Lag0022160 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022160
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr7: 19876081 .. 19876797 (+)
RNA-Seq Expression	Lag0022160
Synteny	Lag0022160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACACAAGGAATGCAAGCAACACCAACAACCAACATTACCAGATTTCAACAAAGCCAGAAAACAAATTGCTATCAGTATCGAAGAAAGCCCTAAGATTCAAGACAAGACCCAAAGCCAGCCAAAGTTAGAGAGCCTTTCGAGTCACTTACAATGGGAGCCTCCGGAGCCCGACTACTGGAAGCTTAATGTTGATGCCTCTTGGTCCGAAAGAGAGGAGAGCGGCGGTCTTGGCTGGGCAATTCGTGACTCTAACGGATCTTTAATCGGAGCGGGCTGCAAGAAGATTTCGAATATGTGGAACATTAAATGCCTTGAAGAAGAAGCGATTATTGAAGGTTTAAAAGCTTACGAGGACAACGGTGATTTCGAAGGAAGCAGATGTAAGCCACCGCTGGTAGTTGAGTCTGACTCTGTCGAAGTTGTGGAAGCTATGAATCGAGCCTCTGAAGACGCCACCGAGCTCTGCTTGTTCGTGGATGAAATCGACAGATTCAGAGGTCCGGACCAAGCGAAATTCTTCTCCAAATGCTCCAGACAGAGCAATTCTCTGGCGCACGAGCTTGAGCGAGCAGCGTCGAGAAACAGCGACTGTAATTTTTTTGTAAATCTCTCTCTCCTCTATGGAGAAGATGATCAGTTTTGGAGGGAAGTTCCTTTTCTTGGGTGGTTCACTTCTGTTATTAATGCCCTAGTGGGTGCAACTGTTCTTTAG

mRNA sequence

ATGGAACACAAGGAATGCAAGCAACACCAACAACCAACATTACCAGATTTCAACAAAGCCAGAAAACAAATTGCTATCAGTATCGAAGAAAGCCCTAAGATTCAAGACAAGACCCAAAGCCAGCCAAAGTTAGAGAGCCTTTCGAGTCACTTACAATGGGAGCCTCCGGAGCCCGACTACTGGAAGCTTAATGTTGATGCCTCTTGGTCCGAAAGAGAGGAGAGCGGCGGTCTTGGCTGGGCAATTCGTGACTCTAACGGATCTTTAATCGGAGCGGGCTGCAAGAAGATTTCGAATATGTGGAACATTAAATGCCTTGAAGAAGAAGCGATTATTGAAGGTTTAAAAGCTTACGAGGACAACGGTGATTTCGAAGGAAGCAGATGTAAGCCACCGCTGGTAGTTGAGTCTGACTCTGTCGAAGTTGTGGAAGCTATGAATCGAGCCTCTGAAGACGCCACCGAGCTCTGCTTGTTCGTGGATGAAATCGACAGATTCAGAGGTCCGGACCAAGCGAAATTCTTCTCCAAATGCTCCAGACAGAGCAATTCTCTGGCGCACGAGCTTGAGCGAGCAGCGTCGAGAAACAGCGACTGTAATTTTTTTGTAAATCTCTCTCTCCTCTATGGAGAAGATGATCAGTTTTGGAGGGAAGTTCCTTTTCTTGGGTGGTTCACTTCTGTTATTAATGCCCTAGTGGGTGCAACTGTTCTTTAG

Coding sequence (CDS)

ATGGAACACAAGGAATGCAAGCAACACCAACAACCAACATTACCAGATTTCAACAAAGCCAGAAAACAAATTGCTATCAGTATCGAAGAAAGCCCTAAGATTCAAGACAAGACCCAAAGCCAGCCAAAGTTAGAGAGCCTTTCGAGTCACTTACAATGGGAGCCTCCGGAGCCCGACTACTGGAAGCTTAATGTTGATGCCTCTTGGTCCGAAAGAGAGGAGAGCGGCGGTCTTGGCTGGGCAATTCGTGACTCTAACGGATCTTTAATCGGAGCGGGCTGCAAGAAGATTTCGAATATGTGGAACATTAAATGCCTTGAAGAAGAAGCGATTATTGAAGGTTTAAAAGCTTACGAGGACAACGGTGATTTCGAAGGAAGCAGATGTAAGCCACCGCTGGTAGTTGAGTCTGACTCTGTCGAAGTTGTGGAAGCTATGAATCGAGCCTCTGAAGACGCCACCGAGCTCTGCTTGTTCGTGGATGAAATCGACAGATTCAGAGGTCCGGACCAAGCGAAATTCTTCTCCAAATGCTCCAGACAGAGCAATTCTCTGGCGCACGAGCTTGAGCGAGCAGCGTCGAGAAACAGCGACTGTAATTTTTTTGTAAATCTCTCTCTCCTCTATGGAGAAGATGATCAGTTTTGGAGGGAAGTTCCTTTTCTTGGGTGGTTCACTTCTGTTATTAATGCCCTAGTGGGTGCAACTGTTCTTTAG

Protein sequence

MEHKECKQHQQPTLPDFNKARKQIAISIEESPKIQDKTQSQPKLESLSSHLQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAIIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFRGPDQAKFFSKCSRQSNSLAHELERAASRNSDCNFFVNLSLLYGEDDQFWREVPFLGWFTSVINALVGATVL

Homology

[Close]

BLAST of Lag0022160 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-19
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 17  FNKARKQIAISIEESPKIQDKTQSQPKLESLSSHLQWEPPEPDYWKLNVDASWSEREESG 76
           F+   +Q+   + ES   Q +T      ++L++ L+WEPP    W LN DASWS+    G
Sbjct: 36  FSTMIQQLTKFVTES-SYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRG 95

Query: 77  GLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAIIEGLKAYEDNGDFEGSRCKPPLVVE 136
           G+GW IR  +G ++ AG + +    N+K LE  AI+EGL+   + G         PL +E
Sbjct: 96  GIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR------PLHIE 155

Query: 137 SDSVEVVEAMNRASEDATELCLFVDEIDRFRGPDQAKFFSKCSRQSNSLAHELERAAS 195
           +DS EV   +NR  ED T+    V+EI   R   +   F+K  R++N  AH L + AS
Sbjct: 156 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lag0022160 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 52  QWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAI 111
           +W+PP  + WKLN DA+W     +GG+GW +RD  G +I A C+ I    NI  LE  AI
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 112 IEGLKA--YEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFRGP 171
            EGL+A   E     +   C+ P+ +ESDS+E +  ++R  +D TE+   ++EI +    
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 197

Query: 172 DQAKFFSKCSRQSNSLAHELERAASRN 197
            +       SR++N +AH+L R A  N
Sbjct: 198 MKIVSMRHISREANKVAHDLARRAMEN 223

[Close]

BLAST of Lag0022160 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-16
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 52  QWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAI 111
           QW+PP  + WKLN +A+W     +GG+GW +RD  G +I A C+ I    NI  LE  AI
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 112 IEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFRGPDQ 171
            EGL+A           C+ P+ +ESDS+E +  ++R  +D TE+   ++EI +     +
Sbjct: 138 CEGLRAIRQ------EHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDME 197

Query: 172 AKFFSKCSRQSNSLAHELERAASRN 197
                  SR++N +AH L R A  N
Sbjct: 198 IVSMRHISREANKVAHGLARRAMEN 215

[Close]

BLAST of Lag0022160 vs. NCBI nr
Match: XP_037439691.1 (uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 56/174 (32.18%), Postives = 83/174 (47.70%), Query Frame = 0


Query: 43  KLESLSSHLQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWN 102
           K +  +  ++W  P     KLNVDAS+   E +G  G  +RDS+G+ I A C       +
Sbjct: 290 KAKEPTKQIRWVRPAKGVIKLNVDASYHVDEGAGATGAVLRDSSGAFIAASCSFRQYAMD 349

Query: 103 IKCLEEEAIIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDE 162
           +  +E  A++EGL+  E  G +        LVVESDS E+V+AM   SE      +  D+
Sbjct: 350 VPSMEALALLEGLRLAEHLGIY-------ALVVESDSQEIVQAMTDPSEYRASAAVVTDD 409

Query: 163 IDRFRGPDQAKFFSKCSRQSNSLAHELERAASR---NSDCNFFVNLSLLYGEDD 214
             +            C+R+SN +AH L R + R   N   +  V   LL G+ D
Sbjct: 410 CRQVLSSFSRATTVHCARESNGVAHWLARTSYRRQLNEAGDMNVTKMLLMGDVD 456

[Close]

BLAST of Lag0022160 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 51  LQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEA 110
           ++W  P  + WKLN DASWSE  E GG+GW + D  G ++ AG  KI     I  LE   
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 111 IIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDAT 155
           II GL+       F   + + P+ +ESDSVEV+  M +   D T
Sbjct: 163 IIRGLQ-------FINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Lag0022160 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 17  FNKARKQIAISIEESPKIQDKTQSQPKLESLSSHLQWEPPEPDYWKLNVDASWSEREESG 76
           F+   +Q+   + ES   Q +T      ++L++ L+WEPP    W LN DASWS+    G
Sbjct: 36  FSTMIQQLTKFVTES-SYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRG 95

Query: 77  GLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAIIEGLKAYEDNGDFEGSRCKPPLVVE 136
           G+GW IR  +G ++ AG + +    N+K LE  AI+EGL+   + G         PL +E
Sbjct: 96  GIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR------PLHIE 155

Query: 137 SDSVEVVEAMNRASEDATELCLFVDEIDRFRGPDQAKFFSKCSRQSNSLAHELERAAS 195
           +DS EV   +NR  ED T+    V+EI   R   +   F+K  R++N  AH L + AS
Sbjct: 156 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lag0022160 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-18
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 52  QWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAI 111
           +W+PP  + WKLN DA+W     +GG+GW +RD  G +I A C+ I    NI  LE  AI
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 112 IEGLKA--YEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFRGP 171
            EGL+A   E     +   C+ P+ +ESDS+E +  ++R  +D TE+   ++EI +    
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 197

Query: 172 DQAKFFSKCSRQSNSLAHELERAASRN 197
            +       SR++N +AH+L R A  N
Sbjct: 198 MKIVSMRHISREANKVAHDLARRAMEN 223

[Close]

BLAST of Lag0022160 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-17
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 52  QWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAI 111
           QW+PP  + WKLN +A+W     +GG+GW +RD  G +I A C+ I    NI  LE  AI
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 112 IEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFRGPDQ 171
            EGL+A           C+ P+ +ESDS+E +  ++R  +D TE+   ++EI +     +
Sbjct: 138 CEGLRAIRQ------EHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDME 197

Query: 172 AKFFSKCSRQSNSLAHELERAASRN 197
                  SR++N +AH L R A  N
Sbjct: 198 IVSMRHISREANKVAHGLARRAMEN 215

[Close]

BLAST of Lag0022160 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 51  LQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEA 110
           ++W  P  + WKLN DASWSE  E GG+GW + D  G ++ AG  KI     I  LE   
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 111 IIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDAT 155
           II GL+       F   + + P+ +ESDSVEV+  M +   D T
Sbjct: 163 IIRGLQ-------FINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Lag0022160 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 48  SSHLQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLE 107
           ++  +W+PP  + WKLN DA+W     + G+GW +RD  G +I  GC+ I    NI  LE
Sbjct: 250 NTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLE 309

Query: 108 EEAIIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNR 149
             AI EGL+A           C+ P+ +ESDS+E +  ++R
Sbjct: 310 VMAICEGLRAIRQ------EHCR-PIHLESDSLEAIHLLHR 343

[Close]

BLAST of Lag0022160 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-07
Identity = 41/150 (27.33%), Postives = 65/150 (43.33%), Query Frame = 0


Query: 48  SSHLQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLE 107
           S + +W PP  D  K N DAS  ER    GLGW +R+S G++I  G  K       +  E
Sbjct: 100 SRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE 159

Query: 108 EEAIIEGLKAYEDNGDFEGSRCKPPLVVESDSVEVVEAMNRASEDATELCLFVDEIDRFR 167
              +I  ++A    G          ++ E D+  +   +N  S +   L  F+D I  + 
Sbjct: 160 CSTLIWAIQASYGFG-------HKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWI 219

Query: 168 GPDQAKFFSKCSRQSNSLAHELERAASRNS 198
              ++  FS   R+ N  A  L + A + +
Sbjct: 220 PSFESIEFSFKHREQNGCADFLAKQAIKEN 241

[Close]

BLAST of Lag0022160 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-05
Identity = 26/79 (32.91%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 52  QWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNMWNIKCLEEEAI 111
           +W+ P  ++ K N D S     +  GL W IR+S G+ +  GC K      IK  E  A+
Sbjct: 29  KWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTAL 88

Query: 112 IEGLKAYEDNG----DFEG 127
           I  ++   D G    +FEG
Sbjct: 89  IWAIQCAWDLGYRRVEFEG 107

[Close]

BLAST of Lag0022160 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-05
Identity = 23/71 (32.39%), Postives = 35/71 (49.30%), Query Frame = 0


Query: 41  QPKLESLSSHLQWEPPEPDYWKLNVDASWSEREESGGLGWAIRDSNGSLIGAGCKKISNM 100
           QP         +W PP   Y K N D+ + +  +     W IRDSNG +I +GC K+   
Sbjct: 50  QPNDRPSGRSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQS 109

Query: 101 WNIKCLEEEAI 112
           ++   L+ EA+
Sbjct: 110 YS--ALQAEAL 118

The following BLAST results are available for this feature:

BLAST of Lag0022160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.7e-19	35.96	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	1.6e-17	36.73	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	1.0e-16	36.55	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_037439691.1	2.2e-11	32.18	uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides]	[more]
XP_022143317.1	2.2e-11	40.38	uncharacterized protein LOC111013216 [Momordica charantia]	[more]

BLAST of Lag0022160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.8e-19	35.96	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	7.5e-18	36.73	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	4.9e-17	36.55	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQG0	1.1e-11	40.38	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	1.5e-10	37.62	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lag0022160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	4.5e-07	27.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G23320.1	5.5e-05	32.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G09775.1	5.5e-05	32.39	BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 59..195 e-value: 4.4E-9 score: 38.5
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 64..189 e-value: 8.8E-14 score: 51.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 51..200
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 51..200
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 60..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022160.1	Lag0022160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity