATTTGAGGCAAACATTGAAAAGCTCCCCTCGTTTGTTTCAGGAGTGATCATCAAGCTTGGTTGGGAAATACTTTGTCAAAAGCCAGAGCCGGTTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAACGTTCAAGACAATGAGCTGTTCCAAACCAAGGTAAGGGGAAAATGGATAGATTGGTCACCATCAGCTATCAATGAGTTTTACAACCTTCATAATTTCCCCCATGCGGTTTTCAACTCTATGGAGATTGCTCCATCTAAAGAGCAGTTCCAATCAGCTCTAGTAACATGCACAGTTGAAGGAACAAGCTGGAAAATGACAAGGAACTCCATTCGAACACTGTTGGCAGCGTACCTAAAGCCCGAAGCAAATGTAGTGCATACCTTTGCGAGGAGTAGGTTGCTCCCCACCACTCATGACACCACTGTGTCTAATGAAAGAGTTCTCTTAGTTTTTTCCATCTTGATGATTCTGAGCATTGACGTGGGGAGGCTCTTGGCAAAGGAGATTTTGGCTTGTTCAAAAAGGAAGGTAGGAAGGTTGTTTTTCCCAAATCTTATTACAGCTTTATGTTTGAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAAATTTTAATGGACAAGGGGATAATAGACTTAGCATCTATAGCAAGATTGTATGGGGAGAGTAAAGGGAGGTCAAGAACAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAGAATGATGAGGCGAATGGAACACAGTGAGAATCAGCAAAAGGCCTACTGGCAATACGCTCATCACAGAGACTCTGCCATGGAAAAAACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCATCAGGTTTATTTGACCCGTGGTGCCCTTCCCCATCTCCAAGTGGGAATGAAAATGATGTTGATGATGATGCTGATCAAGAAGATTGA

Protein sequence

MNASRPHPNERDPEDMKPLSRSLSALSPSAARRPSTSPQLDAVAPPPSPLADCKFSLSLPFFLVSPSRFRLPLSNPVRSLSPAPLSCHRRLCPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSRVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFEANIEKLPSFVSGVIIKLGWEILCQKPEPVVVPLVREFYANVQDNELFQTKVRGKWIDWSPSAINEFYNLHNFPHAVFNSMEIAPSKEQFQSALVTCTVEGTSWKMTRNSIRTLLAAYLKPEANVVHTFARSRLLPTTHDTTVSNERVLLVFSILMILSIDVGRLLAKEILACSKRKVGRLFFPNLITALCLKAQVQVDEDEEILMDKGIIDLASIARLYGESKGRSRTNMVCGVEEILRQQRRMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGLFDPWCPSPSPSGNENDVDDDADQED
Homology
BLAST of Lag0022893 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 182.6 bits (462), Expect = 8.8e-42
Identity = 125/349 (35.82%), Postives = 180/349 (51.58%), Query Frame = 0

Query: 168 KCHFMEKFVNAAAKKKCEDMLQRDPL-PERGF----EANIEKLPSFVSGVIIKLGWEILC 227
           K H   KF   AA  + E+ +Q  PL  E+GF       + +LP F++ VI +  W+  C
Sbjct: 18  KAHKAVKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFC 77

Query: 228 QKPEPVVVPLVREFYANVQDNELFQTKVRGKWIDWSPSAINEFYNLHNFPHAVFNSMEIA 287
             PE  +VPLVREFYAN+ D E     VRG  + WS  AIN  + L + P    +     
Sbjct: 78  AHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQN 137

Query: 288 PSKEQFQSALVTCTVEGTSWKMTRNSIRTLLAAYLKPEANVVHTFARSRLLPTTHDTTVS 347
            +++   + L T    G  W ++     T + + L P A V + F +SRLLPTTH  TVS
Sbjct: 138 ITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVS 197

Query: 348 NERVLLVFSILMILSIDVGRLLAKEILACSKRKVGRLFFPNLITALCLKAQVQVDEDEEI 407
            +R+LL+ S+L+  SI+VGR++  EI AC+ RK G LFFP+LIT LC  A+     +EE 
Sbjct: 198 KDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 257

Query: 408 LMDKGIIDLASIARLYGESKGRS---------------RTN-----MVCGVEEILRQQR- 467
           L + G ID  ++AR+  E    S               RTN      +  +E+ L QQ  
Sbjct: 258 LHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEV 317

Query: 468 ---RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP 488
               MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP FP
Sbjct: 318 QQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFP 364

BLAST of Lag0022893 vs. NCBI nr
Match: XP_038981146.1 (uncharacterized protein LOC120110396 [Phoenix dactylifera])

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-37
Identity = 90/158 (56.96%), Postives = 105/158 (66.46%), Query Frame = 0

Query: 79   SLSPAPLSCHRRLCPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSV 138
            S+SP         CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD VE+IMEVFMDDFSV
Sbjct: 920  SISPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDFVEKIMEVFMDDFSV 979

Query: 139  FGSSFDNCLHNLSRVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGF 198
            FGSSFD+CL NLSRVLQRCEETN+VLNWEKCHFME+          E ++    +  RG 
Sbjct: 980  FGSSFDSCLDNLSRVLQRCEETNLVLNWEKCHFMEQ----------EGIVLGHKISARGL 1039

Query: 199  EANIEKLPSFVSGVIIKLGWEILCQKPEPVVVPLVREF 237
            E +  K+             EI+ + P P+ V  VR F
Sbjct: 1040 EVDRAKI-------------EIIKKLPPPINVKGVRSF 1054

BLAST of Lag0022893 vs. NCBI nr
Match: XP_038972405.1 (uncharacterized protein LOC120104748 [Phoenix dactylifera])

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-36
Identity = 90/147 (61.22%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 79   SLSPAPLSCHRRLCPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSV 138
            S+SP         CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD VE+IMEVFMDDFSV
Sbjct: 958  SISPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDFVEKIMEVFMDDFSV 1017

Query: 139  FGSSFDNCLHNLSRVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGF 198
            FGSSFD+CL NLSRVLQRCEETN+VLNWEKCHFM +          E ++    +  RG 
Sbjct: 1018 FGSSFDSCLDNLSRVLQRCEETNLVLNWEKCHFMVQ----------EGIVLGHKISARGL 1077

Query: 199  EAN------IEKL--PSFVSGVIIKLG 218
            E +      IEKL  P+ V GV   LG
Sbjct: 1078 EVDRAKIEIIEKLPPPTNVKGVRSFLG 1094

BLAST of Lag0022893 vs. NCBI nr
Match: XP_038973683.1 (uncharacterized protein LOC120105384 [Phoenix dactylifera])

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-36
Identity = 90/147 (61.22%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 79   SLSPAPLSCHRRLCPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSV 138
            S+SP         CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD VE+IMEVFMDDFSV
Sbjct: 958  SISPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDFVEKIMEVFMDDFSV 1017

Query: 139  FGSSFDNCLHNLSRVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGF 198
            FGSSFD+CL NLSRVLQRCEETN+VLNWEKCHFM +          E ++    +  RG 
Sbjct: 1018 FGSSFDSCLDNLSRVLQRCEETNLVLNWEKCHFMVQ----------EGIVLGHKISARGL 1077

Query: 199  EAN------IEKL--PSFVSGVIIKLG 218
            E +      IEKL  P+ V GV   LG
Sbjct: 1078 EVDRAKIEIIEKLPPPTNVKGVRSFLG 1094

BLAST of Lag0022893 vs. NCBI nr
Match: XP_038976300.1 (uncharacterized protein LOC120107204 [Phoenix dactylifera])

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-36
Identity = 89/158 (56.33%), Postives = 103/158 (65.19%), Query Frame = 0

Query: 79   SLSPAPLSCHRRLCPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSV 138
            S+SP         CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD VE+IMEVFMDDFSV
Sbjct: 958  SISPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDFVEKIMEVFMDDFSV 1017

Query: 139  FGSSFDNCLHNLSRVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGF 198
            FGSSFD+CL NLSRVLQRCEETN+VLNWEKCHFM +          E ++    +  RG 
Sbjct: 1018 FGSSFDSCLDNLSRVLQRCEETNLVLNWEKCHFMVQ----------EGIILGHKISARGL 1077

Query: 199  EANIEKLPSFVSGVIIKLGWEILCQKPEPVVVPLVREF 237
            E +  K+             EI+ + P P  V  VR F
Sbjct: 1078 EVDRAKI-------------EIIEKLPPPTNVKGVRSF 1092

BLAST of Lag0022893 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 94  YGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSRV 153
           +G Y +  MPFGL NAPATFQRCM  I   L+ +   V++DD  VF +S D  L +L  V
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 385

Query: 154 LQRCEETNMVLNWEKCHFMEK 175
            ++  + N+ L  +KC F+++
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQ 406

BLAST of Lag0022893 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.3e-11
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 0

Query: 95  GTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSRVL 154
           G Y +  MPFGL NAPATFQRCM  I   L+ +   V++DD  +F +S    L+++  V 
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 155 QRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPL 194
            +  + N+ L  +KC F++K  N        D ++ +P+
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPI 424

BLAST of Lag0022893 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-10
Identity = 44/155 (28.39%), Postives = 71/155 (45.81%), Query Frame = 0

Query: 95  GTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSRVL 154
           G Y F  +PFGL NAPA FQR +  I  + + ++  V++DD  VF   +D    NL  VL
Sbjct: 243 GKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVL 302

Query: 155 QRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFE-----ANIEKLPSFV 214
               + N+ +N EK HF++  V         D ++ DP   R         ++++L  F+
Sbjct: 303 ASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFL 362

Query: 215 SGVIIKLGWEILCQKPEPVVVPLVREFYANVQDNE 245
                   +     K    +  L R  YAN++ ++
Sbjct: 363 GMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQ 397

BLAST of Lag0022893 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.6e-09
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 95  GTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSRVL 154
           G+Y F  +PFGL  AP +FQR M   FS +      ++MDD  V G S  + L NL+ V 
Sbjct: 435 GSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVF 494

Query: 155 QRCEETNMVLNWEKCHFMEKFVNAAAKK----------KCEDMLQRDPLP 195
            +C E N+ L+ EKC F    V     K          K  D++Q  P+P
Sbjct: 495 GKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVP 544

BLAST of Lag0022893 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-08
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 93  PYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLSR 152
           P G Y +  MPFGL NAP+TF R M   F DL    + V++DD  +F  S +    +L  
Sbjct: 709 PSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDT 768

Query: 153 VLQRCEETNMVLNWEKCHF 172
           VL+R +  N+++  +KC F
Sbjct: 769 VLERLKNENLIVKKKKCKF 785

BLAST of Lag0022893 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.3e-42
Identity = 125/349 (35.82%), Postives = 180/349 (51.58%), Query Frame = 0

Query: 168 KCHFMEKFVNAAAKKKCEDMLQRDPL-PERGF----EANIEKLPSFVSGVIIKLGWEILC 227
           K H   KF   AA  + E+ +Q  PL  E+GF       + +LP F++ VI +  W+  C
Sbjct: 18  KAHKAVKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFC 77

Query: 228 QKPEPVVVPLVREFYANVQDNELFQTKVRGKWIDWSPSAINEFYNLHNFPHAVFNSMEIA 287
             PE  +VPLVREFYAN+ D E     VRG  + WS  AIN  + L + P    +     
Sbjct: 78  AHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQN 137

Query: 288 PSKEQFQSALVTCTVEGTSWKMTRNSIRTLLAAYLKPEANVVHTFARSRLLPTTHDTTVS 347
            +++   + L T    G  W ++     T + + L P A V + F +SRLLPTTH  TVS
Sbjct: 138 ITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVS 197

Query: 348 NERVLLVFSILMILSIDVGRLLAKEILACSKRKVGRLFFPNLITALCLKAQVQVDEDEEI 407
            +R+LL+ S+L+  SI+VGR++  EI AC+ RK G LFFP+LIT LC  A+     +EE 
Sbjct: 198 KDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 257

Query: 408 LMDKGIIDLASIARLYGESKGRS---------------RTN-----MVCGVEEILRQQR- 467
           L + G ID  ++AR+  E    S               RTN      +  +E+ L QQ  
Sbjct: 258 LHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEV 317

Query: 468 ---RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP 488
               MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP FP
Sbjct: 318 QQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFP 364

BLAST of Lag0022893 vs. ExPASy TrEMBL
Match: A0A6P6X9H2 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113741122 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.8e-36
Identity = 82/134 (61.19%), Postives = 97/134 (72.39%), Query Frame = 0

Query: 92   CPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLS 151
            CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD +E+IME+FMDDFSV+GSSFD+CLHNL 
Sbjct: 909  CPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDYIEKIMEIFMDDFSVYGSSFDHCLHNLE 968

Query: 152  RVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFEAN------IEKL 211
             +LQRCEETN+VLNWEKCHFM K          E ++    +  +G E +      IEKL
Sbjct: 969  LILQRCEETNLVLNWEKCHFMVK----------EGIVLGHKISSKGIEVDQAKIEVIEKL 1028

Query: 212  --PSFVSGVIIKLG 218
              PS V G+   LG
Sbjct: 1029 PPPSNVKGIRSFLG 1032

BLAST of Lag0022893 vs. ExPASy TrEMBL
Match: A0A6P6TF62 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113700883 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.8e-36
Identity = 82/134 (61.19%), Postives = 97/134 (72.39%), Query Frame = 0

Query: 92  CPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLS 151
           CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD +E+IME+FMDDFSV+GSSFD+CLHNL 
Sbjct: 837 CPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDYIEKIMEIFMDDFSVYGSSFDHCLHNLE 896

Query: 152 RVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFEAN------IEKL 211
            +LQRCEETN+VLNWEKCHFM K          E ++    +  +G E +      IEKL
Sbjct: 897 LILQRCEETNLVLNWEKCHFMVK----------EGIVLGHKISSKGIEVDQAKIEVIEKL 956

Query: 212 --PSFVSGVIIKLG 218
             PS V G+   LG
Sbjct: 957 PPPSNVKGIRSFLG 960

BLAST of Lag0022893 vs. ExPASy TrEMBL
Match: A0A6P6XBM5 (uncharacterized protein LOC113740969 OS=Coffea arabica OX=13443 GN=LOC113740969 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-35
Identity = 82/134 (61.19%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 92  CPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLS 151
           CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD +E+IME+FMDDFSV+GSSFD CLHNL 
Sbjct: 815 CPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDYIEKIMEIFMDDFSVYGSSFDQCLHNLE 874

Query: 152 RVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFEAN------IEKL 211
            +LQRCEETN+VLNWEKCHFM K          E ++    +  +G E +      IEKL
Sbjct: 875 LILQRCEETNLVLNWEKCHFMVK----------EGIVLGHKISSKGIEVDQAKIEVIEKL 934

Query: 212 --PSFVSGVIIKLG 218
             PS V G+   LG
Sbjct: 935 PPPSNVKGIRSFLG 938

BLAST of Lag0022893 vs. ExPASy TrEMBL
Match: A0A6P6SU28 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113694771 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-35
Identity = 82/134 (61.19%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 92  CPYGTYAFQCMPFGLCNAPATFQRCMMAIFSDLVEEIMEVFMDDFSVFGSSFDNCLHNLS 151
           CPYGT+AF+ MPFGLCNAPATFQRCMMAIFSD +E+IME+FMDDFSV+GSSFD CLHNL 
Sbjct: 705 CPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDYIEKIMEIFMDDFSVYGSSFDQCLHNLE 764

Query: 152 RVLQRCEETNMVLNWEKCHFMEKFVNAAAKKKCEDMLQRDPLPERGFEAN------IEKL 211
            +LQRCEETN+VLNWEKCHFM K          E ++    +  +G E +      IEKL
Sbjct: 765 LILQRCEETNLVLNWEKCHFMVK----------EGIVLGHKISSKGIEVDQAKIEVIEKL 824

Query: 212 --PSFVSGVIIKLG 218
             PS V G+   LG
Sbjct: 825 PPPSNVKGIRSFLG 828

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.18.8e-4235.82hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
XP_038981146.11.3e-3756.96uncharacterized protein LOC120110396 [Phoenix dactylifera][more]
XP_038972405.11.9e-3661.22uncharacterized protein LOC120104748 [Phoenix dactylifera][more]
XP_038973683.11.9e-3661.22uncharacterized protein LOC120105384 [Phoenix dactylifera][more]
XP_038976300.11.9e-3656.33uncharacterized protein LOC120107204 [Phoenix dactylifera][more]
Match NameE-valueIdentityDescription
P043234.9e-1141.98Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208258.3e-1135.35Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P94.1e-1028.39Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P103944.6e-0936.36Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Q993152.3e-0839.24Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A2P5BCG44.3e-4235.82Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A6P6X9H27.8e-3661.19Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113741122 PE=4 SV=1[more]
A0A6P6TF627.8e-3661.19Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113700883 PE=4 SV=1[more]
A0A6P6XBM51.0e-3561.19uncharacterized protein LOC113740969 OS=Coffea arabica OX=13443 GN=LOC113740969 ... [more]
A0A6P6SU281.0e-3561.19Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113694771 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 433..453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..515
NoneNo IPR availableCDDcd01647RT_LTRcoord: 92..177
e-value: 3.08241E-33
score: 122.704
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 84..184
e-value: 9.0E-25
score: 89.4
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 93..173
e-value: 4.1E-13
score: 49.4
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 92..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022893.1Lag0022893.1mRNA