Lag0021771 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021771
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein 90
Location	chr7: 11791978 .. 11792293 (+)
RNA-Seq Expression	Lag0021771
Synteny	Lag0021771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCGCGTGATTCCGGTCGTCGACATTTACACCATTGAGCCATCCAATCTCTCCGGTACGTACTTGGATATACTAATTAACTTTATATATATTTTTTTAAAGAACTTTATATAATTAATTAAGTGATTATTTATTTATGGGTTTTATTTATTTTTGTTGCAGGGTGTTCCGGGGGTGGTGTAGGAGGGACAGTGAGCAGTGGTTTTACTTTGTGAAGCAGCAAGAGAGGGAGGCTGAACAGAACGACGTCGTTTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCCATGTCTACTCCTCCAACAATAG

mRNA sequence

ATGCACCGCGTGATTCCGGTCGTCGACATTTACACCATTGAGCCATCCAATCTCTCCGGTACGGTGTTCCGGGGGTGGTGTAGGAGGGACAGTGAGCAGTGGTTTTACTTTGTGAAGCAGCAAGAGAGGGAGGCTGAACAGAACGACGTCGTTTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCCATGTCTACTCCTCCAACAATAG

Coding sequence (CDS)

ATGCACCGCGTGATTCCGGTCGTCGACATTTACACCATTGAGCCATCCAATCTCTCCGGTACGGTGTTCCGGGGGTGGTGTAGGAGGGACAGTGAGCAGTGGTTTTACTTTGTGAAGCAGCAAGAGAGGGAGGCTGAACAGAACGACGTCGTTTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCCATGTCTACTCCTCCAACAATAG

Protein sequence

MHRVIPVVDIYTIEPSNLSGTVFRGWCRRDSEQWFYFVKQQEREAEQNDVVWIWVLEGHRLIGPCLLLQQ

Homology

[Close]

BLAST of Lag0021771 vs. NCBI nr
Match: XP_023533663.1 (NAC domain-containing protein 90 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRGWCRRDSEQWFYFVKQQEREA 46
          +HRVIPVVDIY+IEP NLSG      CRRDSEQWF+FVKQQEREA
Sbjct: 46 IHRVIPVVDIYSIEPFNLSGCSGER-CRRDSEQWFFFVKQQEREA 89

[Close]

BLAST of Lag0021771 vs. NCBI nr
Match: XP_022958454.1 (NAC domain-containing protein 90 [Cucurbita moschata] >KAG6605975.1 NAC domain-containing protein 90, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035927.1 NAC domain-containing protein 90, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRGWCRRDSEQWFYFVKQQEREA 46
          +HRVIPVVDIY+IEP NLSG      CRRDSEQWF+FVKQQEREA
Sbjct: 46 IHRVIPVVDIYSIEPFNLSGCSGER-CRRDSEQWFFFVKQQEREA 89

[Close]

BLAST of Lag0021771 vs. NCBI nr
Match: XP_022995147.1 (NAC domain-containing protein 90 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRGW----CRRDSEQWFYFVKQQEREA 46
          +HRVIPVVDIY+IEP NLS      W    CRRDSEQWF+FVKQQEREA
Sbjct: 46 IHRVIPVVDIYSIEPFNLS-----RWSGERCRRDSEQWFFFVKQQEREA 89

[Close]

BLAST of Lag0021771 vs. NCBI nr
Match: XP_008449583.1 (PREDICTED: NAC domain-containing protein 90 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-08
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRG-WCRRDSEQWFYFVKQQEREA 46
          +HRVIPVVDIY IEP NLS   + G  CRRDSEQWF+FVKQQEREA
Sbjct: 49 IHRVIPVVDIYEIEPFNLSR--YSGERCRRDSEQWFFFVKQQEREA 92

[Close]

BLAST of Lag0021771 vs. NCBI nr
Match: TYJ96056.1 (NAC domain-containing protein 90 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-08
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRG-WCRRDSEQWFYFVKQQEREA 46
          +HRVIPVVDIY IEP NLS   + G  CRRDSEQWF+FVKQQEREA
Sbjct: 49 IHRVIPVVDIYEIEPFNLSR--YSGERCRRDSEQWFFFVKQQEREA 92

[Close]

BLAST of Lag0021771 vs. ExPASy Swiss-Prot
Match: Q9FMR3 (NAC domain-containing protein 90 OS=Arabidopsis thaliana OX=3702 GN=NAC090 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-08
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRGWCRRDSEQWFYFVKQQEREA 46
          MHRVIPV+D++ +EPS+L   V    CR D+EQWF+FV +QEREA
Sbjct: 35 MHRVIPVLDVFEVEPSHLP-NVAGVRCRGDAEQWFFFVPRQEREA 78

[Close]

BLAST of Lag0021771 vs. ExPASy Swiss-Prot
Match: Q9M290 (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN=NAC061 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1  MHRVIPVVDIYTIEPSNLSGTVFRGWCRRDSEQWFYFVKQQEREA 46
          +H +IP++D++++EP+ L        CR D+EQW +FV +QEREA
Sbjct: 34 IHSLIPILDVFSVEPTQLPNLAGER-CRGDAEQWIFFVPRQEREA 77

The following BLAST results are available for this feature:

BLAST of Lag0021771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533663.1	2.3e-09	77.78	NAC domain-containing protein 90 [Cucurbita pepo subsp. pepo]	[more]
XP_022958454.1	2.3e-09	77.78	NAC domain-containing protein 90 [Cucurbita moschata] >KAG6605975.1 NAC domain-c...	[more]
XP_022995147.1	2.5e-08	71.43	NAC domain-containing protein 90 [Cucurbita maxima]	[more]
XP_008449583.1	4.3e-08	76.09	PREDICTED: NAC domain-containing protein 90 [Cucumis melo]	[more]
TYJ96056.1	4.3e-08	76.09	NAC domain-containing protein 90 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMR3	4.5e-08	60.00	NAC domain-containing protein 90 OS=Arabidopsis thaliana OX=3702 GN=NAC090 PE=1 ...	[more]
Q9M290	1.2e-05	44.44	Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN=NAC...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021771.1	Lag0021771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding