Lag0022668 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022668
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReplication-associated protein
Locationchr7: 35312723 .. 35315171 (+)
RNA-Seq ExpressionLag0022668
SyntenyLag0022668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGGATTCACGCACCGGGGAAGACATAACTGCATGTCAGCTGGAGAATGACGTTTTTATCTGGGAAACCCCAAATCCCCTGTATTTCAAGATGGTTTCACACACGACGCGACCGTTCCAGACACAGCACGACATAATCGAACTGGAGATTCGATTCAATCACAACCTTCGGAGGGCTTTGGGGATTCACAAATGTTTCATAACCTTGAAGATCTTAACTCGCTTACGACCTCCGACAGGGCTTTTCTTGCGAGTCTTTAAATTTCAATGTATGAAATATTAAGACATGTTAGGGGTCGTTTCTTTTTTTAATGTATTACGTGCTGTAGATCATATTATGTGGACAGTACTAGTTGGAACAATTTCAGTACATCGAAATCATATAATAAAAATGCGTCTTTAATTCATCACGCTGTTATAGACATAAATGCCACATTTAAATGTTACATATACAGGGATCGAACCATGTGTACATGCCTTCAACCATAATAACGCAATTTAATGATAGTGATTGAATTCGGACCATCTACATTGTTTCGCGGAACAGCGTGCCTAACGCGTAAAACCTTGATAACAACGCCTCTTATTGATAGCACGGTGACTACCATTCACCTTTACATACTAACGGTGCGGCACAGGATGGGCCTCTGCCAGGAATGCTAAAGATTAACTACCATGAGTTAGTCTACTGTATCGAGGATTGTTTAACACGGGCCAAGACAAACATGGCATCCACACCTCCCACATGATGTACACACACTGGTTGCGTATTCGTTTTCACAAACGATGTGGCCGACCCATGTGTAGTGCAAAGTCGGACATACACAGAAAGGTCCCCGTGTGTACTACATCGTTTCGGGCTTCATAAGACTGGACCGTGAACGATCCCTCGCATCATATGGGAATGTCCGACGTTCGACGTTCCTGGTAATCAATACGTTTACGGTAGGCCGGGATTCGCTTCCACAATTACCCGCCTATGTCTTGGGCAGTGGGGACAGGCACAGACAGCAACAGTTGGACGTTGAAGATCTACATCCGTCGCACCATCCCGACGAATGCTGTACGCGGTTAATCTACAAGTTGCCTCATTGTAAAGACGACAACGGACAACTGCAATTAAATCCCTTATCAGATCAAAGCCCAAAGTATCTGGGCTGTATTTTTCTTCAATCAATTGAAGATATTTAACGGCCAACATAACACGTAGTCCCTGCACAGTGGTGGGCAGGGGATTTAATAATGGATCGAACATGGCTGCATTACGACCCACGTATGAAGGCCTTTATATTGTGAAAGCCCAATAACTAAGCTTTCAAGGATCCCTGTGGTTGGTTGTGATTGGTCAGAAAACATAATGGTGGGGCCCACTATTTAAGCAGCCCTAAGGGCATCACGATAATATTCAGCGTGATGCCCCCTAGTATATAAATGGACCCGAAAGACCCAATTGCTTGGGAGTTTTGAGAGGACCCGATTGCCTCTGTACGGAGAGCGTCTCTCTCATACTTTACTATTTGTTAGGGTTTATACAATGCCTCGAACGAAGAAGTTCCTTGTGAATGCGAAAAACTATTTTCTTACTTATCCGAAGTGTTCATTGACGAAAGATGAAGTTCTTGCGCAGATCTTGCAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGTGTCAAAGATCAAGTTCGTTAAGGTTTGCAGGAAATTGCATCAAGACGACAATCTGCACATTCACGTCCTTCTGCAGTTTGAAGGGAAGTTCAAATGTCAGAACGAACGCCTCTTCGACCTCAGTTCCCCAACCTCGTCGCGACAGTTCCATCCGAACATACAAAGTGCAAAGTCTAGTTCCGATGTCAAAGCCTACATCAACAAGGACGGGGATACGATCGAATGGGGAACGTTTCAGGTGGACGGAAGAAGTTCTCGCGGAGGTCATCAAACCGCTAACGACGCTTGTGCAAAAGCTCTGAATTCTGGATCGGCTGATGCGGCGTTAAACATTATCAGAGAGTTTCTTCCGAAGGATTTCATTTTCGGTTTTCACAATCTACAATCAAACTTGGAAAGAATTTTTGCAAAACCACAAACGCCGTATGAATCCAGATTTTGTCCAAATTCGTTCACTAGGGTGCCTCGTGTAATCTTGGACTGGGCCGCGAAGAACGTCTGTGATTCCGCTGCGCGGCCGGATAGACCCATAAGTATAATCATAGAGGGACCAAGCAGAGTAGGCAAAACAGTTTGGGCACGATCATTGGGTAAACATAATTACTTATGTGGCCATTTGGATTTGAGCGGTAAAGTATATACTAATGACGCATGGTACAACGTGATAGATGACGTGGGAGGGTGGGCAGTGTTATGA

mRNA sequence

ATGGAATGGGATTCACGCACCGGGGAAGACATAACTGCATGTCAGCTGGAGAATGACGTTTTTATCTGGGAAACCCCAAATCCCCTGTATTTCAAGATGGTTTCACACACGACGCGACCGTTCCAGACACAGCACGACATAATCGAACTGGAGATTCGATTCAATCACAACCTTCGGAGGGCTTTGGGGATTCACAAATGTTTCATAACCTTGAAGATCTTAACTCGCTTACGACCTCCGACAGGGCTTTTCTTGCGAGTCTTTAAATTTCAATCGTGCCTAACGCGTAAAACCTTGATAACAACGCCTCTTATTGATAGCACGGTGACTACCATTCACCTTTACATACTAACGTGCAAAGTCGGACATACACAGAAAGGTCCCCGTGTGTACTACATCGTTTCGGGCTTCATAAGACTGGACCGTGAACGATCCCTCGCATCATATGGGAATGTCCGACGTTCGACGTTCCTGGTAATCAATACGTTTACGGTAGGCCGGGATTCGCTTCCACAATTACCCGCCTATGTCTTGGGCAGTGGGGACAGGCACAGACAGCAACAGTTGGACGTTGAAGATCTACATCCGTCGCACCATCCCGACGAATGCTGTACGCGGTTAATCTACAAGTTGCCTCATTGTAAAGACGACAACGGACAACTGCAATTAAATCCCTTATCAGATCAAAGCCCAAAGAAATTGCATCAAGACGACAATCTGCACATTCACGTCCTTCTGCAGTTTGAAGGGAAGTTCAAATGTCAGAACGAACGCCTCTTCGACCTCAGTTCCCCAACCTCGTCGCGACAGTTCCATCCGAACATACAAAGTGCAAAGTCTAGTTCCGATGTCAAAGCCTACATCAACAAGGACGGGGATACGATCGAATGGGGAACGTTTCAGGTGGACGGAAGAAGTTCTCGCGGAGGTCATCAAACCGCTAACGACGCTTGTGCAAAAGCTCTGAATTCTGGATCGGCTGATGCGGCGTTAAACATTATCAGAGAGTTTCTTCCGAAGGATTTCATTTTCGGTTTTCACAATCTACAATCAAACTTGGAAAGAATTTTTGCAAAACCACAAACGCCGTATGAATCCAGATTTTGTCCAAATTCGTTCACTAGGGTGCCTCGTGTAATCTTGGACTGGGCCGCGAAGAACGTCTGTGATTCCGCTGCGCGGCCGGATAGACCCATAAGTATAATCATAGAGGGACCAAGCAGAGTAGGCAAAACAGTTTGGGCACGATCATTGGGTAAACATAATTACTTATGTGGCCATTTGGATTTGAGCGGTAAAGTATATACTAATGACGCATGGTACAACGTGATAGATGACGTGGGAGGGTGGGCAGTGTTATGA

Coding sequence (CDS)

ATGGAATGGGATTCACGCACCGGGGAAGACATAACTGCATGTCAGCTGGAGAATGACGTTTTTATCTGGGAAACCCCAAATCCCCTGTATTTCAAGATGGTTTCACACACGACGCGACCGTTCCAGACACAGCACGACATAATCGAACTGGAGATTCGATTCAATCACAACCTTCGGAGGGCTTTGGGGATTCACAAATGTTTCATAACCTTGAAGATCTTAACTCGCTTACGACCTCCGACAGGGCTTTTCTTGCGAGTCTTTAAATTTCAATCGTGCCTAACGCGTAAAACCTTGATAACAACGCCTCTTATTGATAGCACGGTGACTACCATTCACCTTTACATACTAACGTGCAAAGTCGGACATACACAGAAAGGTCCCCGTGTGTACTACATCGTTTCGGGCTTCATAAGACTGGACCGTGAACGATCCCTCGCATCATATGGGAATGTCCGACGTTCGACGTTCCTGGTAATCAATACGTTTACGGTAGGCCGGGATTCGCTTCCACAATTACCCGCCTATGTCTTGGGCAGTGGGGACAGGCACAGACAGCAACAGTTGGACGTTGAAGATCTACATCCGTCGCACCATCCCGACGAATGCTGTACGCGGTTAATCTACAAGTTGCCTCATTGTAAAGACGACAACGGACAACTGCAATTAAATCCCTTATCAGATCAAAGCCCAAAGAAATTGCATCAAGACGACAATCTGCACATTCACGTCCTTCTGCAGTTTGAAGGGAAGTTCAAATGTCAGAACGAACGCCTCTTCGACCTCAGTTCCCCAACCTCGTCGCGACAGTTCCATCCGAACATACAAAGTGCAAAGTCTAGTTCCGATGTCAAAGCCTACATCAACAAGGACGGGGATACGATCGAATGGGGAACGTTTCAGGTGGACGGAAGAAGTTCTCGCGGAGGTCATCAAACCGCTAACGACGCTTGTGCAAAAGCTCTGAATTCTGGATCGGCTGATGCGGCGTTAAACATTATCAGAGAGTTTCTTCCGAAGGATTTCATTTTCGGTTTTCACAATCTACAATCAAACTTGGAAAGAATTTTTGCAAAACCACAAACGCCGTATGAATCCAGATTTTGTCCAAATTCGTTCACTAGGGTGCCTCGTGTAATCTTGGACTGGGCCGCGAAGAACGTCTGTGATTCCGCTGCGCGGCCGGATAGACCCATAAGTATAATCATAGAGGGACCAAGCAGAGTAGGCAAAACAGTTTGGGCACGATCATTGGGTAAACATAATTACTTATGTGGCCATTTGGATTTGAGCGGTAAAGTATATACTAATGACGCATGGTACAACGTGATAGATGACGTGGGAGGGTGGGCAGTGTTATGA

Protein sequence

MEWDSRTGEDITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLKILTRLRPPTGLFLRVFKFQSCLTRKTLITTPLIDSTVTTIHLYILTCKVGHTQKGPRVYYIVSGFIRLDRERSLASYGNVRRSTFLVINTFTVGRDSLPQLPAYVLGSGDRHRQQQLDVEDLHPSHHPDECCTRLIYKLPHCKDDNGQLQLNPLSDQSPKKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDVGGWAVL
Homology
[Close]
BLAST of Lag0022668 vs. NCBI nr
Match: ACY79444.1 (Rep [Sweet potato leaf curl virus])

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-88
Identity = 159/216 (73.61%), Postives = 185/216 (85.65%), Query Frame = 0 

Query: 232 KKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKD 291
           ++LH+D   H+HVLLQFEGKF+C N+RLFDL S T S  FHPNIQ AKSSSDVK+Y++KD
Sbjct: 48  RELHEDGQPHLHVLLQFEGKFQCTNQRLFDLVSQTRSAHFHPNIQRAKSSSDVKSYVDKD 107

Query: 292 GDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQS 351
           GDT+EWG FQVDGRS+RGG QTANDA A+ALN+GSA+AAL IIRE LP+DFIF FHNL+S
Sbjct: 108 GDTLEWGEFQVDGRSARGGQQTANDAAAEALNAGSAEAALQIIREKLPRDFIFQFHNLRS 167

Query: 352 NLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGK 411
           NL+RIF+ P + Y S F  +SF  VP +I DWAA+NV D+AARPDRPISI+IEGPSR+GK
Sbjct: 168 NLDRIFSPPPSVYSSPFSISSFNNVPDIISDWAAENVMDAAARPDRPISIVIEGPSRIGK 227

Query: 412 TVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           TVWARSLG HNYLCGHLDLS KVY+N AWYNVIDDV
Sbjct: 228 TVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDV 263

[Close]
BLAST of Lag0022668 vs. NCBI nr
Match: ACY79456.1 (Rep [Sweet potato leaf curl virus])

HSP 1 Score: 335.9 bits (860), Expect = 5.5e-88
Identity = 154/216 (71.30%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 232 KKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKD 291
           ++LH+D   H+HVLLQFEGKF+C+N+R FDL SPT S  FHPNIQ AKSSSDVK+Y++KD
Sbjct: 49  RELHEDGEPHLHVLLQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVDKD 108

Query: 292 GDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQS 351
           GDTIEWG FQ+DGRS+RGG QTANDA A+ALN+GS +AALN+I+E  PKDF+  FHN+ S
Sbjct: 109 GDTIEWGEFQIDGRSARGGQQTANDAYAQALNTGSKEAALNVIKELCPKDFVLQFHNINS 168

Query: 352 NLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGK 411
           NL+RIF+ P + Y S F  +S+  VP +I DWAA+NV DSAARPDRPISI+IEGPSR+GK
Sbjct: 169 NLDRIFSPPPSVYSSPFSSSSYNAVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGK 228

Query: 412 TVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           TVWARSLG HNYLCGHLDLS KVY+N AWYNVIDDV
Sbjct: 229 TVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDV 264

[Close]
BLAST of Lag0022668 vs. NCBI nr
Match: AGW16213.1 (replication-associated protein [Sweet potato leaf curl virus])

HSP 1 Score: 334.3 bits (856), Expect = 1.6e-87
Identity = 162/245 (66.12%), Postives = 188/245 (76.73%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC           L+ Q+P         K+LH+D   H+HVL+QFEGKF C N R FDL
Sbjct: 19  PHCSLSKEDCLAQLLNIQTPTNKKYIHIAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQVDGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSNHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQVDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           N+GS +AAL IIRE LP+ ++F FHNL SNL+RIF+ P + Y S F P+SF  VP +I D
Sbjct: 139 NAGSKEAALQIIREKLPEKYLFQFHNLVSNLDRIFSPPPSVYSSPFSPSSFNAVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

[Close]
BLAST of Lag0022668 vs. NCBI nr
Match: AFO66451.1 (replication-associated protein [Sweet potato mosaic virus-[ZA:WP:2011]])

HSP 1 Score: 333.6 bits (854), Expect = 2.7e-87
Identity = 163/245 (66.53%), Postives = 189/245 (77.14%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC     ++       Q+P         ++LH+D   HIHVLLQFEGKF C N+RLFDL
Sbjct: 19  PHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQ+DGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           NSGS +AAL IIRE LP+ FIF +HNL SNL+RIF+ P + Y S F  +SF  VP +I D
Sbjct: 139 NSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

[Close]
BLAST of Lag0022668 vs. NCBI nr
Match: YP_009338003.1 (replication-associated protein [Sweet potato mosaic virus] >APT69515.1 replication-associated protein [Sweet potato mosaic virus])

HSP 1 Score: 333.6 bits (854), Expect = 2.7e-87
Identity = 163/245 (66.53%), Postives = 189/245 (77.14%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC     ++       Q+P         ++LH+D   HIHVLLQFEGKF C N+RLFDL
Sbjct: 19  PHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQ+DGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           NSGS +AAL IIRE LP+ FIF +HNL SNL+RIF+ P + Y S F  +SF  VP +I D
Sbjct: 139 NSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

[Close]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match: P36279 (Replication-associated protein OS=Tomato leaf curl virus (strain Australia) OX=223353 GN=C1 PE=1 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 4.5e-85
Identity = 152/233 (65.24%), Postives = 180/233 (77.25%), Query Frame = 0 

Query: 222 QLNPLSDQSPKK-------LHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPN 281
           QLN L   + KK       LH++   H+HVL+QFEGKF+C+N+R FDL SPT S  FHPN
Sbjct: 31  QLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPN 90

Query: 282 IQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNII 341
           IQ AKSSSDVK+Y+ KDGDT+EWG FQ+DGRS+RGG Q+ANDA A+ALN+GS   ALN++
Sbjct: 91  IQGAKSSSDVKSYLEKDGDTLEWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVL 150

Query: 342 REFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAAR 401
           RE  PKD++  FHNL SNL+RIF  P   Y S F  +SF RVP  + +W A+NV D+AAR
Sbjct: 151 RELAPKDYVLQFHNLNSNLDRIFTPPLEVYVSPFLSSSFDRVPEELEEWVAENVKDAAAR 210

Query: 402 PDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           P RPISI+IEG SR GKTVWARSLG HNYLCGHLDLS KVY+NDAWYNVIDDV
Sbjct: 211 PLRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDV 263

[Close]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match: P38609 (Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 GN=C1 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.2e-83
Identity = 141/216 (65.28%), Postives = 174/216 (80.56%), Query Frame = 0 

Query: 232 KKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKD 291
           ++LH+D   H+H+L+QFEGKF C+N R FDL SPT S  FHPNIQ AKSSSDVK+YI+KD
Sbjct: 48  RELHEDGQPHLHMLIQFEGKFNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKD 107

Query: 292 GDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQS 351
           GD +EWGTFQ+DGRS+RGG QTANDA AKA+N+GS   AL++I+E  P+D+I  FHN+ S
Sbjct: 108 GDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSEALDVIKELAPRDYILHFHNINS 167

Query: 352 NLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGK 411
           NL+R+F  P  PY S F  +SF +VP  +  W ++NV D+AARP RP+SI+IEG SR GK
Sbjct: 168 NLDRVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGDSRTGK 227

Query: 412 TVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           T+WARSLG HNYLCGHLDLS KVY+N+AWYNVIDDV
Sbjct: 228 TMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDV 263

[Close]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match: P27260 (Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=C1 PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.1e-82
Identity = 141/230 (61.30%), Postives = 178/230 (77.39%), Query Frame = 0 

Query: 218 NGQLQLNPLSDQSPKKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQS 277
           N Q   N L  +  ++LH++   H+H+L+QFEGK+ C N+R FDL SPT S  FHPNIQ 
Sbjct: 34  NLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQG 93

Query: 278 AKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREF 337
           AKSSSDVK+YI+KDGD +EWGTFQ+DGRS+RGG QTANDA AKA+N+GS   AL++I+E 
Sbjct: 94  AKSSSDVKSYIDKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKEL 153

Query: 338 LPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDR 397
            P+D++  FHN+ SNL+++F  P  PY S F  +SF +VP  +  W ++NV D+AARP R
Sbjct: 154 APRDYVLHFHNINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWR 213

Query: 398 PISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           P+SI+IEG SR GKT WARSLG HNYLCGHLDLS KVY+N+AWYNVIDDV
Sbjct: 214 PVSIVIEGDSRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDV 263

[Close]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match: P14972 (Replication-associated protein OS=African cassava mosaic virus (isolate Nigerian) OX=222073 GN=AC1 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 7.9e-82
Identity = 147/227 (64.76%), Postives = 173/227 (76.21%), Query Frame = 0 

Query: 221 LQLNPLSDQSPKKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKS 280
           L  NP   +  ++LHQ+   H+H L+QFEGK    N RLFD   P+ S  FHPNIQ AKS
Sbjct: 36  LPSNPKFIKICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTNFHPNIQGAKS 95

Query: 281 SSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPK 340
           SSDVK+Y++KDGDT+EWG FQ+DGRS+RGG Q+ANDA AKALNSGS   ALN+IRE +PK
Sbjct: 96  SSDVKSYLDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPK 155

Query: 341 DFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPIS 400
           DF+  FHNL SNL+RIF +P  PY S F  +SF +VP  + +W A NV DSAARP RP S
Sbjct: 156 DFVLQFHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNS 215

Query: 401 IIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           I+IEG SR GKT+WARSLG HNYLCGHLDLS KV+ NDAWYNVIDDV
Sbjct: 216 IVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNDAWYNVIDDV 262

[Close]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match: P14982 (Replication-associated protein OS=African cassava mosaic virus (isolate West Kenyan 844) OX=10818 GN=AC1 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.0e-81
Identity = 148/227 (65.20%), Postives = 173/227 (76.21%), Query Frame = 0 

Query: 221 LQLNPLSDQSPKKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKS 280
           LQ NP   +  ++LHQ+   H+H L+QFEGK    N RLFD   P+ S  FHPNIQ AKS
Sbjct: 36  LQSNPKFIKICRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKS 95

Query: 281 SSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPK 340
           SSDVK+Y++KDGDT+EWG FQ+DGRS+RGG Q+ANDA AKALNSGS   ALN+IRE +PK
Sbjct: 96  SSDVKSYLDKDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPK 155

Query: 341 DFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPIS 400
           DF+  FHNL SNL+RIF +P  PY S F  +SF +VP  I +W A NV DSAARP RP S
Sbjct: 156 DFVLQFHNLNSNLDRIFQEPPAPYVSPFPCSSFDQVPVEIEEWVADNVRDSAARPWRPNS 215

Query: 401 IIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           I+IEG SR GKT+WARSLG HNYLCGHLDLS KV+ N AWYNVIDDV
Sbjct: 216 IVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDV 262

[Close]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match: D4HS99 (Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 7.0e-89
Identity = 159/216 (73.61%), Postives = 185/216 (85.65%), Query Frame = 0 

Query: 232 KKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKD 291
           ++LH+D   H+HVLLQFEGKF+C N+RLFDL S T S  FHPNIQ AKSSSDVK+Y++KD
Sbjct: 48  RELHEDGQPHLHVLLQFEGKFQCTNQRLFDLVSQTRSAHFHPNIQRAKSSSDVKSYVDKD 107

Query: 292 GDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQS 351
           GDT+EWG FQVDGRS+RGG QTANDA A+ALN+GSA+AAL IIRE LP+DFIF FHNL+S
Sbjct: 108 GDTLEWGEFQVDGRSARGGQQTANDAAAEALNAGSAEAALQIIREKLPRDFIFQFHNLRS 167

Query: 352 NLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGK 411
           NL+RIF+ P + Y S F  +SF  VP +I DWAA+NV D+AARPDRPISI+IEGPSR+GK
Sbjct: 168 NLDRIFSPPPSVYSSPFSISSFNNVPDIISDWAAENVMDAAARPDRPISIVIEGPSRIGK 227

Query: 412 TVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           TVWARSLG HNYLCGHLDLS KVY+N AWYNVIDDV
Sbjct: 228 TVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDV 263

[Close]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match: D4HSB1 (Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 2.6e-88
Identity = 154/216 (71.30%), Postives = 183/216 (84.72%), Query Frame = 0 

Query: 232 KKLHQDDNLHIHVLLQFEGKFKCQNERLFDLSSPTSSRQFHPNIQSAKSSSDVKAYINKD 291
           ++LH+D   H+HVLLQFEGKF+C+N+R FDL SPT S  FHPNIQ AKSSSDVK+Y++KD
Sbjct: 49  RELHEDGEPHLHVLLQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVDKD 108

Query: 292 GDTIEWGTFQVDGRSSRGGHQTANDACAKALNSGSADAALNIIREFLPKDFIFGFHNLQS 351
           GDTIEWG FQ+DGRS+RGG QTANDA A+ALN+GS +AALN+I+E  PKDF+  FHN+ S
Sbjct: 109 GDTIEWGEFQIDGRSARGGQQTANDAYAQALNTGSKEAALNVIKELCPKDFVLQFHNINS 168

Query: 352 NLERIFAKPQTPYESRFCPNSFTRVPRVILDWAAKNVCDSAARPDRPISIIIEGPSRVGK 411
           NL+RIF+ P + Y S F  +S+  VP +I DWAA+NV DSAARPDRPISI+IEGPSR+GK
Sbjct: 169 NLDRIFSPPPSVYSSPFSSSSYNAVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGK 228

Query: 412 TVWARSLGKHNYLCGHLDLSGKVYTNDAWYNVIDDV 448
           TVWARSLG HNYLCGHLDLS KVY+N AWYNVIDDV
Sbjct: 229 TVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDV 264

[Close]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match: A0A088BDT2 (Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 7.7e-88
Identity = 162/245 (66.12%), Postives = 188/245 (76.73%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC           L+ Q+P         K+LH+D   H+HVL+QFEGKF C N R FDL
Sbjct: 19  PHCSLSKEDCLAQLLNIQTPTNKKYIHIAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQVDGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSNHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQVDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           N+GS +AAL IIRE LP+ ++F FHNL SNL+RIF+ P + Y S F P+SF  VP +I D
Sbjct: 139 NAGSKEAALQIIREKLPEKYLFQFHNLVSNLDRIFSPPPSVYSSPFSPSSFNAVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

[Close]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match: A0A1L7B836 (Replication-associated protein OS=Sweet potato mosaic virus OX=1513528 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 163/245 (66.53%), Postives = 189/245 (77.14%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC     ++       Q+P         ++LH+D   HIHVLLQFEGKF C N+RLFDL
Sbjct: 19  PHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQ+DGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           NSGS +AAL IIRE LP+ FIF +HNL SNL+RIF+ P + Y S F  +SF  VP +I D
Sbjct: 139 NSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

[Close]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match: I7D0Y3 (Replication-associated protein OS=Sweet potato mosaic virus-[ZA:WP:2011] OX=1560692 GN=C1 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 163/245 (66.53%), Postives = 189/245 (77.14%), Query Frame = 0 

Query: 212 PHCKDDNGQLQLNPLSDQSP---------KKLHQDDNLHIHVLLQFEGKFKCQNERLFDL 271
           PHC     ++       Q+P         ++LH+D   HIHVLLQFEGKF C N+RLFDL
Sbjct: 19  PHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDL 78

Query: 272 SSPTSSRQFHPNIQSAKSSSDVKAYINKDGDTIEWGTFQVDGRSSRGGHQTANDACAKAL 331
            SPT S  FHPNIQ AKSSSDVK+Y++KDGDT+ WG FQ+DGRS+RGG QTANDA A+AL
Sbjct: 79  VSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEAL 138

Query: 332 NSGSADAALNIIREFLPKDFIFGFHNLQSNLERIFAKPQTPYESRFCPNSFTRVPRVILD 391
           NSGS +AAL IIRE LP+ FIF +HNL SNL+RIF+ P + Y S F  +SF  VP +I D
Sbjct: 139 NSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISD 198

Query: 392 WAAKNVCDSAARPDRPISIIIEGPSRVGKTVWARSLGKHNYLCGHLDLSGKVYTNDAWYN 448
           WAA+NV DSAARPDRPISI+IEGPSR+GKTVWARSLG HNYLCGHLDLS KVY+N AWYN
Sbjct: 199 WAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYN 258

The following BLAST results are available for this feature:
BLAST of Lag0022668 vs. NCBI nr
Match NameE-valueIdentityDescription
ACY79444.11.4e-8873.61Rep [Sweet potato leaf curl virus][more]
ACY79456.15.5e-8871.30Rep [Sweet potato leaf curl virus][more]
AGW16213.11.6e-8766.12replication-associated protein [Sweet potato leaf curl virus][more]
AFO66451.12.7e-8766.53replication-associated protein [Sweet potato mosaic virus-[ZA:WP:2011]][more]
YP_009338003.12.7e-8766.53replication-associated protein [Sweet potato mosaic virus] >APT69515.1 replicati... [more]
BLAST of Lag0022668 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P362794.5e-8565.24Replication-associated protein OS=Tomato leaf curl virus (strain Australia) OX=2... [more]
P386093.2e-8365.28Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus (isolat... [more]
P272602.1e-8261.30Replication-associated protein OS=Tomato yellow leaf curl Sardinia virus OX=1237... [more]
P149727.9e-8264.76Replication-associated protein OS=African cassava mosaic virus (isolate Nigerian... [more]
P149821.0e-8165.20Replication-associated protein OS=African cassava mosaic virus (isolate West Ken... [more]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D4HS997.0e-8973.61Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep ... [more]
D4HSB12.6e-8871.30Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 GN=Rep ... [more]
A0A088BDT27.7e-8866.12Replication-associated protein OS=Sweet potato leaf curl virus OX=100755 PE=3 SV... [more]
A0A1L7B8361.3e-8766.53Replication-associated protein OS=Sweet potato mosaic virus OX=1513528 PE=3 SV=1[more]
I7D0Y31.3e-8766.53Replication-associated protein OS=Sweet potato mosaic virus-[ZA:WP:2011] OX=1560... [more]
BLAST of Lag0022668 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001301Geminivirus AL1 replication-associated protein, CLV typePRINTSPR00228GEMCOATCLVL1coord: 271..290
score: 80.35
coord: 394..416
score: 74.22
coord: 227..243
score: 26.42
coord: 243..262
score: 68.86
coord: 426..446
score: 75.61
IPR001191Geminivirus AL1, replication-associated proteinPRINTSPR00227GEMCOATAL1coord: 232..249
score: 48.45
coord: 271..290
score: 75.63
coord: 323..342
score: 45.89
IPR000657Geminivirus AL3 coat proteinPFAMPF01407Gemini_AL3coord: 4..92
e-value: 4.0E-25
score: 88.0
NoneNo IPR availableGENE3D3.40.1310.20coord: 221..305
e-value: 3.3E-25
score: 90.4
NoneNo IPR availablePIRSRPIRSR601191-2PIRSR601191-2coord: 233..447
e-value: 7.4E-78
score: 259.8
NoneNo IPR availableSUPERFAMILY55464Origin of replication-binding domain, RBD-likecoord: 226..305
IPR022690Geminivirus AL1 replication-associated protein, catalytic domainPFAMPF00799Gemini_AL1coord: 233..303
e-value: 3.4E-29
score: 101.5
IPR022692Geminivirus AL1 replication-associated protein, central domainPFAMPF08283Gemini_AL1_Mcoord: 310..414
e-value: 1.0E-29
score: 102.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022668.1Lag0022668.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0006260 DNA replication
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0016032 viral process
cellular_component GO:0042025 host cell nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
molecular_function GO:0004386 helicase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0005198 structural molecule activity