Lag0022116 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022116
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr7: 18733482 .. 18734518 (+)
RNA-Seq Expression	Lag0022116
Synteny	Lag0022116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCATGTTATGAAGAGCTGAAGAACAGAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAAACTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAGGATAACGGCGTTTGGAAAACAGTGGTGCGAGGACAGATTGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAGCGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAATATTGTGCTATAGAGGGCGCGAGTTGGAAGCAAAGTAAAAATAGCAACTGTTCCTTGTTGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGTTTGTGAGGAACCGTCTTCTGGCCACCACGCACGACACCACGGTCTCAAAAGAGAGAATGCTATTGGTTTTTTCTATCATGAGTCTAATCAACATAGATGGGGTAGAATAATTGCAAAAGAAATCACCTCATGTGCCCGGAAGAAAGCGGGAAAGCTATTCTTCCCTAACCTCATTACAGCTTTATGCTTAAGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTTGACAAGAGAATTATAGATGCGGCGTCTATCAAGCGATTAATGGGCGATGGTAAATCAAGGAAAACGTCAACTGTAGCCAGCGGAATAGAAGAAATCCTTAGACAACAAAGAGAATTGCTGCAACATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTATTAACTCTGATCAGGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATAGCGTTTTAAGCCCTTGGTGTCCTCCCTCCGAAGAAGATGTAGAAGAAGATGAAGAGGAAGATTGA

mRNA sequence

ATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCATGTTATGAAGAGCTGAAGAACAGAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAAACTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAGGATAACGGCGTTTGGAAAACAGTGGTGCGAGGACAGATTGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAGCGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAATATTGTGCTATAGAGGGCGCGAGTTGGAAGCAAAGTAAAAATAGCAACTGTTCCTTGTTGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTTGACAAGAGAATTATAGATGCGGCGTCTATCAAGCGATTAATGGGCGATGGTAAATCAAGGAAAACGTCAACTGTAGCCAGCGGAATAGAAGAAATCCTTAGACAACAAAGAGAATTGCTGCAACATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTATTAACTCTGATCAGGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATAGCGTTTTAAGCCCTTGGTGTCCTCCCTCCGAAGAAGATGTAGAAGAAGATGAAGAGGAAGATTGA

Coding sequence (CDS)

ATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCATGTTATGAAGAGCTGAAGAACAGAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAAACTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAGGATAACGGCGTTTGGAAAACAGTGGTGCGAGGACAGATTGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAGCGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAATATTGTGCTATAGAGGGCGCGAGTTGGAAGCAAAGTAAAAATAGCAACTGTTCCTTGTTGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTTGACAAGAGAATTATAGATGCGGCGTCTATCAAGCGATTAATGGGCGATGGTAAATCAAGGAAAACGTCAACTGTAGCCAGCGGAATAGAAGAAATCCTTAGACAACAAAGAGAATTGCTGCAACATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTATTAACTCTGATCAGGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATAGCGTTTTAAGCCCTTGGTGTCCTCCCTCCGAAGAAGATGTAGAAGAAGATGAAGAGGAAGATTGA

Protein sequence

MEAMSEVPRKFVGEVAAACYEELKNREIMLEKGFDENLDSLPHMLAVTIRNQNWQNLCHHPEPAVPSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQLKATLQYCAIEGASWKQSKNSNCSLLSAYVTPEANVWLWAGVQLEEGDDLAVDKRIIDAASIKRLMGDGKSRKTSTVASGIEEILRQQRELLQHVQHQGEQQRVYWEYAWKRDEMVEKAINSDQEEALPPFPPFPHSVLSPWCPPSEEDVEEDEEED

Homology

[Close]

BLAST of Lag0022116 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-13
Identity = 53/156 (33.97%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 10  KFVGEVAAACYE-ELKNREIMLEKGF----DENLDSLPHMLAVTIRNQNWQNLCHHPEPA 69
           KF  E AA  YE  ++NR +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 70  VPSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQL 129
           +  +V+EFYAN  D       VRG  V WS   IN  + + D P    +  +   +++ L
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDL 143

Query: 130 KATLQYCAIEGASWKQSKNSNCSLLSAYVTPEANVW 161
              L+  A  GA W  S     + + + +TP A VW
Sbjct: 144 ITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW 177

[Close]

BLAST of Lag0022116 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-13
Identity = 53/156 (33.97%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 10  KFVGEVAAACYE-ELKNREIMLEKGF----DENLDSLPHMLAVTIRNQNWQNLCHHPEPA 69
           KF  E A   YE  ++NR +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 70  VPSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQL 129
           +  +V+EFYAN  D       VRG  V WS   IN  + + D P    +  +   +E  L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 130 KATLQYCAIEGASWKQSKNSNCSLLSAYVTPEANVW 161
              L+  A+ GA W  S     + + + +TP A VW
Sbjct: 135 ITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVW 168

[Close]

BLAST of Lag0022116 vs. NCBI nr
Match: PIN01433.1 (hypothetical protein CDL12_26059 [Handroanthus impetiginosus])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-10
Identity = 48/155 (30.97%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 10  KFVGEVAAACYEE-LKNREIMLEKGFDENLDSLPHMLAVTIRNQNWQNLCHHPEPAVPSI 69
           +FV + A   Y   L  +  + E+GF+   ++    +  T+R + W+     PE  V  +
Sbjct: 20  RFVSKSAEERYHSGLVGKVAIAERGFETKGEAYYEHIYHTVRERKWKTFIASPESGVLPL 79

Query: 70  VKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPF-AICNAMMIAPSEEQLKAT 129
           V+EFYAN  ++   K +VRG+ V +   TIN+ Y+IP     A  N        E+L  T
Sbjct: 80  VREFYANAAEHKNLKCLVRGREVPFDSVTINELYNIPPIELDAFENFCENGIDYEELTRT 139

Query: 130 LQYCAIEGASWKQSKNSNCSLLSAYVTPEANVWLW 163
           L      GA WK +K    S  S  +   A +WLW
Sbjct: 140 L---CPHGAQWKMTKGEYVSFKSNCLDKAAKIWLW 171

[Close]

BLAST of Lag0022116 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-10
Identity = 51/136 (37.50%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 10  KFVGEVAAACYEE-LKNREIMLEKGF-DENLDSL--PHMLAVTIRNQNWQNLCHHPEPAV 69
           KF  E A   YEE ++NR +  EKGF  +N   L  P  +A  I   NWQ  C HPE  +
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 70  PSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQLK 129
             +V+EFYAN  +       VRG  V  S   IN  Y + D P    +  + A +E +L 
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELA 134

Query: 130 ATLQYCAIEGASWKQS 142
             L+  AI GA W  S
Sbjct: 135 TVLETVAIAGAEWNVS 149

[Close]

BLAST of Lag0022116 vs. NCBI nr
Match: KAF4378427.1 (hypothetical protein F8388_021621 [Cannabis sativa])

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-09
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 8   PRKFVGEVAAACY-EELKNREIMLEKGF---DENLDSLPHMLAVTIRNQNWQNLCHHPEP 67
           PRKF+ + A A Y + ++++E  +E+G    D+N  S+P  L   I+ + W+ LC  P  
Sbjct: 618 PRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPAS 677

Query: 68  AVPSIVKEFYANFQDNGVWKT--VVRGQIVEWSPSTINQFYDIPDF--PFAICNAMM 117
           AV  +VKEFYANF  +  W    +VR   V +S   IN+F+ + +    F+ CN+ +
Sbjct: 678 AVCQVVKEFYANFLAS-EWPADIIVREVKVPFSDKLINEFFQLKNITCEFSKCNSKL 733

[Close]

BLAST of Lag0022116 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-13
Identity = 53/156 (33.97%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 10  KFVGEVAAACYE-ELKNREIMLEKGF----DENLDSLPHMLAVTIRNQNWQNLCHHPEPA 69
           KF  E AA  YE  ++NR +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 70  VPSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQL 129
           +  +V+EFYAN  D       VRG  V WS   IN  + + D P    +  +   +++ L
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDL 143

Query: 130 KATLQYCAIEGASWKQSKNSNCSLLSAYVTPEANVW 161
              L+  A  GA W  S     + + + +TP A VW
Sbjct: 144 ITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW 177

[Close]

BLAST of Lag0022116 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 53/156 (33.97%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 10  KFVGEVAAACYE-ELKNREIMLEKGF----DENLDSLPHMLAVTIRNQNWQNLCHHPEPA 69
           KF  E A   YE  ++NR +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 70  VPSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQL 129
           +  +V+EFYAN  D       VRG  V WS   IN  + + D P    +  +   +E  L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 130 KATLQYCAIEGASWKQSKNSNCSLLSAYVTPEANVW 161
              L+  A+ GA W  S     + + + +TP A VW
Sbjct: 135 ITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVW 168

[Close]

BLAST of Lag0022116 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-10
Identity = 51/136 (37.50%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 10  KFVGEVAAACYEE-LKNREIMLEKGF-DENLDSL--PHMLAVTIRNQNWQNLCHHPEPAV 69
           KF  E A   YEE ++NR +  EKGF  +N   L  P  +A  I   NWQ  C HPE  +
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 70  PSIVKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMIAPSEEQLK 129
             +V+EFYAN  +       VRG  V  S   IN  Y + D P    +  + A +E +L 
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELA 134

Query: 130 ATLQYCAIEGASWKQS 142
             L+  AI GA W  S
Sbjct: 135 TVLETVAIAGAEWNVS 149

[Close]

BLAST of Lag0022116 vs. ExPASy TrEMBL
Match: A0A2G9G807 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26059 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-10
Identity = 48/155 (30.97%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 10  KFVGEVAAACYEE-LKNREIMLEKGFDENLDSLPHMLAVTIRNQNWQNLCHHPEPAVPSI 69
           +FV + A   Y   L  +  + E+GF+   ++    +  T+R + W+     PE  V  +
Sbjct: 20  RFVSKSAEERYHSGLVGKVAIAERGFETKGEAYYEHIYHTVRERKWKTFIASPESGVLPL 79

Query: 70  VKEFYANFQDNGVWKTVVRGQIVEWSPSTINQFYDIPDFPF-AICNAMMIAPSEEQLKAT 129
           V+EFYAN  ++   K +VRG+ V +   TIN+ Y+IP     A  N        E+L  T
Sbjct: 80  VREFYANAAEHKNLKCLVRGREVPFDSVTINELYNIPPIELDAFENFCENGIDYEELTRT 139

Query: 130 LQYCAIEGASWKQSKNSNCSLLSAYVTPEANVWLW 163
           L      GA WK +K    S  S  +   A +WLW
Sbjct: 140 L---CPHGAQWKMTKGEYVSFKSNCLDKAAKIWLW 171

[Close]

BLAST of Lag0022116 vs. ExPASy TrEMBL
Match: A0A7J6G6G2 (Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-10
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 8   PRKFVGEVAAACY-EELKNREIMLEKGF---DENLDSLPHMLAVTIRNQNWQNLCHHPEP 67
           PRKF+ + A A Y + ++++E  +E+G    D+N  S+P  L   I+ + W+ LC  P  
Sbjct: 618 PRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPAS 677

Query: 68  AVPSIVKEFYANFQDNGVWKT--VVRGQIVEWSPSTINQFYDIPDF--PFAICNAMM 117
           AV  +VKEFYANF  +  W    +VR   V +S   IN+F+ + +    F+ CN+ +
Sbjct: 678 AVCQVVKEFYANFLAS-EWPADIIVREVKVPFSDKLINEFFQLKNITCEFSKCNSKL 733

The following BLAST results are available for this feature:

BLAST of Lag0022116 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	2.7e-13	33.97	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	3.6e-13	33.97	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PIN01433.1	4.8e-10	30.97	hypothetical protein CDL12_26059 [Handroanthus impetiginosus]	[more]
PON65868.1	4.8e-10	37.50	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]
KAF4378427.1	1.8e-09	35.04	hypothetical protein F8388_021621 [Cannabis sativa]	[more]

BLAST of Lag0022116 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	1.3e-13	33.97	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	1.7e-13	33.97	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5CXV1	2.3e-10	37.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]
A0A2G9G807	2.3e-10	30.97	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26059 P...	[more]
A0A7J6G6G2	8.9e-10	35.04	Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1	[more]

BLAST of Lag0022116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..280

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022116.1	Lag0022116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process