Lag0022645 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022645
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr7: 34897295 .. 34897696 (+)
RNA-Seq ExpressionLag0022645
SyntenyLag0022645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCAACAAAACTGGATTCATGGAGTAGAGGATTCTGACGGAAACTGGCAATCAGAGCTGGAGACTACTCGTGCATCTTTTGTGAATTATTTCACAAATATATTCTCTTCGGTTCAGCCTGATCAGGGGGCCTTGGATTTGGTGATTGATCATATTCCCAAGAAAGTCACTAAGGAGATGAATCAGAGGCTTATGGCTCCGTATACACGGGAAGAGGTTTTTGCAACAGTTAAAGGTTTTCATCCAACCAAGGCTCCGAGTCCGAACGGTTTTCCAACTGTTTTTTATAAAAAATATTGGGAGATTGTTGGCCAAGCTACGGTGTCGATCTGTTTGGCCATATTGAATTTGGATGCGTCGGTGCATGAATGGAATCATACATCCAACTATGAATGA

mRNA sequence

ATGAGGCATCAACAAAACTGGATTCATGGAGTAGAGGATTCTGACGGAAACTGGCAATCAGAGCTGGAGACTACTCGTGCATCTTTTGTGAATTATTTCACAAATATATTCTCTTCGGTTCAGCCTGATCAGGGGGCCTTGGATTTGGTGATTGATCATATTCCCAAGAAAGTCACTAAGGAGATGAATCAGAGGCTTATGGCTCCGTATACACGGGAAGAGGTTTTTGCAACAGTTAAAGGTTTTCATCCAACCAAGGCTCCGAGTCCGAACGGTTTTCCAACTGTTTTTTATAAAAAATATTGGGAGATTGTTGGCCAAGCTACGGTGTCGATCTGTTTGGCCATATTGAATTTGGATGCGTCGGTGCATGAATGGAATCATACATCCAACTATGAATGA

Coding sequence (CDS)

ATGAGGCATCAACAAAACTGGATTCATGGAGTAGAGGATTCTGACGGAAACTGGCAATCAGAGCTGGAGACTACTCGTGCATCTTTTGTGAATTATTTCACAAATATATTCTCTTCGGTTCAGCCTGATCAGGGGGCCTTGGATTTGGTGATTGATCATATTCCCAAGAAAGTCACTAAGGAGATGAATCAGAGGCTTATGGCTCCGTATACACGGGAAGAGGTTTTTGCAACAGTTAAAGGTTTTCATCCAACCAAGGCTCCGAGTCCGAACGGTTTTCCAACTGTTTTTTATAAAAAATATTGGGAGATTGTTGGCCAAGCTACGGTGTCGATCTGTTTGGCCATATTGAATTTGGATGCGTCGGTGCATGAATGGAATCATACATCCAACTATGAATGA

Protein sequence

MRHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKEMNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILNLDASVHEWNHTSNYE
Homology
BLAST of Lag0022645 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-22
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 2   RHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKE 61
           R ++NWI G+ D +  W  + E     F  Y+ N+F+S  P Q  L+L + ++P KV+ E
Sbjct: 228 RKRKNWISGIVDENNRWSEKAEDIERMFCEYYHNLFTSTNPSQQHLELALRNMPHKVSAE 287

Query: 62  MNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILNLDA 121
           MN  L  P+T  ++   +   HPTKAP P+G PT F++K+W  V +  ++ CL ILN   
Sbjct: 288 MNSHLDQPFTEADILEALSQMHPTKAPGPDGLPTAFFQKHWASVSEGVIATCLHILNEGG 347

Query: 122 SVHEWNHT 130
           ++   NHT
Sbjct: 348 NIAPLNHT 355

BLAST of Lag0022645 vs. NCBI nr
Match: XP_024038343.1 (uncharacterized protein LOC112097373 [Citrus clementina])

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-21
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 2   RHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKE 61
           R ++N I G+E++ GNW    E     F  YFTN+F++ +P+Q  +   +  I ++V+ E
Sbjct: 330 RKKKNRIWGIENAAGNWIENAEGVEFEFNKYFTNLFTTSKPNQDQIAAALSGISRRVSTE 389

Query: 62  MNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILNLDA 121
           MN+ L  P+T EEV   +    PTKAP P+G P VF++K+W+ V Q  +S CL ILN   
Sbjct: 390 MNESLEMPFTPEEVVEALTQMCPTKAPGPDGLPAVFFQKHWQRVKQGVLSTCLHILNKQG 449

Query: 122 SVHEWNHT 130
            V  +NHT
Sbjct: 450 DVAPFNHT 457

BLAST of Lag0022645 vs. NCBI nr
Match: XP_010666352.1 (PREDICTED: uncharacterized protein LOC104883509 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 0

Query: 2   RHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKE 61
           R ++N+IHG++D DG WQ+E E      V YF  IF+S +P +  L  V+ H+   VT+E
Sbjct: 340 RKKRNYIHGLKDRDGVWQTEEENIEREVVRYFDTIFTSSEPSRDNLQEVLKHVRSSVTQE 399

Query: 62  MNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILN 119
            N  L+ PYT+EE++A +   HP KAP P+G   +FY+++W I+G    +    IL+
Sbjct: 400 YNDILLRPYTKEEIYAALSDMHPCKAPGPDGMHAIFYQRFWHIIGDEVFTYISNILH 456

BLAST of Lag0022645 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-20
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 0

Query: 2   RHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKE 61
           R ++N I+G+ D +GNWQ   E      V+YF  I+SS  P +  +  V+D IP  VT+E
Sbjct: 202 RRRRNTINGIMDENGNWQDSTEGIAKVAVSYFQTIYSSSVPTR--ISEVLDAIPTTVTEE 261

Query: 62  MNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILNLDA 121
           MN  L+  +TREE+   +   HPTKAP P+G   +F++KYW IVG   V + L +LN + 
Sbjct: 262 MNHSLIQEFTREEIETALNQMHPTKAPGPDGMSAIFFQKYWNIVGNDIVCMVLDVLNSNM 321

Query: 122 SVHEWNHTS 131
           S+ E N T+
Sbjct: 322 SMVEINKTN 328

BLAST of Lag0022645 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 108.2 bits (269), Expect = 5.4e-20
Identity = 53/129 (41.09%), Postives = 77/129 (59.69%), Query Frame = 0

Query: 2   RHQQNWIHGVEDSDGNWQSELETTRASFVNYFTNIFSSVQPDQGALDLVIDHIPKKVTKE 61
           R +QN I G+ D  G W    E+   + ++YF NI+SS  P Q  ++ V + IP KVT+E
Sbjct: 326 RRKQNTIVGIWDEQGRWCDNEESIAQAAISYFNNIYSSSHPSQ--IEEVTEAIPFKVTEE 385

Query: 62  MNQRLMAPYTREEVFATVKGFHPTKAPSPNGFPTVFYKKYWEIVGQATVSICLAILNLDA 121
           MN+ L+  +T+EEV   +K  HP KAP P+G   VF++KYW IVG     + L +LN + 
Sbjct: 386 MNESLIREFTKEEVAVALKQIHPNKAPGPDGMSAVFFQKYWSIVGNNVTDMVLNVLNHNL 445

Query: 122 SVHEWNHTS 131
            + E N T+
Sbjct: 446 PIPELNKTN 452

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_015388020.12.6e-2237.50uncharacterized protein LOC107177951 [Citrus sinensis][more]
XP_024038343.16.4e-2140.63uncharacterized protein LOC112097373 [Citrus clementina][more]
XP_010666352.11.4e-2040.17PREDICTED: uncharacterized protein LOC104883509 [Beta vulgaris subsp. vulgaris][more]
XP_023881891.13.2e-2041.86uncharacterized protein LOC111994244 [Quercus suber][more]
XP_023878301.15.4e-2041.09uncharacterized protein LOC111990748 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 1..129
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022645.1Lag0022645.1mRNA