Lag0022128 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022128
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 19061435 .. 19062027 (-)
RNA-Seq Expression	Lag0022128
Synteny	Lag0022128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCAGGAAAAGGATGCAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACAAATATTAGGGGATCTGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAGCTGGTATGTGGTGGCTACTTTCAATCCTTGTGGGCCGGAAATATGAGTTTGGCTGATGTGAAGTAGCTGGAACTTGAGTTATATTGCAACAATATGTATTATTTTCAAGTTTTTGTTTGGCTGCAAATATTTTCTACTGATCCACATTAAATTTTTGTTGATGAAGGTCTCTGAACTCCTGGAGTCGGGAAAGACTGTTTTCAAAGATCTTAGTAATGAGTTTGAAGAGCGAATCATAGCGTGAGTTGAAATTTGAATATATAGCGTCAAACATTTATGTTGAGAACTATTTTCTTAATTTCTTTTCTTCCTTTCTTCCCAGCATTCATAAGGATCATGTTGAAAAGTGGCAACATGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAACGAGTACTATTTTAAGCAATGCTCGAAATTTACTTCAGAATGGTCATATCCAGTTTTGA

mRNA sequence

ATGGAAGAGCAGGAAAAGGATGCAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACAAATATTAGGGGATCTGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAGCTGGTCTCTGAACTCCTGGAGTCGGGAAAGACTGTTTTCAAAGATCTTAGTAATGAGTTTGAAGAGCGAATCATAGCCATTCATAAGGATCATGTTGAAAAGTGGCAACATGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAACGAGTACTATTTTAAGCAATGCTCGAAATTTACTTCAGAATGGTCATATCCAGTTTTGA

Coding sequence (CDS)

ATGGAAGAGCAGGAAAAGGATGCAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACAAATATTAGGGGATCTGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAGCTGGTCTCTGAACTCCTGGAGTCGGGAAAGACTGTTTTCAAAGATCTTAGTAATGAGTTTGAAGAGCGAATCATAGCCATTCATAAGGATCATGTTGAAAAGTGGCAACATGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAACGAGTACTATTTTAAGCAATGCTCGAAATTTACTTCAGAATGGTCATATCCAGTTTTGA

Protein sequence

MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKDLSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF

Homology

[Close]

BLAST of Lag0022128 vs. NCBI nr
Match: XP_022152377.1 (uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152378.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152379.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152380.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152381.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152382.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152383.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152384.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152385.1 uncharacterized protein LOC111020126 isoform X1 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKD 60
           MEEQEKD  MSNI ENEQCET+IRGSEEMESNI RLLEKIESFTQLVSELLESGKTVFKD
Sbjct: 17  MEEQEKDTGMSNIIENEQCETSIRGSEEMESNITRLLEKIESFTQLVSELLESGKTVFKD 76

Query: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF 116
           LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEE +TIL NARNLLQNGH +F
Sbjct: 77  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEEANTILCNARNLLQNGHTEF 131

[Close]

BLAST of Lag0022128 vs. NCBI nr
Match: XP_022152386.1 (uncharacterized protein LOC111020126 isoform X2 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKD 60
           MEEQEKD  MSNI ENEQCET+IRGSEEMESNI RLLEKIESFTQLVSELLESGKTVFKD
Sbjct: 1   MEEQEKDTGMSNIIENEQCETSIRGSEEMESNITRLLEKIESFTQLVSELLESGKTVFKD 60

Query: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF 116
           LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEE +TIL NARNLLQNGH +F
Sbjct: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEEANTILCNARNLLQNGHTEF 115

[Close]

BLAST of Lag0022128 vs. NCBI nr
Match: XP_022932727.1 (uncharacterized protein LOC111439190 isoform X1 [Cucurbita moschata] >XP_022932728.1 uncharacterized protein LOC111439190 isoform X1 [Cucurbita moschata] >XP_022932729.1 uncharacterized protein LOC111439190 isoform X1 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKD 60
           MEEQ KD SMSNISENEQCET+IRGSEEMESNIARLLEKIESFTQLVSELLESGKT FKD
Sbjct: 17  MEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSELLESGKTAFKD 76

Query: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF 116
           LSNEFEE+IIAIHK++VE+WQHEIKELRLLDSSNEE STIL NARNLLQNGHIQF
Sbjct: 77  LSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQNGHIQF 131

[Close]

BLAST of Lag0022128 vs. NCBI nr
Match: XP_022932730.1 (uncharacterized protein LOC111439190 isoform X2 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKD 60
           MEEQ KD SMSNISENEQCET+IRGSEEMESNIARLLEKIESFTQLVSELLESGKT FKD
Sbjct: 1   MEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSELLESGKTAFKD 60

Query: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF 116
           LSNEFEE+IIAIHK++VE+WQHEIKELRLLDSSNEE STIL NARNLLQNGHIQF
Sbjct: 61  LSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQNGHIQF 115

[Close]

BLAST of Lag0022128 vs. NCBI nr
Match: XP_023540394.1 (uncharacterized protein LOC111800780 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MEEQEKDASMSNISENEQCETNIRGSEEMESNIARLLEKIESFTQLVSELLESGKTVFKD 60
           MEEQ KD S+SNISENEQCET+IRGSEEMESNIARLLEKIESFTQLVSELLESGKT FKD
Sbjct: 1   MEEQGKDTSISNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSELLESGKTAFKD 60

Query: 61  LSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEETSTILSNARNLLQNGHIQF 116
           LSNEFEE+IIAIHK++VE+WQHEIKELRLLDSSNEE ST+L NARNLLQNGHIQF
Sbjct: 61  LSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARNLLQNGHIQF 115

The following BLAST results are available for this feature:

BLAST of Lag0022128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152377.1	2.6e-47	91.30	uncharacterized protein LOC111020126 isoform X1 [Momordica charantia] >XP_022152...	[more]
XP_022152386.1	2.6e-47	91.30	uncharacterized protein LOC111020126 isoform X2 [Momordica charantia]	[more]
XP_022932727.1	1.0e-46	91.30	uncharacterized protein LOC111439190 isoform X1 [Cucurbita moschata] >XP_0229327...	[more]
XP_022932730.1	1.0e-46	91.30	uncharacterized protein LOC111439190 isoform X2 [Cucurbita moschata]	[more]
XP_023540394.1	3.8e-46	89.57	uncharacterized protein LOC111800780 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0022128 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..27
None	No IPR available	PANTHER	PTHR35500	OS03G0108700 PROTEIN	coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022128.1	Lag0022128.1	mRNA