Lag0022107 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022107
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ankyrin repeat-containing protein NPR4-like
Location	chr7: 18433075 .. 18433662 (+)
RNA-Seq Expression	Lag0022107
Synteny	Lag0022107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATGAAGTTTCTTCCTCTACTGCTGCCGTAGCTACAGTCACTGCTTCGATTTCATCAGCAGTGAACGTCATCAATTCGTCTTTCGGTCACCCTCTCAGTACTGTTCTCACCGTGAAGTTGGATGAAAAGAATTATCTTTATGGAGAGGTATGGTTCTTCGCGATTTTACGCGGACAGAAAGTCGACGGCTACGTTCTTGGCACCAAAGCTCAACCACCAGAGCAAATAGAAGTTGCTACTGAAGCAGGGAAGACCTTAGAACTGAATCCATTGTTTGATGAGTGGATGACAGTGGACAAAGCTTTGTCCGGCTGGCTGTTTGGTTCCATGACACCAACAATTGCAGCTGACATCGTTAATTTCAAAACATCCAGAGAGGTCTGGAAAGCTCTTGAGAAGGTCTATGGAGCATCGAGCAAAGCGCGGATAAACCAACTCCATGGGATCCTACAAAACACGAAGAAAGTGAAGGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCGTATATTAATTAACATTAAAATACCGTTACGAAAACTCAATCAAACTTTAAACATACTTTAA

mRNA sequence

ATGGGAGATGAAGTTTCTTCCTCTACTGCTGCCGTAGCTACAGTCACTGCTTCGATTTCATCAGCAGTGAACGTCATCAATTCGTCTTTCGGTCACCCTCTCAGTACTGTTCTCACCGTGAAGTTGGATGAAAAGAATTATCTTTATGGAGAGGTATGGTTCTTCGCGATTTTACGCGGACAGAAAGTCGACGGCTACGTTCTTGGCACCAAAGCTCAACCACCAGAGCAAATAGAAGTTGCTACTGAAGCAGGGAAGACCTTAGAACTGAATCCATTGTTTGATGAGTGGATGACAGTGGACAAAGCTTTGTCCGGCTGGCTGTTTGGTTCCATGACACCAACAATTGCAGCTGACATCGTTAATTTCAAAACATCCAGAGAGGTCTGGAAAGCTCTTGAGAAGGTCTATGGAGCATCGAGCAAAGCGCGGATAAACCAACTCCATGGGATCCTACAAAACACGAAGAAAGTGAAGGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCGTATATTAATTAACATTAAAATACCGTTACGAAAACTCAATCAAACTTTAAACATACTTTAA

Coding sequence (CDS)

ATGGGAGATGAAGTTTCTTCCTCTACTGCTGCCGTAGCTACAGTCACTGCTTCGATTTCATCAGCAGTGAACGTCATCAATTCGTCTTTCGGTCACCCTCTCAGTACTGTTCTCACCGTGAAGTTGGATGAAAAGAATTATCTTTATGGAGAGGTATGGTTCTTCGCGATTTTACGCGGACAGAAAGTCGACGGCTACGTTCTTGGCACCAAAGCTCAACCACCAGAGCAAATAGAAGTTGCTACTGAAGCAGGGAAGACCTTAGAACTGAATCCATTGTTTGATGAGTGGATGACAGTGGACAAAGCTTTGTCCGGCTGGCTGTTTGGTTCCATGACACCAACAATTGCAGCTGACATCGTTAATTTCAAAACATCCAGAGAGGTCTGGAAAGCTCTTGAGAAGGTCTATGGAGCATCGAGCAAAGCGCGGATAAACCAACTCCATGGGATCCTACAAAACACGAAGAAAGTGAAGGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCGTATATTAATTAACATTAAAATACCGTTACGAAAACTCAATCAAACTTTAAACATACTTTAA

Protein sequence

MGDEVSSSTAAVATVTASISSAVNVINSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGKTLELNPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKARINQLHGILQNTKKVKGIKVPTQRKRIDWTLRRILINIKIPLRKLNQTLNIL

Homology

[Close]

BLAST of Lag0022107 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-39
Identity = 84/133 (63.16%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 27  NSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGK 86
           N+SFGHPL TVLTVKLD+KNY        A+LRGQK DGYVLGT A+PP+ +      G 
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 87  T--LELNPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKAR 146
           +  L++NP + EW  VD+AL GWLFGSMTP+IA D+V+F++SREVWKALE +YGA+SKAR
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKAR 150

Query: 147 INQLHGILQNTKK 158
           INQL  +LQNTKK
Sbjct: 151 INQLRNVLQNTKK 163

[Close]

BLAST of Lag0022107 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-39
Identity = 84/133 (63.16%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 27  NSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGK 86
           N+SFGHPL TVLTVKLD+KNY        A+LRGQK DGYVLGT A+PP+ +      G 
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 87  T--LELNPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKAR 146
           +  L++NP + EW  VD+AL GWLFGSMTP+IA D+V+F++SREVWKALE +YGA+SKAR
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKAR 150

Query: 147 INQLHGILQNTKK 158
           INQL  +LQNTKK
Sbjct: 151 INQLRNVLQNTKK 163

[Close]

BLAST of Lag0022107 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-35
Identity = 87/159 (54.72%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 1   MGDEVSSSTAAVATVTASISSAVNVINSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRG 60
           M +E  S +    +  A++ SA+N+   SFGHPLST LTVKLD+KNY   +    A+L G
Sbjct: 1   MANEGFSGSTTNNSQQATVFSAINI---SFGHPLSTALTVKLDDKNYTLWKGMVLAVLPG 60

Query: 61  QKVDGYVLGTKAQPPEQIEVATEAGKTLE--LNPLFDEWMTVDKALSGWLFGSMTPTIAA 120
           QKVDGYVL TK  P +     ++ G  LE  LNP ++EW  VD+A  GWLFGSMTP+IAA
Sbjct: 61  QKVDGYVLRTKTCPSKYTTTTSDTG-MLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAA 120

Query: 121 DIVNFKTSREVWKALEKVYGASSKARINQLHGILQNTKK 158
           D+VN +TS EVW ALE ++G++SKARINQL   LQNTKK
Sbjct: 121 DVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKK 155

[Close]

BLAST of Lag0022107 vs. NCBI nr
Match: XP_038874305.1 (uncharacterized protein LOC120067014 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-26
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 56  AILRGQKVDGYVLGTKAQPPEQIEVATEAGKTLEL--NPLFDEWMTVDKALSGWLFGSMT 115
           AIL+GQKVDG+VLGTK +P E ++ +TE G+T+EL  NP F+EW TVD+ L   L GSMT
Sbjct: 4   AILKGQKVDGFVLGTKPKPAEFLK-STEGGETIELLSNPEFEEWNTVDQVLLDCLLGSMT 63

Query: 116 PTIAADIVNFKTSREVWKALEKVYGASSKARINQLHGILQNTKKVK 160
           P+IA D++++K SR+VW ALEK+YGA SKAR+NQL   +QNTKK K
Sbjct: 64  PSIACDVMDYKNSRDVWTALEKLYGAFSKARVNQLRSAMQNTKKGK 108

[Close]

BLAST of Lag0022107 vs. NCBI nr
Match: TYK25744.1 (uncharacterized protein E5676_scaffold862G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-21
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 31  GHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGKTLEL 90
           G  LS VL VKLDEKNYL  +     +LRGQK + +VLGT  QP  +I    +   T   
Sbjct: 401 GTHLSAVLIVKLDEKNYLLLKAMILVVLRGQKRNKFVLGTIDQPTLKIPYVEK--DTQIP 460

Query: 91  NPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKARINQLHG 150
           NP ++ WM +D+++  WL+GSM+P+   +++N + S+ VWK LE  YGA++KA INQL  
Sbjct: 461 NPAYESWMAIDQSILAWLYGSMSPSTTCNVLNLQKSKNVWKTLENPYGAANKASINQLKS 520

Query: 151 ILQNTK 157
            LQ+ K
Sbjct: 521 SLQSRK 524

[Close]

BLAST of Lag0022107 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 84/133 (63.16%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 27  NSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGK 86
           N+SFGHPL TVLTVKLD+KNY        A+LRGQK DGYVLGT A+PP+ +      G 
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 87  T--LELNPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKAR 146
           +  L++NP + EW  VD+AL GWLFGSMTP+IA D+V+F++SREVWKALE +YGA+SKAR
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKAR 150

Query: 147 INQLHGILQNTKK 158
           INQL  +LQNTKK
Sbjct: 151 INQLRNVLQNTKK 163

[Close]

BLAST of Lag0022107 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 84/133 (63.16%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 27  NSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGK 86
           N+SFGHPL TVLTVKLD+KNY        A+LRGQK DGYVLGT A+PP+ +      G 
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 87  T--LELNPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKAR 146
           +  L++NP + EW  VD+AL GWLFGSMTP+IA D+V+F++SREVWKALE +YGA+SKAR
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKAR 150

Query: 147 INQLHGILQNTKK 158
           INQL  +LQNTKK
Sbjct: 151 INQLRNVLQNTKK 163

[Close]

BLAST of Lag0022107 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 87/159 (54.72%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 1   MGDEVSSSTAAVATVTASISSAVNVINSSFGHPLSTVLTVKLDEKNYLYGEVWFFAILRG 60
           M +E  S +    +  A++ SA+N+   SFGHPLST LTVKLD+KNY   +    A+L G
Sbjct: 1   MANEGFSGSTTNNSQQATVFSAINI---SFGHPLSTALTVKLDDKNYTLWKGMVLAVLPG 60

Query: 61  QKVDGYVLGTKAQPPEQIEVATEAGKTLE--LNPLFDEWMTVDKALSGWLFGSMTPTIAA 120
           QKVDGYVL TK  P +     ++ G  LE  LNP ++EW  VD+A  GWLFGSMTP+IAA
Sbjct: 61  QKVDGYVLRTKTCPSKYTTTTSDTG-MLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAA 120

Query: 121 DIVNFKTSREVWKALEKVYGASSKARINQLHGILQNTKK 158
           D+VN +TS EVW ALE ++G++SKARINQL   LQNTKK
Sbjct: 121 DVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKK 155

[Close]

BLAST of Lag0022107 vs. ExPASy TrEMBL
Match: A0A5A7T1E0 (AB hydrolase-1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00220 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-22
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 31  GHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGKTLEL 90
           G  LS VL VKLDEKNYL  +     +LRGQK + +VLGT  QP  +I    +   T   
Sbjct: 399 GTHLSAVLIVKLDEKNYLLLKAMILVVLRGQKRNKFVLGTIDQPTLKIPYVEK--DTQIP 458

Query: 91  NPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKARINQLHG 150
           NP ++ WM +D+++  WL+GSM+P+   +++N + S+ VWK LE  YGA++KA INQL  
Sbjct: 459 NPAYESWMAIDQSILAWLYGSMSPSTTCNVLNLQKSKNVWKTLENPYGAANKASINQLKS 518

Query: 151 ILQNTK 157
            LQ+ K
Sbjct: 519 SLQSRK 522

[Close]

BLAST of Lag0022107 vs. ExPASy TrEMBL
Match: A0A5D3DQA0 (AB hydrolase-1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00400 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-22
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 31  GHPLSTVLTVKLDEKNYLYGEVWFFAILRGQKVDGYVLGTKAQPPEQIEVATEAGKTLEL 90
           G  LS VL VKLDEKNYL  +     +LRGQK + +VLGT  QP  +I    +   T   
Sbjct: 401 GTHLSAVLIVKLDEKNYLLLKAMILVVLRGQKRNKFVLGTIDQPTLKIPYVEK--DTQIP 460

Query: 91  NPLFDEWMTVDKALSGWLFGSMTPTIAADIVNFKTSREVWKALEKVYGASSKARINQLHG 150
           NP ++ WM +D+++  WL+GSM+P+   +++N + S+ VWK LE  YGA++KA INQL  
Sbjct: 461 NPAYESWMAIDQSILAWLYGSMSPSTTCNVLNLQKSKNVWKTLENPYGAANKASINQLKS 520

Query: 151 ILQNTK 157
            LQ+ K
Sbjct: 521 SLQSRK 524

The following BLAST results are available for this feature:

BLAST of Lag0022107 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157748.1	3.4e-39	63.16	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	3.4e-39	63.16	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022143579.1	2.3e-35	54.72	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]
XP_038874305.1	1.5e-26	61.32	uncharacterized protein LOC120067014 [Benincasa hispida]	[more]
TYK25744.1	1.5e-21	45.24	uncharacterized protein E5676_scaffold862G00400 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0022107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0022107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU77	1.7e-39	63.16	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTZ7	1.7e-39	63.16	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CPQ7	1.1e-35	54.72	ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7T1E0	7.0e-22	45.24	AB hydrolase-1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DQA0	7.0e-22	45.24	AB hydrolase-1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 34..158
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 34..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022107.1	Lag0022107.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding