Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTGTAATTAACACCGAAGAAAGTCGTCAACCCACCAAGAAGGACATCCTGATCCTTAGTGATAAAATATAAATCATCTATTTGTCTTGGGCTGGTTTCTTTTCATATGGGCCTTTGTCTTTTATCTATTCTTAGCATCGTGCCCTATTTTTATGCTATTTATGCTTTATGTTGCTGCTGCTGTATTGAACAATTCGATTCCTATCTTTCTTAATTATCAGAACATACCTTCGTCACCTTTCTCTTCCTCCTCTAATTTTCATTTTTATATGGTATCAGAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG
mRNA sequence
ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG
Coding sequence (CDS)
ATGAATCAAAATATAGAGCCTTTCAAGTATATGGGCCATACTGAAGAAGCTAAATCGTTTGCTTTCTATGTCTTGGCAAGTCCAAAATCCCCTGCATTAGCGTCATGCAATAACGAACTGAGTCACCAGAACAGTTCAAAAGTGTATCCTAAATATACTAGCTCTGTGTTTTCTTCAGCTATGGCGTCAGATGCTTCTTCTTCTATTACCTCTACTGGACCCATTTCTAATCCTATCGACAATATCCTTACACCAGACACCACACCTGTCGTCACCCCTGTTACCCAACGAGGAAAAGCTCCAATTCCTCCTTCTCAACCAAACTTTGTTCCCCCTTCTCCGAGACCAAATTTTTCGATGAATCCAACCTCCTCAACCCCACCATTTCAACCATACCAACCTCAACTTTTTTATCCAACCCAGCCCTCTTACTTTCAACCTTATTATCCATCTAATTTTTCCCGCCCGCCTGCTCCTTTTCCTTCGTTCTTTCCCCCACAAAATAATCCCAATCCTCAGCTTCAACCTAACAATCCCTATCCTCTTCCGTTTACTCCCAACCCTTACCCTACTTTGCCCCAACCCCTTGCAGTTAAGCTGAATGATACTAATTTTCTGTTGTGGAAAAACCAGTTGATGAATGTTGTTCTTGCTAATGGACTTCACGGCTTCCTTGATGGATCAGTACCTGCTCCTCCTCGTTTTCTTGATGATCAACAACAACAACCGAACCCGGATTTTATCACTTGGGAAAGGTATAATCGATTTATCATGTGTTGGATCTATTCGTCTCTTTCTGAAGAAAAGATGGGAGAAATTGTTAGTTTAGAAACCGCTGCTGAAATTTGGAATTCGTTAAAGAAATCTTATGATTCCAAAACCACTGCTAGGATTATGGGTCTTAAGTCTCAACTACAGAAAATTAGAAAGGATGGTCTAACCGTCAGTCAGTATTTATCTCAAATTAAAGAAGTAGCCGATAAATTCGCAGCCATAGGAGAACCTATCTCTTATCGAGATCACCTAGCTCACATCCTCGATGGCCTTGGGAGTGAGTACAACGCCTTTGTCACCTCTATACAAAATAGATCGGATAATCCGGCTCTCGAAGATGTCCGTAGTTTATTGTTCGCCTATGAAGCACGGCTGGAAAAACAAAATGTTGTAGAACAGCTTAATGTTGCTCAAGCAAATTTAAGTAGTCTTCAGTTGCACAATAACAGCCGTCGTCACACTTCCCGCCCATCTTCTCTACCTTCCAGACCTCCCTTCAATCCAACCAACCTTAACTTTTTTTCTCCTCAGCACTCATCATTTTCCCAACCTTCATCCTTCACCCCTAGTATTTTGGGTCGTCCTCAATCTCAATCTTTTCAGAAATGGCCATCTCGACCCAATCTCAATCGTCCACAGTGTCAAATATGTGGCAAGTTTGGGCACACCGCTCTTATTTGCCATCATCGAACGAACCTAGCTTATCAAACTCCTTCTCCCCAAGCAATGGTTACTAATATTTCCTCGGGTCAATCCTTGCCTGATAATGTCTCCATGATATCCAATGACTCCTACCATCCAGATGAGAATTAG
Protein sequence
MNQNIEPFKYMGHTEEAKSFAFYVLASPKSPALASCNNELSHQNSSKVYPKYTSSVFSSAMASDASSSITSTGPISNPIDNILTPDTTPVVTPVTQRGKAPIPPSQPNFVPPSPRPNFSMNPTSSTPPFQPYQPQLFYPTQPSYFQPYYPSNFSRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMISNDSYHPDEN
Homology
BLAST of Lag0022878 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 424.1 bits (1089), Expect = 1.8e-114
Identity = 222/370 (60.00%), Postives = 274/370 (74.05%), Query Frame = 0
Query: 164 FPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHG 223
FPP PN QP P PF+ NP+PTLPQPL VKLND NFLLWKNQL+N V+ANGL G
Sbjct: 3 FPPP-TPNFLAQP----PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRG 62
Query: 224 FLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIW 283
+LDG++ PP+FLD Q QPNP + WERYNR +MCWIYSSLSEEKMGE+VSLET +IW
Sbjct: 63 YLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIW 122
Query: 284 NSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLA 343
+SL + YDSKTTARIMGLK++LQ +RKDG +VSQYL++IKE+ADKFAA+GEP+SYRDHLA
Sbjct: 123 SSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLA 182
Query: 344 HILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQ 403
H+LDGLGSEYNAFVTSI NR+D+P+LEDVRSLL AYEARL+KQN V+QLN+AQANL +L
Sbjct: 183 HVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLS 242
Query: 404 LHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSS-----FTPSILGRPQSQSF 463
L +NS+R PP F P H S P+S + SILG+P QS
Sbjct: 243 LQHNSKR----------PPP------KFSFPNHYKHSFPNSPISAAQSQSILGKP--QSV 302
Query: 464 QKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMI 523
KWP +P+ ++ QCQICGK GH+A +C+HRTN+AY SPQA+ ++ + P +
Sbjct: 303 HKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS---- 345
Query: 524 SNDSYHPDEN 529
++ HPDE+
Sbjct: 363 GHEFQHPDES 345
BLAST of Lag0022878 vs. NCBI nr
Match:
GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])
HSP 1 Score: 240.7 bits (613), Expect = 2.8e-59
Identity = 156/397 (39.29%), Postives = 220/397 (55.42%), Query Frame = 0
Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNP---YPTLPQPLAVKLNDTNFLLWKN 213
S PPAP PP +NP P P P +P P++ QPLAVKL+D N+++WK
Sbjct: 10 STPPAP----PPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKE 69
Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
QL+N+V+ANGL FLDGS PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E +
Sbjct: 70 QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129
Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
G+IV +A++IW +L++ Y + + A + L++ LQ I+K+GLT Y+ + + + + A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189
Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 393
+IGEP++Y DHL + L GLG +YN FVTSIQ+++ P++E+ S
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTS---------------- 249
Query: 394 QLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSIL 453
P+SL +P F + N F P +S+S P
Sbjct: 250 ------------------------PTSLTRKPKFKNPSTNSF-PNSNSYSHPR------- 309
Query: 454 GRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSP-----QAMVT-- 513
G+ ++ S+ PS P RP+CQIC K GHTA C+H TNL YQ P P A +T
Sbjct: 310 GQNRNPSYSPNPSSPK-PRPRCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN 353
Query: 514 ---NISSGQ------SLPDNV-SMISNDSYH--PDEN 529
+ SS Q SLPD+ M S S+H PD N
Sbjct: 370 PSLSTSSNQPAMLLLSLPDSSWYMDSGASHHFTPDLN 353
BLAST of Lag0022878 vs. NCBI nr
Match:
GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])
HSP 1 Score: 235.7 bits (600), Expect = 9.0e-58
Identity = 115/240 (47.92%), Postives = 168/240 (70.00%), Query Frame = 0
Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKN 213
S PPAP PP +NP P NP P +P P +P QPLAVKL+D N+++WK
Sbjct: 10 STPPAP----PPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKE 69
Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
QL+N+V+ANGL FLDGS PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E +
Sbjct: 70 QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129
Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
G+IV +A++IW +L++ Y + + A + L++ LQ I+K+GLT Y+ + + + + A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189
Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 391
+IGEP++Y DHL + L GLG +YN FVTSIQ+++ P++E+V SLL +Y+ARLE+Q+ +
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0022878 vs. NCBI nr
Match:
PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])
HSP 1 Score: 235.0 bits (598), Expect = 1.5e-57
Identity = 140/315 (44.44%), Postives = 192/315 (60.95%), Query Frame = 0
Query: 151 SNFSRPPAPFPSF-FPPQNNPNPQLQPNNPYPLPFTPNP-YPTLPQPLAVKLNDTNFLLW 210
S+ + P P+ PP N PN Q Q P P P P P++ QP +KL+ N+L+W
Sbjct: 6 SSSNNPSTGNPTIQMPPTNIPNVQDQIIGAQP-PLPPLPILPSMNQPFTIKLDADNYLIW 65
Query: 211 KNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEE 270
KNQL+NV++ANGL F+DGS P PPRF D +Q N ++I W+R+NR IM WIY+SL++
Sbjct: 66 KNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQG 125
Query: 271 KMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADK 330
MG+IV +A EIW +L + Y S + A+I L+++LQ +RKDGLT +Y+ + K + +
Sbjct: 126 VMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNT 185
Query: 331 FAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNV 390
AA+GEP+S +DHL ++ GL EYNAFVTSI R DN LE++ SLL +YE RLE QN
Sbjct: 186 LAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNA 245
Query: 391 VEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPF-NPT---NLNFFSPQHSSFSQP-- 450
QL+ QANL+ L ++ P RP F NP NF + S P
Sbjct: 246 SAQLSSLQANLAHLNINKK-----------PYRPNFSNPVGHFTQNFQNRTQQFQSHPPN 305
Query: 451 -SSFTPSILGRPQSQ 457
+ F PSILG+PQ +
Sbjct: 306 SNQFQPSILGKPQGK 308
BLAST of Lag0022878 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 232.3 bits (591), Expect = 9.9e-57
Identity = 145/369 (39.30%), Postives = 198/369 (53.66%), Query Frame = 0
Query: 162 SFFPPQNNPNPQLQPN---NPYP-LPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVL 221
S FPP N N NP P + P P+L Q L++KL++TN LL K+QL+NV++
Sbjct: 2 STFPPTPASNSNTTTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVII 61
Query: 222 ANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLE 281
ANGL F+D +PP++LD +Q NP+F+ W+R N+ +M WIYSSL+ +G+IV
Sbjct: 62 ANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYS 121
Query: 282 TAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPIS 341
TA +IW SL Y+S + A +M L SQLQ+I+K + +S+YLS++K V D+FA IGEP+S
Sbjct: 122 TARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLS 181
Query: 342 YRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQA 401
YRD L IL+GL EY+ FVTSI NRSD P+L++V SLL YE RL ++++ + LN QA
Sbjct: 182 YRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQA 241
Query: 402 NLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQS 461
N P +P +N
Sbjct: 242 N--------------------PRQPGYNN------------------------------- 301
Query: 462 FQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTP-SPQAMVTNISSGQSLPDNVS 521
+ PQCQICGK GH AL +HRTNL Y P P A N + +S
Sbjct: 302 ----------SIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPIS 309
Query: 522 MISNDSYHP 526
+ S P
Sbjct: 362 AMLTTSAAP 309
BLAST of Lag0022878 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 7.5e-23
Identity = 83/338 (24.56%), Postives = 155/338 (45.86%), Query Frame = 0
Query: 199 KLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFL-DDQQQQPNPDFITWERYNRFI 258
KL TN+L+W Q+ + L GFLDGS PP + D + NPD+ W+R ++ I
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84
Query: 259 MCWIYSSLSEEKMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQ 318
+ ++S + TAA+IW +L+K Y + + + L++QL++ K T+
Sbjct: 85 YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144
Query: 319 YLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLF 378
Y+ + D+ A +G+P+ + + + +L+ L EY + I + P L ++ L
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204
Query: 379 AYEARLEKQNVVEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHS 438
+E+++ L V+ A + + + S R+T+ TN N +++
Sbjct: 205 NHESKI--------LAVSSATVIPITANAVSHRNTT------------TTNNNNNGNRNN 264
Query: 439 SFSQPSSFTPSILGRPQSQSFQKWPSRPNLNRP---QCQICGKFGHTALIC----HHRTN 498
+ ++ S +P QS + N ++P +CQICG GH+A C H ++
Sbjct: 265 RYDNRNNNNNS---KPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSS 324
Query: 499 LAYQTP----SPQAMVTNISSGQSLPDNVSMISNDSYH 525
+ Q P +P N++ G N ++ + + H
Sbjct: 325 VNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATH 339
BLAST of Lag0022878 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 424.1 bits (1089), Expect = 8.6e-115
Identity = 222/370 (60.00%), Postives = 274/370 (74.05%), Query Frame = 0
Query: 164 FPPQNNPNPQLQPNNPYPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVLANGLHG 223
FPP PN QP P PF+ NP+PTLPQPL VKLND NFLLWKNQL+N V+ANGL G
Sbjct: 3 FPPP-TPNFLAQP----PNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRG 62
Query: 224 FLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLETAAEIW 283
+LDG++ PP+FLD Q QPNP + WERYNR +MCWIYSSLSEEKMGE+VSLET +IW
Sbjct: 63 YLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIW 122
Query: 284 NSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPISYRDHLA 343
+SL + YDSKTTARIMGLK++LQ +RKDG +VSQYL++IKE+ADKFAA+GEP+SYRDHLA
Sbjct: 123 SSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLA 182
Query: 344 HILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQANLSSLQ 403
H+LDGLGSEYNAFVTSI NR+D+P+LEDVRSLL AYEARL+KQN V+QLN+AQANL +L
Sbjct: 183 HVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLS 242
Query: 404 LHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSS-----FTPSILGRPQSQSF 463
L +NS+R PP F P H S P+S + SILG+P QS
Sbjct: 243 LQHNSKR----------PPP------KFSFPNHYKHSFPNSPISAAQSQSILGKP--QSV 302
Query: 464 QKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSPQAMVTNISSGQSLPDNVSMI 523
KWP +P+ ++ QCQICGK GH+A +C+HRTN+AY SPQA+ ++ + P +
Sbjct: 303 HKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASPQALYHHVQPSPTHPSS---- 345
Query: 524 SNDSYHPDEN 529
++ HPDE+
Sbjct: 363 GHEFQHPDES 345
BLAST of Lag0022878 vs. ExPASy TrEMBL
Match:
A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 1.4e-59
Identity = 156/397 (39.29%), Postives = 220/397 (55.42%), Query Frame = 0
Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNP---YPTLPQPLAVKLNDTNFLLWKN 213
S PPAP PP +NP P P P +P P++ QPLAVKL+D N+++WK
Sbjct: 10 STPPAP----PPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKE 69
Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
QL+N+V+ANGL FLDGS PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E +
Sbjct: 70 QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129
Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
G+IV +A++IW +L++ Y + + A + L++ LQ I+K+GLT Y+ + + + + A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189
Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 393
+IGEP++Y DHL + L GLG +YN FVTSIQ+++ P++E+ S
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSVEEPTS---------------- 249
Query: 394 QLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSIL 453
P+SL +P F + N F P +S+S P
Sbjct: 250 ------------------------PTSLTRKPKFKNPSTNSF-PNSNSYSHPR------- 309
Query: 454 GRPQSQSFQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTPSP-----QAMVT-- 513
G+ ++ S+ PS P RP+CQIC K GHTA C+H TNL YQ P P A +T
Sbjct: 310 GQNRNPSYSPNPSSPK-PRPRCQICLKPGHTANKCYHHTNLNYQPPPPPPRNFNAYITPN 353
Query: 514 ---NISSGQ------SLPDNV-SMISNDSYH--PDEN 529
+ SS Q SLPD+ M S S+H PD N
Sbjct: 370 PSLSTSSNQPAMLLLSLPDSSWYMDSGASHHFTPDLN 353
BLAST of Lag0022878 vs. ExPASy TrEMBL
Match:
A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 4.3e-58
Identity = 115/240 (47.92%), Postives = 168/240 (70.00%), Query Frame = 0
Query: 154 SRPPAPFPSFFPPQNNPNPQLQPNNPYPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKN 213
S PPAP PP +NP P NP P +P P +P QPLAVKL+D N+++WK
Sbjct: 10 STPPAP----PPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKE 69
Query: 214 QLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKM 273
QL+N+V+ANGL FLDGS PPRFLD QQQQ NP+F +W+RYNR +M WIY+S++E +
Sbjct: 70 QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 129
Query: 274 GEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFA 333
G+IV +A++IW +L++ Y + + A + L++ LQ I+K+GLT Y+ + + + + A
Sbjct: 130 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 189
Query: 334 AIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVE 391
+IGEP++Y DHL + L GLG +YN FVTSIQ+++ P++E+V SLL +Y+ARLE+Q+ +
Sbjct: 190 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0022878 vs. ExPASy TrEMBL
Match:
A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 7.4e-58
Identity = 140/315 (44.44%), Postives = 192/315 (60.95%), Query Frame = 0
Query: 151 SNFSRPPAPFPSF-FPPQNNPNPQLQPNNPYPLPFTPNP-YPTLPQPLAVKLNDTNFLLW 210
S+ + P P+ PP N PN Q Q P P P P P++ QP +KL+ N+L+W
Sbjct: 6 SSSNNPSTGNPTIQMPPTNIPNVQDQIIGAQP-PLPPLPILPSMNQPFTIKLDADNYLIW 65
Query: 211 KNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEE 270
KNQL+NV++ANGL F+DGS P PPRF D +Q N ++I W+R+NR IM WIY+SL++
Sbjct: 66 KNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQG 125
Query: 271 KMGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADK 330
MG+IV +A EIW +L + Y S + A+I L+++LQ +RKDGLT +Y+ + K + +
Sbjct: 126 VMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNT 185
Query: 331 FAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNV 390
AA+GEP+S +DHL ++ GL EYNAFVTSI R DN LE++ SLL +YE RLE QN
Sbjct: 186 LAAVGEPVSCKDHLLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNA 245
Query: 391 VEQLNVAQANLSSLQLHNNSRRHTSRPSSLPSRPPF-NPT---NLNFFSPQHSSFSQP-- 450
QL+ QANL+ L ++ P RP F NP NF + S P
Sbjct: 246 SAQLSSLQANLAHLNINKK-----------PYRPNFSNPVGHFTQNFQNRTQQFQSHPPN 305
Query: 451 -SSFTPSILGRPQSQ 457
+ F PSILG+PQ +
Sbjct: 306 SNQFQPSILGKPQGK 308
BLAST of Lag0022878 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 232.3 bits (591), Expect = 4.8e-57
Identity = 145/369 (39.30%), Postives = 198/369 (53.66%), Query Frame = 0
Query: 162 SFFPPQNNPNPQLQPN---NPYP-LPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLMNVVL 221
S FPP N N NP P + P P+L Q L++KL++TN LL K+QL+NV++
Sbjct: 2 STFPPTPASNSNTTTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVII 61
Query: 222 ANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYNRFIMCWIYSSLSEEKMGEIVSLE 281
ANGL F+D +PP++LD +Q NP+F+ W+R N+ +M WIYSSL+ +G+IV
Sbjct: 62 ANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYS 121
Query: 282 TAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGLTVSQYLSQIKEVADKFAAIGEPIS 341
TA +IW SL Y+S + A +M L SQLQ+I+K + +S+YLS++K V D+FA IGEP+S
Sbjct: 122 TARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLS 181
Query: 342 YRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVRSLLFAYEARLEKQNVVEQLNVAQA 401
YRD L IL+GL EY+ FVTSI NRSD P+L++V SLL YE RL ++++ + LN QA
Sbjct: 182 YRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQA 241
Query: 402 NLSSLQLHNNSRRHTSRPSSLPSRPPFNPTNLNFFSPQHSSFSQPSSFTPSILGRPQSQS 461
N P +P +N
Sbjct: 242 N--------------------PRQPGYNN------------------------------- 301
Query: 462 FQKWPSRPNLNRPQCQICGKFGHTALICHHRTNLAYQTP-SPQAMVTNISSGQSLPDNVS 521
+ PQCQICGK GH AL +HRTNL Y P P A N + +S
Sbjct: 302 ----------SIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPIS 309
Query: 522 MISNDSYHP 526
+ S P
Sbjct: 362 AMLTTSAAP 309
BLAST of Lag0022878 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 75.9 bits (185), Expect = 1.1e-13
Identity = 40/192 (20.83%), Postives = 99/192 (51.56%), Query Frame = 0
Query: 195 PLAVKLNDTNFLLWKNQLMNVVLANGLHGFLDGSVPAPPRFLDDQQQQPNPDFITWERYN 254
P+ + + ++N+ W+ + L+ + G +DG++ N + + W++ +
Sbjct: 21 PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-----------LPTNANDVNWQKRD 80
Query: 255 RFIMCWIYSSLSEEK-MGEIVSLETAAEIWNSLKKSYDSKTTARIMGLKSQLQKIRKDGL 314
+ +Y +L+ ++ G V+ T+ +IW +K + + AR + L S+L+ +
Sbjct: 81 GIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDM 140
Query: 315 TVSQYLSQIKEVADKFAAIGEPISYRDHLAHILDGLGSEYNAFVTSIQNRSDNPALEDVR 374
V+ Y ++K++AD + P++ R+ + ++L+GL +++ + I++R P+ +D
Sbjct: 141 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 200
Query: 375 SLLFAYEARLEK 386
++L E RL++
Sbjct: 201 TMLQEEEDRLKR 201
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 1.8e-114 | 60.00 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
GFZ12741.1 | 2.8e-59 | 39.29 | UBX domain-containing protein [Actinidia rufa] | [more] |
GFY85402.1 | 9.0e-58 | 47.92 | hypothetical protein Acr_04g0001400 [Actinidia rufa] | [more] |
PON47862.1 | 1.5e-57 | 44.44 | hypothetical protein TorRG33x02_321990 [Trema orientale] | [more] |
RVW69807.1 | 9.9e-57 | 39.30 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 7.5e-23 | 24.56 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 8.6e-115 | 60.00 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A7J0GPN0 | 1.4e-59 | 39.29 | UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... | [more] |
A0A7J0EGI5 | 4.3e-58 | 47.92 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1 | [more] |
A0A2P5BGF8 | 7.4e-58 | 44.44 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... | [more] |
A0A438GC62 | 4.8e-57 | 39.30 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
Match Name | E-value | Identity | Description | |
AT1G34070.1 | 1.1e-13 | 20.83 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |