Lag0022608 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022608
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 34322499 .. 34322816 (+)
RNA-Seq ExpressionLag0022608
SyntenyLag0022608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTATACAACCAATCAATGGCAGAAAGATTGGGCAACGCCATTGGCCATTTTCAGGAGTATGACAACGGAGGGCGCGAATATGGATGGAAGGAAAGTCTTCGAGTCCGTATTATTATTGACATTTCACGTTCTTTTCGAAGAGGCATCAAGGTATGCCTTGATGAGCCATTCGGGAGCATTTGGACCCTCATCAAATACGAAAAATTGCGGAGATATGTTCGTATTGTGGAATCAACCATGTTACAAAAGATTGTAATTTTTCTTTCAATGATGATGGGTCTGCTCGGCGCCACAAATATGGGATGTGGATGA

mRNA sequence

ATGGACCTATACAACCAATCAATGGCAGAAAGATTGGGCAACGCCATTGGCCATTTTCAGGAGTATGACAACGGAGGGCGCGAATATGGATGGAAGGAAAGTCTTCGAGTCCGTATTATTATTGACATTTCACGTTCTTTTCGAAGAGGCATCAAGGTATGCCTTGATGAGCCATTCGGGAGCATTTGGACCCTCATCAAATACGAAAAATTGCGGAGATATGTTCGTATTGTGGAATCAACCATGTTACAAAAGATTGTAATTTTTCTTTCAATGATGATGGGTCTGCTCGGCGCCACAAATATGGGATGTGGATGA

Coding sequence (CDS)

ATGGACCTATACAACCAATCAATGGCAGAAAGATTGGGCAACGCCATTGGCCATTTTCAGGAGTATGACAACGGAGGGCGCGAATATGGATGGAAGGAAAGTCTTCGAGTCCGTATTATTATTGACATTTCACGTTCTTTTCGAAGAGGCATCAAGGTATGCCTTGATGAGCCATTCGGGAGCATTTGGACCCTCATCAAATACGAAAAATTGCGGAGATATGTTCGTATTGTGGAATCAACCATGTTACAAAAGATTGTAATTTTTCTTTCAATGATGATGGGTCTGCTCGGCGCCACAAATATGGGATGTGGATGA

Protein sequence

MDLYNQSMAERLGNAIGHFQEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFGSIWTLIKYEKLRRYVRIVESTMLQKIVIFLSMMMGLLGATNMGCG
Homology
BLAST of Lag0022608 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1   MDLYNQSMAERLGNAIGHFQEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFG 60
           M   N++MA RLGNAIG+F + D   + + W  SLR+R++IDI++  RRGIK+ +D P G
Sbjct: 137 MSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMG 196

Query: 61  SIWTLIKYEKL 72
             W  I+YE+L
Sbjct: 197 GCWIPIQYERL 207

BLAST of Lag0022608 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-09
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 6   QSMAERLGNAIGHFQEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFGSIWTL 65
           + MA RLGNA+G F+E D       W  +LRVR+++DIS+  RRGIK+ LD P G  W  
Sbjct: 143 RDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIP 202

Query: 66  IKYEKL 72
           I+YE+L
Sbjct: 203 IQYERL 208

BLAST of Lag0022608 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 5   NQSMAERLGNAIGHFQEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFGSIWT 64
           N++MA RLGNAIG F++ ++    + W   LRVR+  D+ +   RGIK+ LD P G  W 
Sbjct: 142 NKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWI 201

Query: 65  LIKYEKL 72
            I+YE+L
Sbjct: 202 PIQYERL 208

BLAST of Lag0022608 vs. NCBI nr
Match: XP_021738182.1 (uncharacterized protein LOC110704671 [Chenopodium quinoa])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 5   NQSMAERLGNAIGHFQEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFGSIWT 64
           N++ A  +G A+G F E+D    + GW E +R+++++DI++  RRGIKV    P  S W 
Sbjct: 112 NEAFAREVGEAVGGFLEFDEEDPQ-GWDEFMRIKVMVDITKPLRRGIKVATC-PSMSKWV 171

Query: 65  LIKYEKL 72
             KYE+L
Sbjct: 172 GFKYERL 176

BLAST of Lag0022608 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 3   LYNQSMAERLGNAIGHF--QEYDNGGREYGWKESLRVRIIIDISRSFRRGIKVCLDEPFG 62
           L N+ + + +GNA+G F   +Y++GG    W  ++R+R+ ID+ +  RRG+K+ L     
Sbjct: 137 LMNKQVGQIVGNAVGQFIDMDYEDGG--IAWGRTMRIRVAIDVRKPLRRGMKLALSSA-D 196

Query: 63  SIWTLIKYEKLRRY 75
            IW   KYE+L  Y
Sbjct: 197 PIWVDFKYERLPIY 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.18.1e-1147.89uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022158377.19.9e-0950.00uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022132681.12.2e-0844.78uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_021738182.11.9e-0440.30uncharacterized protein LOC110704671 [Chenopodium quinoa][more]
XP_028124075.12.5e-0436.49uncharacterized protein LOC114321128 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022608.1Lag0022608.1mRNA