Lag0022096 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022096
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1
Location	chr7: 18294226 .. 18294804 (+)
RNA-Seq Expression	Lag0022096
Synteny	Lag0022096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGATTTGCAAGCGCTTGCTTCGTGTTCAAAATCATCTTCCTTCATCATTCCGCCGCATCAATGGTCGTTTCTCGTTTGTAAGTTCTTGGATTCTACCATCTCCATATTACCCTCCCAAGTTCTCGCCCTCGATTCCCGCTATTTCGGGTTCGATTACGTTTTTGGTCCATTTTAATTCAGAATTTGTTCAATTACGGGTGAATGGTCGGGGGCGTTCCAGATCCGGTTTTCGGGCTTCGACGAGTGGGTATCGCCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCGTGGGTATCATCGATCTGGTCGTGGGCATTGCAGATCTGGAGATCGAGGGTCATTCACGGGCGTCGTGGGTCTTCGTGCGCAAGGAGGGACGAGGGAGAGAAAGAGGACGCCAGGGAGGGTCTTCGTGGGTCTTCATCGTGGCTGATTCAAGGTGGTGTTTGTGGGTTCTTCGCGCGTAAGGAGGGTCTTCACCGTGGGTTTTCTTGA

mRNA sequence

ATGAATCAGATTTGCAAGCGCTTGCTTCGTGTTCAAAATCATCTTCCTTCATCATTCCGCCGCATCAATGGTCGTTTCTCGTTTGTAAGTTCTTGGATTCTACCATCTCCATATTACCCTCCCAAGTTCTCGCCCTCGATTCCCGCTATTTCGGGTTCGATTACGTTTTTGGTCCATTTTAATTCAGAATTTGTTCAATTACGGGTGAATGGTCGGGGGCGTTCCAGATCCGGTTTTCGGGCTTCGACGAGTGGGTATCGCCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCGTGGGTATCATCGATCTGGTCGTGGGCATTGCAGATCTGGAGATCGAGGGTCATTCACGGGCGTCGTGGGTCTTCGTGCGCAAGGAGGGACGAGGGAGAGAAAGAGGACGCCAGGGAGGGTCTTCGTGGGTCTTCATCGTGGCTGATTCAAGGTGGTGTTTGTGGGTTCTTCGCGCGTAAGGAGGGTCTTCACCGTGGGTTTTCTTGA

Coding sequence (CDS)

ATGAATCAGATTTGCAAGCGCTTGCTTCGTGTTCAAAATCATCTTCCTTCATCATTCCGCCGCATCAATGGTCGTTTCTCGTTTGTAAGTTCTTGGATTCTACCATCTCCATATTACCCTCCCAAGTTCTCGCCCTCGATTCCCGCTATTTCGGGTTCGATTACGTTTTTGGTCCATTTTAATTCAGAATTTGTTCAATTACGGGTGAATGGTCGGGGGCGTTCCAGATCCGGTTTTCGGGCTTCGACGAGTGGGTATCGCCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCGTGGGTATCATCGATCTGGTCGTGGGCATTGCAGATCTGGAGATCGAGGGTCATTCACGGGCGTCGTGGGTCTTCGTGCGCAAGGAGGGACGAGGGAGAGAAAGAGGACGCCAGGGAGGGTCTTCGTGGGTCTTCATCGTGGCTGATTCAAGGTGGTGTTTGTGGGTTCTTCGCGCGTAAGGAGGGTCTTCACCGTGGGTTTTCTTGA

Protein sequence

MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSPYYPPKFSPSIPAISGSITFLVHFNSEFVQLRVNGRGRSRSGFRASTSGYRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSWVSSIWSWALQIWRSRVIHGRRGSSCARRDEGEKEDAREGLRGSSSWLIQGGVCGFFARKEGLHRGFS

Homology

[Close]

BLAST of Lag0022096 vs. NCBI nr
Match: XP_038874680.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida] >XP_038874681.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida] >XP_038874682.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 9.6e-18
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSPYYPPKFSPSIPAISGSITFLVHF 60
          MN+I KRLLRV+NH PSSFR INGR S VSS ILP+ YYPPKFS  IPA+SGSITFLV F
Sbjct: 1  MNRISKRLLRVRNHFPSSFRSINGRLSSVSSSILPALYYPPKFSLLIPALSGSITFLVRF 60

Query: 61 NSEFVQ 67
          NSEFV+
Sbjct: 61 NSEFVR 66

[Close]

BLAST of Lag0022096 vs. NCBI nr
Match: XP_022958744.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita moschata] >XP_022958746.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita moschata] >XP_022958747.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita moschata] >XP_022958748.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-16
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSP-YYPPKFSPSIPAISGSITFLVH 60
          MN +CKRLLRV+NH PSSFR +NGRFS VSS I PSP YY PKFS SIPA S SI FLVH
Sbjct: 2  MNGVCKRLLRVRNHFPSSFRSVNGRFSSVSSSI-PSPLYYRPKFSLSIPAFSCSIAFLVH 61

Query: 61 FNSEFVQ 67
          FNSEFV+
Sbjct: 62 FNSEFVR 67

[Close]

BLAST of Lag0022096 vs. NCBI nr
Match: XP_023548130.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548131.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-16
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSP-YYPPKFSPSIPAISGSITFLVH 60
          MN +CKRL+RV+NH PSSFR +NGRFS VSS I PSP YY PKFS SIPA S SI FLVH
Sbjct: 2  MNGVCKRLIRVRNHFPSSFRSVNGRFSSVSSSI-PSPLYYRPKFSLSIPAFSCSIAFLVH 61

Query: 61 FNSEFVQ 67
          FNSEFV+
Sbjct: 62 FNSEFVR 67

[Close]

BLAST of Lag0022096 vs. NCBI nr
Match: XP_022138561.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-15
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSPYYPPKFSPSIPAISGSITFLVHF 60
          MNQICKRLLRV+N LPSSF   NG F +VSS I+P  +YPPKF+ SIPA SGSITFLVHF
Sbjct: 1  MNQICKRLLRVRNRLPSSFSSSNGHFPYVSSSIIPPLHYPPKFALSIPAFSGSITFLVHF 60

Query: 61 NSE 64
           SE
Sbjct: 61 YSE 63

[Close]

BLAST of Lag0022096 vs. NCBI nr
Match: KAG7013419.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-15
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MNQICKRLLRVQNHLPSSFRRINGRFSFVSSWILPSPYY-PPKFSPSIPAISGSITFLVH 60
          MN +CKRLLRV+NH PSSFR +NGRFS VSS I PSP Y  PKFS SIPA S SI FLVH
Sbjct: 1  MNGVCKRLLRVRNHFPSSFRSVNGRFSSVSSSI-PSPLYCRPKFSLSIPAFSCSIAFLVH 60

Query: 61 FNSEFVQ 67
          FNSEFV+
Sbjct: 61 FNSEFVR 66

The following BLAST results are available for this feature:

BLAST of Lag0022096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874680.1	9.6e-18	77.27	pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ...	[more]
XP_022958744.1	5.3e-16	76.12	pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ...	[more]
XP_023548130.1	9.0e-16	74.63	pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ...	[more]
XP_022138561.1	2.0e-15	73.02	pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Momordica ...	[more]
KAG7013419.1	4.5e-15	74.63	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Lag0022096 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0022096.1	Lag0022096.1	mRNA