Lag0022141 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022141
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr7: 19621081 .. 19622204 (-)
RNA-Seq Expression	Lag0022141
Synteny	Lag0022141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAATTCACATCCATACTTTTCGAGGCCAAGACATCATTTTCTCGAGAGATAGGCGTCAAGACGCTGAAAAGGGCGTCAAAATGCTCCAAGAAGTCAAACATTCTGACTTGGACCCGAGGCCTCAGCGTCTCGATGCTGCCCATAGCATCTCAATCGTTGGGTAGTGTTGAACGTAGTGTACTCGATGTTGCGGAAGGCTATCTCCATGACTTTTTCGCTCGAAGTGTCGAGACAACCGACCAATACCTACTGCAAAATAGTCTAGTACTGGTGAACTATAAATTAAAATTTGATAAGACCTTCAACAAGTCTTTTGTCAAGCATCCACGCAGTTAAATCCAAAAAGATCTTTAGCTCATAAGTATGATGAAAAATGAATAGACTTCATTGAAATAAATGTCATAATTGTTGGAGAGAAGTCTGTCAAAGATCAGCCCAATATAAAAGTTGAAGAATCACAGTGTGAAGACCGGCCCAGTAGTCACAAAGTTGGACAAGAAAACCAGCCCATTAATGTCAAAACTAGTCTCAGAAAATTCCAGAACGGTGCCACCAACAGATAATATTTGTCTGCTATCCATTATCCTATATGAGAATGACATCTGTCCATTTGTATTGTTTATTATCTGTATTTCTTCATTTATTTGATATTCTTTGTGGCATCTCTGAAGTGTATAAATTGAGCCCTTGGTGCTCATTGGAAAATAAGAAAGAAGAAGAAAGCAACTGAGTATTATCTCCCAATTACCTCTGTGCAAAATCTTAAGTTGGTATCAGAGTCAATGACCAACGTCGCCACCGTCAGAATGACCACCAGAACCACAAATTTCAGCAATCCTCTATTGAATCAGTTATTAAACCAAATCACCTCAATCAAGCTCGAAAGGGGAAATTTCCTACTCTTGAAAAGTCTGGCTCTCCCAATACTCCGCAGCTACAAATTGGAAGGGCATTTGTCTGGAGAAAAACCATGCCCTCCTCAGTATATTTCAGCAACTACGAATGGAACTAACACTAGTTCAAGGGCAGGGGCAGGAGCTTCAAGCTCTGAGACAGTAACAAGTGGAGGGTCAAGTACTGCTCCAACGACGACAATTAATCCTCAATATGAGGCATAG

mRNA sequence

ATGAGTGAATTCACATCCATACTTTTCGAGGCCAAGACATCATTTTCTCGAGAGATAGGCGTCAAGACGCTGAAAAGGGCGTCAAAATGCTCCAAGAAGTCAAACATTCTGACTTGGACCCGAGGCCTCAGCGTCTCGATGCTGCCCATAGCATCTCAATCGTTGGGTAGTGTTGAACGTAGTGTACTCGATGTTGCGGAAGGCTATCTCCATGACTTTTTCGCTCGAAGTGTCGAGACAACCGACCAATACCTACTGCAAAATAAGTCAATGACCAACGTCGCCACCGTCAGAATGACCACCAGAACCACAAATTTCAGCAATCCTCTATTGAATCAGTTATTAAACCAAATCACCTCAATCAAGCTCGAAAGGGGAAATTTCCTACTCTTGAAAAGTCTGGCTCTCCCAATACTCCGCAGCTACAAATTGGAAGGGCATTTGTCTGGAGAAAAACCATGCCCTCCTCAGTATATTTCAGCAACTACGAATGGAACTAACACTAGTTCAAGGGCAGGGGCAGGAGCTTCAAGCTCTGAGACAGTAACAAGTGGAGGGTCAAGTACTGCTCCAACGACGACAATTAATCCTCAATATGAGGCATAG

Coding sequence (CDS)

ATGAGTGAATTCACATCCATACTTTTCGAGGCCAAGACATCATTTTCTCGAGAGATAGGCGTCAAGACGCTGAAAAGGGCGTCAAAATGCTCCAAGAAGTCAAACATTCTGACTTGGACCCGAGGCCTCAGCGTCTCGATGCTGCCCATAGCATCTCAATCGTTGGGTAGTGTTGAACGTAGTGTACTCGATGTTGCGGAAGGCTATCTCCATGACTTTTTCGCTCGAAGTGTCGAGACAACCGACCAATACCTACTGCAAAATAAGTCAATGACCAACGTCGCCACCGTCAGAATGACCACCAGAACCACAAATTTCAGCAATCCTCTATTGAATCAGTTATTAAACCAAATCACCTCAATCAAGCTCGAAAGGGGAAATTTCCTACTCTTGAAAAGTCTGGCTCTCCCAATACTCCGCAGCTACAAATTGGAAGGGCATTTGTCTGGAGAAAAACCATGCCCTCCTCAGTATATTTCAGCAACTACGAATGGAACTAACACTAGTTCAAGGGCAGGGGCAGGAGCTTCAAGCTCTGAGACAGTAACAAGTGGAGGGTCAAGTACTGCTCCAACGACGACAATTAATCCTCAATATGAGGCATAG

Protein sequence

MSEFTSILFEAKTSFSREIGVKTLKRASKCSKKSNILTWTRGLSVSMLPIASQSLGSVERSVLDVAEGYLHDFFARSVETTDQYLLQNKSMTNVATVRMTTRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSGEKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSSTAPTTTINPQYEA

Homology

[Close]

BLAST of Lag0022141 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 90  SMTNVATVRMT-TRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHL 149
           SMTN A + +T T TT+F+NPLLNQ+LNQ+T+IKL+RGN+LL K+LALPIL+SYKL  HL
Sbjct: 75  SMTNAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 134

Query: 150 SGEKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSSTAPTTTINPQYE 201
            GE PC P+ I  TT   N S    AG  S ET     SS+    T+NP+YE
Sbjct: 135 FGESPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYE 181

[Close]

BLAST of Lag0022141 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-17
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 91  MTNVATVRMT-TRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLS 150
           MTN A + +T T TT+F+NPLLNQ+LNQ+T+IKL+RGN+LL K+LALPIL+SYKL  HL 
Sbjct: 1   MTNAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLF 60

Query: 151 GEKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSSTAPTTTINPQYE 201
           GE PC P+ I  TT   N S    AG  S ET     SS+    T+NP+YE
Sbjct: 61  GESPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYE 106

[Close]

BLAST of Lag0022141 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 103 TTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSGEKPCPPQYISAT 162
           TTNFSNP LNQLLNQ++S+KL+RGN+LL K+LALPI++SYK EGHL+GE PCPP++I   
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI--- 71

Query: 163 TNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
              TN    + +    +   T G SS +  T T+NP+++
Sbjct: 72  ---TNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0022141 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 103 TTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSGEKPCPPQYISAT 162
           TTNFSNP LNQLLNQ++S+KL+RGN+LL K+LALPI++SYK EGHL+GE PCPP++I   
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI--- 71

Query: 163 TNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
              TN    + +    +   T G SS +  T T+NP+++
Sbjct: 72  ---TNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0022141 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 91  MTNVATVRMTTRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSG 150
           M N  ++ + + TTNFSNP LNQLLNQ++S+KL+R N+LL K+LALPI++SYK EG+L+G
Sbjct: 1   MANAVSL-VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTG 60

Query: 151 EKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
           E PCPP++I      TN ++ + +    +   T G SS +  T T+NP+++
Sbjct: 61  ENPCPPKFI------TNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFD 104

[Close]

BLAST of Lag0022141 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-18
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 90  SMTNVATVRMT-TRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHL 149
           SMTN A + +T T TT+F+NPLLNQ+LNQ+T+IKL+RGN+LL K+LALPIL+SYKL  HL
Sbjct: 75  SMTNAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 134

Query: 150 SGEKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSSTAPTTTINPQYE 201
            GE PC P+ I  TT   N S    AG  S ET     SS+    T+NP+YE
Sbjct: 135 FGESPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYE 181

[Close]

BLAST of Lag0022141 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 91  MTNVATVRMT-TRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLS 150
           MTN A + +T T TT+F+NPLLNQ+LNQ+T+IKL+RGN+LL K+LALPIL+SYKL  HL 
Sbjct: 1   MTNAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLF 60

Query: 151 GEKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSSTAPTTTINPQYE 201
           GE PC P+ I  TT   N S    AG  S ET     SS+    T+NP+YE
Sbjct: 61  GESPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYE 106

[Close]

BLAST of Lag0022141 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 103 TTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSGEKPCPPQYISAT 162
           TTNFSNP LNQLLNQ++S+KL+RGN+LL K+LALPI++SYK EGHL+GE PCPP++I   
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI--- 71

Query: 163 TNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
              TN    + +    +   T G SS +  T T+NP+++
Sbjct: 72  ---TNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0022141 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 103 TTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSGEKPCPPQYISAT 162
           TTNFSNP LNQLLNQ++S+KL+RGN+LL K+LALPI++SYK EGHL+GE PCPP++I   
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI--- 71

Query: 163 TNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
              TN    + +    +   T G SS +  T T+NP+++
Sbjct: 72  ---TNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0022141 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 91  MTNVATVRMTTRTTNFSNPLLNQLLNQITSIKLERGNFLLLKSLALPILRSYKLEGHLSG 150
           M N  ++ + + TTNFSNP LNQLLNQ++S+KL+R N+LL K+LALPI++SYK EG+L+G
Sbjct: 1   MANAVSL-VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTG 60

Query: 151 EKPCPPQYISATTNGTNTSSRAGAGASSSETVTSGGSS-TAPTTTINPQYE 201
           E PCPP++I      TN ++ + +    +   T G SS +  T T+NP+++
Sbjct: 61  ENPCPPKFI------TNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFD 104

The following BLAST results are available for this feature:

BLAST of Lag0022141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900937.1	1.3e-17	56.25	PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]	[more]
KAA0067279.1	3.8e-17	55.86	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]
KAA0060627.1	1.2e-15	52.53	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	1.2e-15	52.53	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016901223.1	5.2e-14	46.85	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]

BLAST of Lag0022141 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY80	6.4e-18	56.25	uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=...	[more]
A0A5A7VPY0	1.9e-17	55.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BVJ1	6.0e-16	52.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	6.0e-16	52.53	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DZ26	2.5e-14	46.85	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]

BLAST of Lag0022141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022141.1	Lag0022141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity