Lag0022127 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022127
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr7: 19024628 .. 19025208 (+)
RNA-Seq Expression	Lag0022127
Synteny	Lag0022127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTTGATATTTCACTGGGGGCGAGCTTGAGGATTCGAATTCGGGTGGATATTTCATGGTCGTTGCAACGTGGAGTGAAGATTACCCTGGATGATGCTATTGGAGGGAGCTGGATTCCTATACAATACGAGAAATTGCCGAAGTTCTGCTTCTACTGTGGTATTATTGGACATTTGCATAAAGACTGTGGTCAGTTTTACTCTTTTGACAGAACACATAGTGCAGTGTTAAATATGGAGATTGGCTTCGGTTTGATCCAAAGGGGGTCGTGTTAGCTAGCCTTCCGGTGAAGGATTTAGGATTGGTTTCAAGCGTTTCCCTGGGAGTCAGTCGAGCACCAGTGGTTATGCGGAGGTTTGATTCTCTAGTTTCGAGTCTTTCTCCTAGATTTTCTATCTCTGATTCAACTGAACTTGGGTCTGGCTGTCATCCGATGTTGGCAAGGGGATCCAATGTTTCTGATCAGAGTGCTGCGTGGTATTCGCTCTCCGGAGGCCCTCATCCCTTCGACAAAGGGAAAGCCAAGCTGACTGACCCTTTCTCTAGACCAGCCATGGCTGGTTGGGTGGCGTTGTAA

mRNA sequence

ATGTATGTTGATATTTCACTGGGGGCGAGCTTGAGGATTCGAATTCGGGTGGATATTTCATGGTCGTTGCAACGTGGAGTGAAGATTACCCTGGATGATGCTATTGGAGGGAGCTGGATTCCTATACAATACGAGAAATTGCCGAAGTTCTGCTTCTACTGTGGTATTATTGGACATTTGCATAAAGACTGTGCTAGCCTTCCGGTGAAGGATTTAGGATTGGTTTCAAGCGTTTCCCTGGGAGTCAGTCGAGCACCAGTGGTTATGCGGAGGTTTGATTCTCTAGTTTCGAGTCTTTCTCCTAGATTTTCTATCTCTGATTCAACTGAACTTGGGTCTGGCTGTCATCCGATGTTGGCAAGGGGATCCAATGTTTCTGATCAGAGTGCTGCGTGGTATTCGCTCTCCGGAGGCCCTCATCCCTTCGACAAAGGGAAAGCCAAGCTGACTGACCCTTTCTCTAGACCAGCCATGGCTGGTTGGGTGGCGTTGTAA

Coding sequence (CDS)

ATGTATGTTGATATTTCACTGGGGGCGAGCTTGAGGATTCGAATTCGGGTGGATATTTCATGGTCGTTGCAACGTGGAGTGAAGATTACCCTGGATGATGCTATTGGAGGGAGCTGGATTCCTATACAATACGAGAAATTGCCGAAGTTCTGCTTCTACTGTGGTATTATTGGACATTTGCATAAAGACTGTGCTAGCCTTCCGGTGAAGGATTTAGGATTGGTTTCAAGCGTTTCCCTGGGAGTCAGTCGAGCACCAGTGGTTATGCGGAGGTTTGATTCTCTAGTTTCGAGTCTTTCTCCTAGATTTTCTATCTCTGATTCAACTGAACTTGGGTCTGGCTGTCATCCGATGTTGGCAAGGGGATCCAATGTTTCTGATCAGAGTGCTGCGTGGTATTCGCTCTCCGGAGGCCCTCATCCCTTCGACAAAGGGAAAGCCAAGCTGACTGACCCTTTCTCTAGACCAGCCATGGCTGGTTGGGTGGCGTTGTAA

Protein sequence

MYVDISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAPVVMRRFDSLVSSLSPRFSISDSTELGSGCHPMLARGSNVSDQSAAWYSLSGGPHPFDKGKAKLTDPFSRPAMAGWVAL

Homology

[Close]

BLAST of Lag0022127 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-14
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 6   SLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC 65
           S GASLRIR+ +DI+  L+RG+KI +D  +GG WIPIQYE+LP FC++CG+IGH   DC
Sbjct: 166 SWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDC 224

[Close]

BLAST of Lag0022127 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 8   GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASL 67
           G+ LR+R+R D+   L RG+K+ LD  +GG WIPIQYE+LP F ++CG + H+ KDC+  
Sbjct: 169 GSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDC 228

Query: 68  PVKDLGLVSSVSLGVSRAP 87
                  V SVS  +   P
Sbjct: 229 ------CVDSVSKNLQYGP 241

[Close]

BLAST of Lag0022127 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-10
Identity = 29/49 (59.18%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 8   GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGI 57
           G++LR+R+ +DIS  L+RG+K+ LD  IGG+WIPIQYE+LP FC++CG+
Sbjct: 169 GSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCGL 217

[Close]

BLAST of Lag0022127 vs. NCBI nr
Match: TVU42476.1 (hypothetical protein EJB05_08883, partial [Eragrostis curvula])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 4   DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKD 63
           + S G  LRI++++DI   + RGV + +D+   G W P++YE LP+FC  CGIIGH+ K+
Sbjct: 169 EASNGPFLRIKVQLDIRVPILRGVMLEVDEKRHGRWCPLEYEFLPEFCHLCGIIGHIDKN 228

Query: 64  C 65
           C
Sbjct: 229 C 229

[Close]

BLAST of Lag0022127 vs. NCBI nr
Match: XP_035546596.1 (uncharacterized protein LOC118348645 [Juglans regia])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 8   GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCA 66
           G  LR+++ +D+S  L RG  I + DA   SWIP +YEKLP FC+YCGI+ H H  C+
Sbjct: 166 GEVLRVKVMIDLSKPLTRGCVINVGDA--RSWIPFKYEKLPSFCYYCGIVLHTHHRCS 221

The following BLAST results are available for this feature:

BLAST of Lag0022127 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	3.2e-14	61.02	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	9.7e-11	44.30	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	2.8e-10	59.18	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
TVU42476.1	3.5e-08	45.90	hypothetical protein EJB05_08883, partial [Eragrostis curvula]	[more]
XP_035546596.1	4.5e-08	50.00	uncharacterized protein LOC118348645 [Juglans regia]	[more]

BLAST of Lag0022127 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 17..65 e-value: 4.2E-11 score: 42.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 51..64 score: 9.158235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022127.1	Lag0022127.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0008270	zinc ion binding