Lag0022612 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022612
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Patatin
Location	chr7: 34381816 .. 34382130 (+)
RNA-Seq Expression	Lag0022612
Synteny	Lag0022612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTGGCAGACGATGGCTCTGGTTGTCTTCTATTCTTCACTAGGGATGTTGTGCATGCGATTTCGGTTAGAAATTTCGAGATGTTTAGAGTAAAATATGGCGGTGGATTTTGTCGACGGTAGAGATTTTCTGGTAGGTGTATGGATGAAGTGTTGAAGGAGTTGTTTAGAGGCGAGAATGGTAAGGATTTGACTCTGAAGGATACTTGTAGGCCACTTTTGGTTCCGTGTTTTGATCTCAAGAGTTTATCCCCATTCGTCTTCTCTCGCGCCTATGCTTCTGAATCGACGAGTTTCAACTTCGAGCTCTAG

mRNA sequence

ATGATTGTGGCAGACGATGGCTCTGGTTGTCTTCTATTCTTCACTAGGGATGTTGTGCATGCGATTTCGGAGTTGTTTAGAGGCGAGAATGGTAAGGATTTGACTCTGAAGGATACTTGTAGGCCACTTTTGGTTCCGTGTTTTGATCTCAAGAGTTTATCCCCATTCGTCTTCTCTCGCGCCTATGCTTCTGAATCGACGAGTTTCAACTTCGAGCTCTAG

Coding sequence (CDS)

ATGATTGTGGCAGACGATGGCTCTGGTTGTCTTCTATTCTTCACTAGGGATGTTGTGCATGCGATTTCGGAGTTGTTTAGAGGCGAGAATGGTAAGGATTTGACTCTGAAGGATACTTGTAGGCCACTTTTGGTTCCGTGTTTTGATCTCAAGAGTTTATCCCCATTCGTCTTCTCTCGCGCCTATGCTTCTGAATCGACGAGTTTCAACTTCGAGCTCTAG

Protein sequence

MIVADDGSGCLLFFTRDVVHAISELFRGENGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL

Homology

[Close]

BLAST of Lag0022612 vs. NCBI nr
Match: XP_022959606.1 (probable inactive patatin-like protein 9 [Cucurbita moschata] >KAG6593124.1 putative inactive patatin-like protein 9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025528.1 putative inactive patatin-like protein 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAIS-------------------------------ELFRGE 60
           MIVADDGSG  LF  RD V AIS                               ELFRGE
Sbjct: 85  MIVADDGSGRPLFSARDAVSAISLRNSEMFKVKLGSGFCGRRRFSGRSIDGVLKELFRGE 144

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           NGKDLTLKDTCRPLLVPCFDLKS +PFVFSRA ASES SFNF+L
Sbjct: 145 NGKDLTLKDTCRPLLVPCFDLKSSAPFVFSRADASESASFNFDL 188

[Close]

BLAST of Lag0022612 vs. NCBI nr
Match: XP_023514666.1 (probable inactive patatin-like protein 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAIS-------------------------------ELFRGE 60
           MIVADDGSG  LF  RD V AIS                               ELFRGE
Sbjct: 85  MIVADDGSGRPLFSARDAVSAISLRNSEMFKVKLGSGFCGRRRFSGRSIDGVLKELFRGE 144

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           NGKDLTLKDTCRPLLVPCFDLKS +PFVFSRA ASES SFNF+L
Sbjct: 145 NGKDLTLKDTCRPLLVPCFDLKSSAPFVFSRADASESASFNFDL 188

[Close]

BLAST of Lag0022612 vs. NCBI nr
Match: XP_023004139.1 (probable inactive patatin-like protein 9 [Cucurbita maxima])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAIS-------------------------------ELFRGE 60
           MIVADDGSG  LF  RD V AIS                               ELFRGE
Sbjct: 85  MIVADDGSGRPLFSARDAVSAISLRNSEMFKVKLGSGFCGRRRFSGRSIDGVLKELFRGE 144

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           NGKDLTLKDTCRPLLVPCFDLKS +PFVFSRA ASES SFNF+L
Sbjct: 145 NGKDLTLKDTCRPLLVPCFDLKSSAPFVFSRADASESASFNFDL 188

[Close]

BLAST of Lag0022612 vs. NCBI nr
Match: XP_038897114.1 (probable inactive patatin-like protein 9 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 59/104 (56.73%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAIS-------------------------------ELFRGE 60
           MIVADDGSG  LF  RD V+AIS                               E FRGE
Sbjct: 85  MIVADDGSGRPLFSARDAVNAISSRNSEMFRVKFGSGICRRRRFSGRSMDGVLKEFFRGE 144

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           NGKDL+LKDTC+PLL+PCFDLKS +PFVFSRA ASES SFNFEL
Sbjct: 145 NGKDLSLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFEL 188

[Close]

BLAST of Lag0022612 vs. NCBI nr
Match: KAG6575906.1 (putative inactive patatin-like protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-19
Identity = 58/104 (55.77%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAIS-------------------------------ELFRGE 60
           M+VADDGSG  LF  RD V AIS                               E FRGE
Sbjct: 85  MLVADDGSGRPLFSARDAVSAISARNSEMFKVKFGSGFCRRRRFSGRSMDRVLKEFFRGE 144

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           NGKDL+LKDTC+PLLVPCFDL+S +PFVFSRA ASES SFNFEL
Sbjct: 145 NGKDLSLKDTCKPLLVPCFDLRSSAPFVFSRADASESPSFNFEL 188

[Close]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot
Match: Q93ZQ3 (Probable inactive patatin-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=PLP9 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-17
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 1   MIVADDGSGCLLFFTRDVVHAISE-------------------------------LFRGE 60
           ++VADDGSG  +F  RD V  ++E                                FR E
Sbjct: 86  LLVADDGSGRPMFTARDAVKFVAEKNSELFEIRYTGVFRRNKRYSGKSMERVLETAFRRE 145

Query: 61  NGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           +GK LT+KDTC+PLLVPC+DLK+ +PFVFSRA ASES SF+FEL
Sbjct: 146 DGKVLTMKDTCKPLLVPCYDLKTSAPFVFSRAGASESPSFDFEL 189

[Close]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot
Match: Q9SV43 (Patatin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=PLP7 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-08
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 29  ENGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           E+  +LTLKDT +P+L+PC+DLKS  PF+FSRA A E+  ++F L
Sbjct: 212 ESFSELTLKDTLKPVLIPCYDLKSSGPFLFSRADALETDGYDFRL 256

[Close]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot
Match: Q8H133 (Patatin-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=PLP8 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-08
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 33  DLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           DLTLKDT +P+L+ C+DL S +PF+FSRA A ES SF+F L
Sbjct: 253 DLTLKDTLKPILISCYDLSSTAPFLFSRADALESDSFDFRL 293

[Close]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot
Match: O80959 (Patatin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=PLP6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-07
Identity = 24/45 (53.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 29  ENGKDLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           E+ ++LTLKDT +P+L+PC+DL S +PF+FSRA A E+  ++F+L
Sbjct: 225 ESFEELTLKDTLKPVLIPCYDLTSSAPFLFSRADALETDGYDFKL 269

[Close]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot
Match: B8B7E7 (Patatin-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=PLP3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-07
Identity = 23/41 (56.10%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 33  DLTLKDTCRPLLVPCFDLKSLSPFVFSRAYASESTSFNFEL 74
           +LTL+DT RP+LVPC+DL + +PF+FSRA A++S +++F L
Sbjct: 160 ELTLRDTVRPVLVPCYDLATRAPFLFSRADAAQSPAYDFRL 200

The following BLAST results are available for this feature:

BLAST of Lag0022612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959606.1	1.3e-20	59.62	probable inactive patatin-like protein 9 [Cucurbita moschata] >KAG6593124.1 puta...	[more]
XP_023514666.1	1.3e-20	59.62	probable inactive patatin-like protein 9 [Cucurbita pepo subsp. pepo]	[more]
XP_023004139.1	1.3e-20	59.62	probable inactive patatin-like protein 9 [Cucurbita maxima]	[more]
XP_038897114.1	1.1e-19	56.73	probable inactive patatin-like protein 9 [Benincasa hispida]	[more]
KAG6575906.1	5.6e-19	55.77	putative inactive patatin-like protein 9, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0022612 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZQ3	9.3e-17	46.15	Probable inactive patatin-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=PLP9...	[more]
Q9SV43	4.6e-08	55.56	Patatin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=PLP7 PE=2 SV=1	[more]
Q8H133	6.1e-08	63.41	Patatin-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=PLP8 PE=1 SV=1	[more]
O80959	1.0e-07	53.33	Patatin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=PLP6 PE=1 SV=1	[more]
B8B7E7	3.9e-07	56.10	Patatin-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=PLP3 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32241	PATATIN-LIKE PROTEIN 6	coord: 18..73
None	No IPR available	PANTHER	PTHR32241:SF13	INACTIVE PATATIN-LIKE PROTEIN 9-RELATED	coord: 18..73
IPR002641	Patatin-like phospholipase domain	PROSITE	PS51635	PNPLA	coord: 1..73 score: 10.943086

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022612.1	Lag0022612.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
molecular_function	GO:0016787	hydrolase activity