Lag0022878 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022878
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr7: 40019617 .. 40021479 (-)
RNA-Seq ExpressionLag0022878
SyntenyLag0022878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTGTAATTAACACCGAAGAAAGTCGTCAACCCACCAAGAAGGACATCCTGATCCTTAGTGATAAAATATAAATCATCTATTTGTCTTGGGCTGGTTTCTTTTCATATGGGCCTTTGTCTTTTATCTATTCTTAGCATCGTGCCCTATTTTTATGCTATTTATGCTTTATGTTGCTGCTGCTGTATTGAACAATTCGATTCCTATCTTTCTTAATTATCAGAACATACCTTCGTCACCTTTCTCTTCCTCCTCTAATTTTCATTTTTATATGGTATCAGAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG

mRNA sequence

ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG

Coding sequence (CDS)

ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG

Protein sequence

MNQNIEPFKYMGHTEEAKSFAFYVLASPKSPALASCNNELSHQNSSKVYPKYTSSVFSSAMASDASSSITSTGPISNPIDNILTPDTTPVVTPVTQRGKAPIPPSQPNFVPPSPRPNFSMNPTSSTPPFQPYQPQLFYPTQPSYFQPYYPSNFSRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMISNDSYHPDEN
Homology
BLAST of Lag0022878 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 424.1 bits (1089), Expect = 1.8e-114
Identity = 222/370 (60.00%), Postives = 274/370 (74.05%), Query Frame = 0

Query: 164 FPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHG 223
           FPP   PN   QP    P PF+ NP+PTLPQPL VKLND NFLLWKNQL+N V+ANGL G
Sbjct: 3   FPPP-TPNFLAQP----PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRG 62

Query: 224 FLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIW 283
           +LDG++  PP+FLD  Q QPNP +  WERYNR +MCWIYSSLSEEKMGE+VSLET  +IW
Sbjct: 63  YLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIW 122

Query: 284 NSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLA 343
           +SL + YDSKTTARIMGLK++LQ +RKDG +VSQYL++IKE+ADKFAA+GEP+SYRDHLA
Sbjct: 123 SSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLA 182

Query: 344 HILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQ 403
           H+LDGLGSEYNAFVTSI NR+D+P+LEDVRSLL AYEARL+KQN V+QLN+AQANL +L 
Sbjct: 183 HVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLS 242

Query: 404 LHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSS-----FTPSILGRPQSQSF 463
           L +NS+R           PP       F  P H   S P+S      + SILG+P  QS 
Sbjct: 243 LQHNSKR----------PPP------KFSFPNHYKHSFPNSPISAAQSQSILGKP--QSV 302

Query: 464 QKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMI 523
            KWP +P+ ++ QCQICGK GH+A +C+HRTN+AY   SPQA+  ++    + P +    
Sbjct: 303 HKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS---- 345

Query: 524 SNDSYHPDEN 529
            ++  HPDE+
Sbjct: 363 GHEFQHPDES 345

BLAST of Lag0022878 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 240.7 bits (613), Expect = 2.8e-59
Identity = 156/397 (39.29%), Postives = 220/397 (55.42%), Query Frame = 0

Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNP---YPTLPQPLAVKLNDTNFLLWKN 213
           S PPAP     PP +NP P      P P     +P    P++ QPLAVKL+D N+++WK 
Sbjct: 10  STPPAP----PPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKE 69

Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
           QL+N+V+ANGL  FLDGS   PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E  +
Sbjct: 70  QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129

Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
           G+IV   +A++IW +L++ Y + + A +  L++ LQ I+K+GLT   Y+ + + + +  A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189

Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 393
           +IGEP++Y DHL + L GLG +YN FVTSIQ+++  P++E+  S                
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTS---------------- 249

Query: 394 QLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSIL 453
                                   P+SL  +P F   + N F P  +S+S P        
Sbjct: 250 ------------------------PTSLTRKPKFKNPSTNSF-PNSNSYSHPR------- 309

Query: 454 GRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSP-----QAMVT-- 513
           G+ ++ S+   PS P   RP+CQIC K GHTA  C+H TNL YQ P P      A +T  
Sbjct: 310 GQNRNPSYSPNPSSPK-PRPRCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN 353

Query: 514 ---NISSGQ------SLPDNV-SMISNDSYH--PDEN 529
              + SS Q      SLPD+   M S  S+H  PD N
Sbjct: 370 PSLSTSSNQPAMLLLSLPDSSWYMDSGASHHFTPDLN 353

BLAST of Lag0022878 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 235.7 bits (600), Expect = 9.0e-58
Identity = 115/240 (47.92%), Postives = 168/240 (70.00%), Query Frame = 0

Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKN 213
           S PPAP     PP +NP P     NP P     +P P +P   QPLAVKL+D N+++WK 
Sbjct: 10  STPPAP----PPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKE 69

Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
           QL+N+V+ANGL  FLDGS   PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E  +
Sbjct: 70  QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129

Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
           G+IV   +A++IW +L++ Y + + A +  L++ LQ I+K+GLT   Y+ + + + +  A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189

Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 391
           +IGEP++Y DHL + L GLG +YN FVTSIQ+++  P++E+V SLL +Y+ARLE+Q+  +
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

BLAST of Lag0022878 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-57
Identity = 140/315 (44.44%), Postives = 192/315 (60.95%), Query Frame = 0

Query: 151 SNFSRPPAPFPSF-FPPQNNPNPQLQPNNPYPLPFTPNP-YPTLPQPLAVKLNDTNFLLW 210
           S+ + P    P+   PP N PN Q Q     P P  P P  P++ QP  +KL+  N+L+W
Sbjct: 6   SSSNNPSTGNPTIQMPPTNIPNVQDQIIGAQP-PLPPLPILPSMNQPFTIKLDADNYLIW 65

Query: 211 KNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEE 270
           KNQL+NV++ANGL  F+DGS P PPRF D  +Q  N ++I W+R+NR IM WIY+SL++ 
Sbjct: 66  KNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQG 125

Query: 271 KMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADK 330
            MG+IV   +A EIW +L + Y S + A+I  L+++LQ +RKDGLT  +Y+ + K + + 
Sbjct: 126 VMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNT 185

Query: 331 FAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNV 390
            AA+GEP+S +DHL ++  GL  EYNAFVTSI  R DN  LE++ SLL +YE RLE QN 
Sbjct: 186 LAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNA 245

Query: 391 VEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPF-NPT---NLNFFSPQHSSFSQP-- 450
             QL+  QANL+ L ++             P RP F NP      NF +      S P  
Sbjct: 246 SAQLSSLQANLAHLNINKK-----------PYRPNFSNPVGHFTQNFQNRTQQFQSHPPN 305

Query: 451 -SSFTPSILGRPQSQ 457
            + F PSILG+PQ +
Sbjct: 306 SNQFQPSILGKPQGK 308

BLAST of Lag0022878 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 232.3 bits (591), Expect = 9.9e-57
Identity = 145/369 (39.30%), Postives = 198/369 (53.66%), Query Frame = 0

Query: 162 SFFPPQNNPNPQLQPN---NPYP-LPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVL 221
           S FPP    N     N   NP P +     P P+L Q L++KL++TN LL K+QL+NV++
Sbjct: 2   STFPPTPASNSNTTTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVII 61

Query: 222 ANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLE 281
           ANGL  F+D    +PP++LD   +Q NP+F+ W+R N+ +M WIYSSL+   +G+IV   
Sbjct: 62  ANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYS 121

Query: 282 TAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPIS 341
           TA +IW SL   Y+S + A +M L SQLQ+I+K  + +S+YLS++K V D+FA IGEP+S
Sbjct: 122 TARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLS 181

Query: 342 YRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQA 401
           YRD L  IL+GL  EY+ FVTSI NRSD P+L++V SLL  YE RL ++++ + LN  QA
Sbjct: 182 YRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQA 241

Query: 402 NLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQS 461
           N                    P +P +N                                
Sbjct: 242 N--------------------PRQPGYNN------------------------------- 301

Query: 462 FQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTP-SPQAMVTNISSGQSLPDNVS 521
                     + PQCQICGK GH AL  +HRTNL Y  P  P A   N +        +S
Sbjct: 302 ----------SIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPIS 309

Query: 522 MISNDSYHP 526
            +   S  P
Sbjct: 362 AMLTTSAAP 309

BLAST of Lag0022878 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-23
Identity = 83/338 (24.56%), Postives = 155/338 (45.86%), Query Frame = 0

Query: 199 KLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFL-DDQQQQPNPDFITWERYNRFI 258
           KL  TN+L+W  Q+  +     L GFLDGS   PP  +  D   + NPD+  W+R ++ I
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 259 MCWIYSSLSEEKMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQ 318
              +  ++S      +    TAA+IW +L+K Y + +   +  L++QL++  K   T+  
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144

Query: 319 YLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLF 378
           Y+  +    D+ A +G+P+ + + +  +L+ L  EY   +  I  +   P L ++   L 
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204

Query: 379 AYEARLEKQNVVEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHS 438
            +E+++        L V+ A +  +  +  S R+T+             TN N    +++
Sbjct: 205 NHESKI--------LAVSSATVIPITANAVSHRNTT------------TTNNNNNGNRNN 264

Query: 439 SFSQPSSFTPSILGRPQSQSFQKWPSRPNLNRP---QCQICGKFGHTALIC----HHRTN 498
            +   ++   S   +P  QS   +    N ++P   +CQICG  GH+A  C    H  ++
Sbjct: 265 RYDNRNNNNNS---KPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSS 324

Query: 499 LAYQTP----SPQAMVTNISSGQSLPDNVSMISNDSYH 525
           +  Q P    +P     N++ G     N  ++ + + H
Sbjct: 325 VNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATH 339

BLAST of Lag0022878 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 8.6e-115
Identity = 222/370 (60.00%), Postives = 274/370 (74.05%), Query Frame = 0

Query: 164 FPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHG 223
           FPP   PN   QP    P PF+ NP+PTLPQPL VKLND NFLLWKNQL+N V+ANGL G
Sbjct: 3   FPPP-TPNFLAQP----PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRG 62

Query: 224 FLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIW 283
           +LDG++  PP+FLD  Q QPNP +  WERYNR +MCWIYSSLSEEKMGE+VSLET  +IW
Sbjct: 63  YLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIW 122

Query: 284 NSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLA 343
           +SL + YDSKTTARIMGLK++LQ +RKDG +VSQYL++IKE+ADKFAA+GEP+SYRDHLA
Sbjct: 123 SSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLA 182

Query: 344 HILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQ 403
           H+LDGLGSEYNAFVTSI NR+D+P+LEDVRSLL AYEARL+KQN V+QLN+AQANL +L 
Sbjct: 183 HVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLS 242

Query: 404 LHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSS-----FTPSILGRPQSQSF 463
           L +NS+R           PP       F  P H   S P+S      + SILG+P  QS 
Sbjct: 243 LQHNSKR----------PPP------KFSFPNHYKHSFPNSPISAAQSQSILGKP--QSV 302

Query: 464 QKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMI 523
            KWP +P+ ++ QCQICGK GH+A +C+HRTN+AY   SPQA+  ++    + P +    
Sbjct: 303 HKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS---- 345

Query: 524 SNDSYHPDEN 529
            ++  HPDE+
Sbjct: 363 GHEFQHPDES 345

BLAST of Lag0022878 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-59
Identity = 156/397 (39.29%), Postives = 220/397 (55.42%), Query Frame = 0

Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNP---YPTLPQPLAVKLNDTNFLLWKN 213
           S PPAP     PP +NP P      P P     +P    P++ QPLAVKL+D N+++WK 
Sbjct: 10  STPPAP----PPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKE 69

Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
           QL+N+V+ANGL  FLDGS   PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E  +
Sbjct: 70  QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129

Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
           G+IV   +A++IW +L++ Y + + A +  L++ LQ I+K+GLT   Y+ + + + +  A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189

Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 393
           +IGEP++Y DHL + L GLG +YN FVTSIQ+++  P++E+  S                
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTS---------------- 249

Query: 394 QLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSIL 453
                                   P+SL  +P F   + N F P  +S+S P        
Sbjct: 250 ------------------------PTSLTRKPKFKNPSTNSF-PNSNSYSHPR------- 309

Query: 454 GRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSP-----QAMVT-- 513
           G+ ++ S+   PS P   RP+CQIC K GHTA  C+H TNL YQ P P      A +T  
Sbjct: 310 GQNRNPSYSPNPSSPK-PRPRCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN 353

Query: 514 ---NISSGQ------SLPDNV-SMISNDSYH--PDEN 529
              + SS Q      SLPD+   M S  S+H  PD N
Sbjct: 370 PSLSTSSNQPAMLLLSLPDSSWYMDSGASHHFTPDLN 353

BLAST of Lag0022878 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.3e-58
Identity = 115/240 (47.92%), Postives = 168/240 (70.00%), Query Frame = 0

Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKN 213
           S PPAP     PP +NP P     NP P     +P P +P   QPLAVKL+D N+++WK 
Sbjct: 10  STPPAP----PPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKE 69

Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
           QL+N+V+ANGL  FLDGS   PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E  +
Sbjct: 70  QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129

Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
           G+IV   +A++IW +L++ Y + + A +  L++ LQ I+K+GLT   Y+ + + + +  A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189

Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 391
           +IGEP++Y DHL + L GLG +YN FVTSIQ+++  P++E+V SLL +Y+ARLE+Q+  +
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

BLAST of Lag0022878 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.4e-58
Identity = 140/315 (44.44%), Postives = 192/315 (60.95%), Query Frame = 0

Query: 151 SNFSRPPAPFPSF-FPPQNNPNPQLQPNNPYPLPFTPNP-YPTLPQPLAVKLNDTNFLLW 210
           S+ + P    P+   PP N PN Q Q     P P  P P  P++ QP  +KL+  N+L+W
Sbjct: 6   SSSNNPSTGNPTIQMPPTNIPNVQDQIIGAQP-PLPPLPILPSMNQPFTIKLDADNYLIW 65

Query: 211 KNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEE 270
           KNQL+NV++ANGL  F+DGS P PPRF D  +Q  N ++I W+R+NR IM WIY+SL++ 
Sbjct: 66  KNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQG 125

Query: 271 KMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADK 330
            MG+IV   +A EIW +L + Y S + A+I  L+++LQ +RKDGLT  +Y+ + K + + 
Sbjct: 126 VMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNT 185

Query: 331 FAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNV 390
            AA+GEP+S +DHL ++  GL  EYNAFVTSI  R DN  LE++ SLL +YE RLE QN 
Sbjct: 186 LAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNA 245

Query: 391 VEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPF-NPT---NLNFFSPQHSSFSQP-- 450
             QL+  QANL+ L ++             P RP F NP      NF +      S P  
Sbjct: 246 SAQLSSLQANLAHLNINKK-----------PYRPNFSNPVGHFTQNFQNRTQQFQSHPPN 305

Query: 451 -SSFTPSILGRPQSQ 457
            + F PSILG+PQ +
Sbjct: 306 SNQFQPSILGKPQGK 308

BLAST of Lag0022878 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.8e-57
Identity = 145/369 (39.30%), Postives = 198/369 (53.66%), Query Frame = 0

Query: 162 SFFPPQNNPNPQLQPN---NPYP-LPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVL 221
           S FPP    N     N   NP P +     P P+L Q L++KL++TN LL K+QL+NV++
Sbjct: 2   STFPPTPASNSNTTTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVII 61

Query: 222 ANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLE 281
           ANGL  F+D    +PP++LD   +Q NP+F+ W+R N+ +M WIYSSL+   +G+IV   
Sbjct: 62  ANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYS 121

Query: 282 TAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPIS 341
           TA +IW SL   Y+S + A +M L SQLQ+I+K  + +S+YLS++K V D+FA IGEP+S
Sbjct: 122 TARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLS 181

Query: 342 YRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQA 401
           YRD L  IL+GL  EY+ FVTSI NRSD P+L++V SLL  YE RL ++++ + LN  QA
Sbjct: 182 YRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQA 241

Query: 402 NLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQS 461
           N                    P +P +N                                
Sbjct: 242 N--------------------PRQPGYNN------------------------------- 301

Query: 462 FQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTP-SPQAMVTNISSGQSLPDNVS 521
                     + PQCQICGK GH AL  +HRTNL Y  P  P A   N +        +S
Sbjct: 302 ----------SIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPIS 309

Query: 522 MISNDSYHP 526
            +   S  P
Sbjct: 362 AMLTTSAAP 309

BLAST of Lag0022878 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-13
Identity = 40/192 (20.83%), Postives = 99/192 (51.56%), Query Frame = 0

Query: 195 PLAVKLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYN 254
           P+ + + ++N+  W+   +   L+  + G +DG++              N + + W++ +
Sbjct: 21  PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-----------LPTNANDVNWQKRD 80

Query: 255 RFIMCWIYSSLSEEK-MGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGL 314
             +   +Y +L+ ++  G  V+  T+ +IW  +K  + +   AR + L S+L+      +
Sbjct: 81  GIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDM 140

Query: 315 TVSQYLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVR 374
            V+ Y  ++K++AD    +  P++ R+ + ++L+GL  +++  +  I++R   P+ +D  
Sbjct: 141 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 200

Query: 375 SLLFAYEARLEK 386
           ++L   E RL++
Sbjct: 201 TMLQEEEDRLKR 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.8e-11460.00uncharacterized protein LOC111022315 [Momordica charantia][more]
GFZ12741.12.8e-5939.29UBX domain-containing protein [Actinidia rufa][more]
GFY85402.19.0e-5847.92hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
PON47862.11.5e-5744.44hypothetical protein TorRG33x02_321990 [Trema orientale][more]
RVW69807.19.9e-5739.30Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Q94HW27.5e-2324.56Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DQX78.6e-11560.00uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A7J0GPN01.4e-5939.29UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... [more]
A0A7J0EGI54.3e-5847.92Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A2P5BGF87.4e-5844.44Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A438GC624.8e-5739.30Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
AT1G34070.11.1e-1320.83CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 252..385
e-value: 1.3E-24
score: 86.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 403..464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 505..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 505..528
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 209..515
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 209..515

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022878.1Lag0022878.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding