Lag0022488 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022488
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr7: 30416576 .. 30416944 (+)
RNA-Seq ExpressionLag0022488
SyntenyLag0022488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAAGACTGGGCAATGCAATCAAACAGTTCCAGGAATATGACATTGGAAGTCGAGGATACGGTTGGAAGGAAAGTCTTCGGGTTCGTGTTACCTTTGACATTACGCGTCCTCTGTGCCGCAACATTAAGGTCCGTCTTGACGAGCCTTTAGGAAGTGTTTGGACTCCGATTAAGTATGAAAAGCTCCCTGAAAATTGCGCTTATTGTGGACGTATTGGACATGTGACCAAGGATTACAATTCTTACTATAGTGACGGTGGTTCTTTTTCTAGACGACCACAGTATGGAGTGTGGATGGCTTTTAATGGTCGTTCTTCGAGCATTTTTCGTTCGCCAAGTACCAGTCTGATAGGCAATACCTAG

mRNA sequence

ATGGCGGAAAGACTGGGCAATGCAATCAAACAGTTCCAGGAATATGACATTGGAAGTCGAGGATACGGTTGGAAGGAAAGTCTTCGGGTTCGTGTTACCTTTGACATTACGCGTCCTCTGTGCCGCAACATTAAGGTCCGTCTTGACGAGCCTTTAGGAAGTGTTTGGACTCCGATTAAGTATGAAAAGCTCCCTGAAAATTGCGCTTATTGTGGACGTATTGGACATGTGACCAAGGATTACAATTCTTACTATAGTGACGGTGGTTCTTTTTCTAGACGACCACAGTATGGAGTGTGGATGGCTTTTAATGGTCGTTCTTCGAGCATTTTTCGTTCGCCAAGTACCAGTCTGATAGGCAATACCTAG

Coding sequence (CDS)

ATGGCGGAAAGACTGGGCAATGCAATCAAACAGTTCCAGGAATATGACATTGGAAGTCGAGGATACGGTTGGAAGGAAAGTCTTCGGGTTCGTGTTACCTTTGACATTACGCGTCCTCTGTGCCGCAACATTAAGGTCCGTCTTGACGAGCCTTTAGGAAGTGTTTGGACTCCGATTAAGTATGAAAAGCTCCCTGAAAATTGCGCTTATTGTGGACGTATTGGACATGTGACCAAGGATTACAATTCTTACTATAGTGACGGTGGTTCTTTTTCTAGACGACCACAGTATGGAGTGTGGATGGCTTTTAATGGTCGTTCTTCGAGCATTTTTCGTTCGCCAAGTACCAGTCTGATAGGCAATACCTAG

Protein sequence

MAERLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIKYEKLPENCAYCGRIGHVTKDYNSYYSDGGSFSRRPQYGVWMAFNGRSSSIFRSPSTSLIGNT
Homology
BLAST of Lag0022488 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 1   MAERLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIK 60
           MA RLGNAI  F + D   +G+ W  SLR+RV  DIT+PL R IK+ +D P+G  W PI+
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 61  YEKLPENCAYCGRIGHVTKDYNSYYSDGGSFSR-RPQYGVWMAFNG 106
           YE+LP+ C +CG IGH + D ++ Y      SR   +YG W+ F G
Sbjct: 204 YERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVG 249

BLAST of Lag0022488 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 1   MAERLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIK 60
           MA RLGNAI  F++ +  +  + W   LRVRV FD+ +PL R IK+ LD P+G  W PI+
Sbjct: 145 MATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQ 204

Query: 61  YEKLPENCAYCGRIGHVTKDYNSYYSDGGSFSRRPQYGVWMAFNGRSSS 110
           YE+LP+   +CGR+ H+ KD +    D  S S+  QYG W+ F G  +S
Sbjct: 205 YERLPDFRYHCGRLDHILKDCSDCCVD--SVSKNLQYGPWLRFQGHKNS 251

BLAST of Lag0022488 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-14
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 1   MAERLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIK 60
           MA RLGNA+  F+E D       W  +LRVRV  DI++PL R IK+ LD P+G  W PI+
Sbjct: 145 MAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQ 204

Query: 61  YEKLPENCAYCGRIGHVTKDYNSYYSDGGSFSRRPQYGVWMAFNG 106
           YE+LP+ C +CG                 S  ++ QYG W+ + G
Sbjct: 205 YERLPDFCYHCGL---------------SSSRKKHQYGSWLRYQG 234

BLAST of Lag0022488 vs. NCBI nr
Match: XP_042964753.1 (uncharacterized protein LOC122298977 [Carya illinoinensis])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 4   RLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIKYEK 63
           RLG++I + QE D+     GW  SLRV++  D+ +PL R     L+     VW+P++YEK
Sbjct: 144 RLGSSIGEVQEVDVDDDNVGWGSSLRVKILIDMKKPLARGRTCHLNGV--KVWSPVQYEK 203

Query: 64  LPENCAYCGRIGHVTKDYNSYYSDGGSFSRRPQYGVWM 102
           LP  C  CGRI H   D  S      +    PQYG W+
Sbjct: 204 LPRFCFTCGRIIHENVDCQS------NTDSSPQYGAWL 233

BLAST of Lag0022488 vs. NCBI nr
Match: XP_035546596.1 (uncharacterized protein LOC118348645 [Juglans regia])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 0

Query: 2   AERLGNAIKQFQEYDIGSRGYGWKESLRVRVTFDITRPLCRNIKVRLDEPLGSVWTPIKY 61
           +E+LG +  +    D+  +G  W E LRV+V  D+++PL R   + + +     W P KY
Sbjct: 143 SEKLGTSAGKVIMVDVDEKGRAWGEVLRVKVMIDLSKPLTRGCVINVGD--ARSWIPFKY 202

Query: 62  EKLPENCAYCGRIGHVTKDYNSYYSDGGSFSRRP-QYGVWM-AFNGRSSSIFRSPSTSLI 121
           EKLP  C YCG + H     + ++SDG + ++ P QYG W+ A   ++ + +++ S S  
Sbjct: 203 EKLPSFCYYCGIVLHTHHRCSRHFSDGSTHTKSPLQYGPWLRADPPQNPNHYKTHSNSPE 262

Query: 122 GNT 123
           G T
Sbjct: 263 GKT 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.9e-2047.17uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.12.5e-1944.95uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.14.1e-1440.95uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_042964753.12.5e-1139.80uncharacterized protein LOC122298977 [Carya illinoinensis][more]
XP_035546596.14.2e-1133.33uncharacterized protein LOC118348645 [Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 34..81
e-value: 2.4E-10
score: 39.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022488.1Lag0022488.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding