Lag0022115 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022115
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4283 domain-containing protein
Location	chr7: 18653495 .. 18654633 (-)
RNA-Seq Expression	Lag0022115
Synteny	Lag0022115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTTAAAAAGCTTACATTTGGGAAAAATTTTGCATGTCGTCGATCCTAAGCCAGAGATTCTTGTTGAGTCGGATGCAACCGAGGTGATTAATTTCTTAGTCGGGAAAGAAGAATATTTCACAGAGATCAAGAATTTGCTGGAGGAGATTCTCCAAATCTCTGTTTTGATCGATGAAGTGTCCTTTGCAAAGTGCACATGCTCGAGCAATGAACCAGCCCACCACCTAGCTCGTGCAACGATCTCTAGAAATGAATTATTTTGCCAAAATTCTTCCTCCATGGAGGAAGAAGAGTCGGGTTGTAGAATGGGTTTTTGGGAGGGAGAGGGAACTTTTCCCACGTGGGTCTCCTCTTTGATGGAGGAGGTCAGAGGACACTTTTTTTTTTTTTGAAAAAAGGTCAGAGGATACTTGTACCTAATGCTTTTCTTTTAATGAATTTTGCTATTCAAAAAAAAAAAAAGAAAAGTAACAAATCTGACAGACTAGCCATGGAATTTTGCTAGACGGTGCCCTCGGGAGAGATTTTCGGCCATTATGGTCGGATCATTATCGGATTTTACGTTTGCAATTCTTCCCTTGCCAGCCTCGCACTTGCAGATTGGATCGTTCATTCCCTCTTTAATTTTCAGGATTACGATGGCCATTTTCCGGGCTAATTTGGTTCTGCCGTTGCCAAATCTGACAGACTGACTATGGGATTGTTCAGCTTTACGGTTGCTATTTCAAGGGGTTTATGGACTTGTGTTTCATCATCGATTCCAGCTTCCAGTTGCAAGGATCTTCTGTCGTGTTTTTTTTCTGTTTACTTCTCTATTCCAGTTTTTCTGAACATGGATCCTTTAGCCCTTGTTGAGGACTGGTCTAAATTGAGCCTAACCTCTGCAGAAGAAGATGTGTCAGTTGATGTTGATCGCTCGGCTATTGATAGAACTAGCCAAATGTTGGGTTGCTGCCTCCTTGGTAAACTTTTGTCTCATCGTCATCTTACTCCAGAAGTTATGCGGAAAAATTATAAGGTGGCATGGAAGATAGATCATGGCTTGCAAGTTGAACTCTTAGGCAGAAATATCTTCCTATTTTGCTTTAATGAGGAAGATGATCGAGTTCGGGTGCTCAACCAAGGACCGTAG

mRNA sequence

ATGGAAGGTTTAAAAAGCTTACATTTGGGAAAAATTTTGCATGTCGTCGATCCTAAGCCAGAGATTCTTGTTGAGTCGGATGCAACCGAGGTGATTAATTTCTTAGTCGGGAAAGAAGAATATTTCACAGAGATCAAGAATTTGCTGGAGGAGATTCTCCAAATCTCTGTTTTGATCGATGAAGTGTCCTTTGCAAAGTGCACATGCTCGAGCAATGAACCAGCCCACCACCTAGCTCGTGCAACGATCTCTAGAAATGAATTATTTTGCCAAAATTCTTCCTCCATGGAGGAAGAAGAGTCGGGTTGTAGAATGGGTTTTTGGGAGGGAGAGGGAACTTTTCCCACACTGACTATGGGATTGTTCAGCTTTACGGTTGCTATTTCAAGGGGTTTATGGACTTGTGTTTCATCATCGATTCCAGCTTCCAGTTGCAAGGATCTTCTGTCGTGTTTTTTTTCTGTTTACTTCTCTATTCCAGTTTTTCTGAACATGGATCCTTTAGCCCTTGTTGAGGACTGGTCTAAATTGAGCCTAACCTCTGCAGAAGAAGATGTGTCAGTTGATGTTGATCGCTCGGCTATTGATAGAACTAGCCAAATGTTGGGTTGCTGCCTCCTTGGTAAACTTTTGTCTCATCGTCATCTTACTCCAGAAGTTATGCGGAAAAATTATAAGGTGGCATGGAAGATAGATCATGGCTTGCAAGTTGAACTCTTAGGCAGAAATATCTTCCTATTTTGCTTTAATGAGGAAGATGATCGAGTTCGGGTGCTCAACCAAGGACCGTAG

Coding sequence (CDS)

ATGGAAGGTTTAAAAAGCTTACATTTGGGAAAAATTTTGCATGTCGTCGATCCTAAGCCAGAGATTCTTGTTGAGTCGGATGCAACCGAGGTGATTAATTTCTTAGTCGGGAAAGAAGAATATTTCACAGAGATCAAGAATTTGCTGGAGGAGATTCTCCAAATCTCTGTTTTGATCGATGAAGTGTCCTTTGCAAAGTGCACATGCTCGAGCAATGAACCAGCCCACCACCTAGCTCGTGCAACGATCTCTAGAAATGAATTATTTTGCCAAAATTCTTCCTCCATGGAGGAAGAAGAGTCGGGTTGTAGAATGGGTTTTTGGGAGGGAGAGGGAACTTTTCCCACACTGACTATGGGATTGTTCAGCTTTACGGTTGCTATTTCAAGGGGTTTATGGACTTGTGTTTCATCATCGATTCCAGCTTCCAGTTGCAAGGATCTTCTGTCGTGTTTTTTTTCTGTTTACTTCTCTATTCCAGTTTTTCTGAACATGGATCCTTTAGCCCTTGTTGAGGACTGGTCTAAATTGAGCCTAACCTCTGCAGAAGAAGATGTGTCAGTTGATGTTGATCGCTCGGCTATTGATAGAACTAGCCAAATGTTGGGTTGCTGCCTCCTTGGTAAACTTTTGTCTCATCGTCATCTTACTCCAGAAGTTATGCGGAAAAATTATAAGGTGGCATGGAAGATAGATCATGGCTTGCAAGTTGAACTCTTAGGCAGAAATATCTTCCTATTTTGCTTTAATGAGGAAGATGATCGAGTTCGGGTGCTCAACCAAGGACCGTAG

Protein sequence

MEGLKSLHLGKILHVVDPKPEILVESDATEVINFLVGKEEYFTEIKNLLEEILQISVLIDEVSFAKCTCSSNEPAHHLARATISRNELFCQNSSSMEEEESGCRMGFWEGEGTFPTLTMGLFSFTVAISRGLWTCVSSSIPASSCKDLLSCFFSVYFSIPVFLNMDPLALVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAWKIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP

Homology

[Close]

BLAST of Lag0022115 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-13
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 165 MDPLALVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKN 224
           MD   L+ DW K  LTS E+++++DVD  A+    Q L   L+GKLL+ R ++ +V+ + 
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 225 YKVAWKIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
             +AWK++H L VE +G+N+FLF F  E D  RV+  GP
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGP 99

[Close]

BLAST of Lag0022115 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-13
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L+E+W    LTS E+ ++VD+D SA++ T + L   L+ KLLS R ++  V++   K+AW
Sbjct: 6   LLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIAW 65

Query: 230 KID-HGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K+D     V+++G NIFLF FN   DR R+L  GP
Sbjct: 66  KLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGP 100

[Close]

BLAST of Lag0022115 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-10
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L+E+W    LTS EE+ ++DVD SA   T   L   L+GKL   R +T  VM+   + AW
Sbjct: 6   LLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTAW 65

Query: 230 KID-HGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K++ +  +V+ LG N+FLF F    DR ++   GP
Sbjct: 66  KLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGP 100

[Close]

BLAST of Lag0022115 vs. NCBI nr
Match: OMP10859.1 (hypothetical protein COLO4_04212 [Corchorus olitorius])

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-09
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 169 ALVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVA 228
           AL + W K SLT  EE+  V VD   I  T      CL+GKLLS R +  EVMR      
Sbjct: 4   ALEDMWKKFSLTE-EEESDVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNILHWV 63

Query: 229 WKIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           WK+  GLQ++ +G  +F+F F +E ++ RV  Q P
Sbjct: 64  WKLSGGLQIQAVGDKLFIFQFEKEIEKDRVFQQSP 97

[Close]

BLAST of Lag0022115 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L + W   +LT  EE++ V VD   +D T      CL+GKLLS R +  EVMR    + W
Sbjct: 5   LTDLWENFNLTE-EENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVW 64

Query: 230 KIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K+  GLQV  +G N+F+F F  + ++ RV  Q P
Sbjct: 65  KLAGGLQVREIGENLFIFQFESDLEKERVYQQTP 97

[Close]

BLAST of Lag0022115 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.6e-14
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 165 MDPLALVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKN 224
           MD   L+ DW K  LTS E+++++DVD  A+    Q L   L+GKLL+ R ++ +V+ + 
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 225 YKVAWKIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
             +AWK++H L VE +G+N+FLF F  E D  RV+  GP
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGP 99

[Close]

BLAST of Lag0022115 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.6e-14
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L+E+W    LTS E+ ++VD+D SA++ T + L   L+ KLLS R ++  V++   K+AW
Sbjct: 6   LLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIAW 65

Query: 230 KID-HGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K+D     V+++G NIFLF FN   DR R+L  GP
Sbjct: 66  KLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGP 100

[Close]

BLAST of Lag0022115 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L+E+W    LTS EE+ ++DVD SA   T   L   L+GKL   R +T  VM+   + AW
Sbjct: 6   LLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTAW 65

Query: 230 KID-HGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K++ +  +V+ LG N+FLF F    DR ++   GP
Sbjct: 66  KLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGP 100

[Close]

BLAST of Lag0022115 vs. ExPASy TrEMBL
Match: A0A1R3KUZ6 (DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-09
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 169 ALVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVA 228
           AL + W K SLT  EE+  V VD   I  T      CL+GKLLS R +  EVMR      
Sbjct: 4   ALEDMWKKFSLTE-EEESDVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNILHWV 63

Query: 229 WKIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           WK+  GLQ++ +G  +F+F F +E ++ RV  Q P
Sbjct: 64  WKLSGGLQIQAVGDKLFIFQFEKEIEKDRVFQQSP 97

[Close]

BLAST of Lag0022115 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 170 LVEDWSKLSLTSAEEDVSVDVDRSAIDRTSQMLGCCLLGKLLSHRHLTPEVMRKNYKVAW 229
           L + W   +LT  EE++ V VD   +D T      CL+GKLLS R +  EVMR    + W
Sbjct: 5   LTDLWENFNLTE-EENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVW 64

Query: 230 KIDHGLQVELLGRNIFLFCFNEEDDRVRVLNQGP 264
           K+  GLQV  +G N+F+F F  + ++ RV  Q P
Sbjct: 65  KLAGGLQVREIGENLFIFQFESDLEKERVYQQTP 97

The following BLAST results are available for this feature:

BLAST of Lag0022115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	1.2e-13	42.42	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	1.2e-13	43.16	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	5.9e-10	40.00	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
OMP10859.1	5.0e-09	42.11	hypothetical protein COLO4_04212 [Corchorus olitorius]	[more]
OMO61345.1	1.1e-08	40.43	reverse transcriptase [Corchorus capsularis]	[more]

BLAST of Lag0022115 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	5.6e-14	42.42	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	5.6e-14	43.16	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	2.9e-10	40.00	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A1R3KUZ6	2.4e-09	42.11	DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212...	[more]
A0A1R3GTB5	5.4e-09	40.43	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV...	[more]

BLAST of Lag0022115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 197..263 e-value: 6.5E-9 score: 35.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022115.1	Lag0022115.1	mRNA