Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTGCCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCTGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGCTTGCGTGAAGATGATAAGATAGCAGAGCAATCTGTTGTGGATTTACCTGTGGATGGAGTAGAACCATACATAGGTATGGAGTTTGGTTCTAGAGACGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGCATTGGATTCACCGTACGAATACATCACAATCGCCGTTCCCGTGTGAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACAAGAGAGGGATGTCAAGCAATGATAAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCACAATCATCTGTTACTGAGTCCTAGTAAAGTTCCATGGCGAGGATCTGGAAAAAACTTGCTCAGTGAGGTATGTTTGGGACTTGGTTTTCTACATAACTAA
mRNA sequence
ATGGACTGCCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCTGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGCTTGCGTGAAGATGATAAGATAGCAGAGCAATCTGTTGTGGATTTACCTGTGGATGGAGTAGAACCATACATAGGTATGGAGTTTGGTTCTAGAGACGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGCATTGGATTCACCGTACGAATACATCACAATCGCCGTTCCCGTGTGAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACAAGAGAGGGATGTCAAGCAATGATAAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCACAATCATCTGTTACTGAGTCCTAGTAAAGTTCCATGGCGAGGATCTGGAAAAAACTTGCTCAGTGAGGTATGTTTGGGACTTGGTTTTCTACATAACTAA
Coding sequence (CDS)
ATGGACTGCCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCTGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGCTTGCGTGAAGATGATAAGATAGCAGAGCAATCTGTTGTGGATTTACCTGTGGATGGAGTAGAACCATACATAGGTATGGAGTTTGGTTCTAGAGACGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGCATTGGATTCACCGTACGAATACATCACAATCGCCGTTCCCGTGTGAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACAAGAGAGGGATGTCAAGCAATGATAAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCACAATCATCTGTTACTGAGTCCTAGTAAAGTTCCATGGCGAGGATCTGGAAAAAACTTGCTCAGTGAGGTATGTTTGGGACTTGGTTTTCTACATAACTAA
Protein sequence
MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVEPYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLLSEVCLGLGFLHN
Homology
BLAST of Lag0021727 vs. NCBI nr
Match:
XP_022932719.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata])
HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0
Query: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVE 60
MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDK+AEQSVVDLP+DG E
Sbjct: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60
Query: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
PYIGMEFGSRDEAREFYVNYGRR+GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61 PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
Query: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
RKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
Query: 181 SE 183
+E
Sbjct: 181 TE 182
BLAST of Lag0021727 vs. NCBI nr
Match:
XP_023539030.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0
Query: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVE 60
MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDK+AEQSVVDLP+DG E
Sbjct: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60
Query: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
PYIGMEFGSRDEAREFYVNYGRR+GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61 PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
Query: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
RKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
Query: 181 SE 183
+E
Sbjct: 181 TE 182
BLAST of Lag0021727 vs. NCBI nr
Match:
KAG6597645.1 (Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0
Query: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVE 60
MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDK+AEQSVVDLP+DG E
Sbjct: 30 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 89
Query: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
PYIGMEFGSRDEAREFYVNYGRR+GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 90 PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 149
Query: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
RKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL
Sbjct: 150 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 209
Query: 181 SE 183
+E
Sbjct: 210 TE 211
BLAST of Lag0021727 vs. NCBI nr
Match:
XP_022145121.1 (protein FAR1-RELATED SEQUENCE 5-like [Momordica charantia] >XP_022145122.1 protein FAR1-RELATED SEQUENCE 5-like [Momordica charantia])
HSP 1 Score: 372.1 bits (954), Expect = 2.9e-99
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 0
Query: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVE 60
MDC+SNHTFDSDESD+DIQAEIYEKGGSIDDIHK+L+FCLREDDK+AEQSVVD PVDGVE
Sbjct: 1 MDCESNHTFDSDESDVDIQAEIYEKGGSIDDIHKNLNFCLREDDKVAEQSVVDFPVDGVE 60
Query: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
Query: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL
Sbjct: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
Query: 181 SE 183
E
Sbjct: 181 GE 182
BLAST of Lag0021727 vs. NCBI nr
Match:
XP_022972112.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita maxima])
HSP 1 Score: 370.5 bits (950), Expect = 8.5e-99
Identity = 175/182 (96.15%), Postives = 179/182 (98.35%), Query Frame = 0
Query: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVDLPVDGVE 60
MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDK+AEQSVVDLP+DG E
Sbjct: 1 MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60
Query: 61 PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
PYIGMEFGSRDEAREFYVNYGR +GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61 PYIGMEFGSRDEAREFYVNYGRHVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
Query: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
RKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180
Query: 181 SE 183
+E
Sbjct: 181 TE 182
BLAST of Lag0021727 vs. ExPASy Swiss-Prot
Match:
Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = 0
Query: 10 DSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKIAEQSVVD---------------- 69
D++ D DI + GG +DD D++ +DD + + ++
Sbjct: 3 DNEVLDFDIGVGV-SSGGDVDDDAIDIEHHALDDDDMLDSPIMPCGNGLVGNSGNYFPNQ 62
Query: 70 ----LPVDGVEPYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVC 129
+ +EPY G+EF S + A+ FY +Y RRIGF+ R+ +RRSR + +I + FVC
Sbjct: 63 EEEACDLLDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVC 122
Query: 130 SKEGFRAKKYVCRKDRILPAP-PITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPS 171
+KEGFR KDR + P ITR GC+A + + ++D GKW V+ FVKDHNH L+ P
Sbjct: 123 AKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPD 182
BLAST of Lag0021727 vs. ExPASy Swiss-Prot
Match:
Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 0
Query: 58 GVEPYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAK 117
GVEPY+G+EF + +EAREFY Y R GF VR RSR + V + FVCSKEGF+
Sbjct: 40 GVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN 99
Query: 118 KYVCRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLL 165
+R GC A IR+ RD GKW + + K+HNH L
Sbjct: 100 ---------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
BLAST of Lag0021727 vs. ExPASy Swiss-Prot
Match:
Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 0
Query: 58 GVEPYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAK 117
G+EPY+G+EF + +EAR++Y +Y R GF VR RSR + V + FVCSKEGF+
Sbjct: 25 GLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN 84
Query: 118 KYVCRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNH 163
+R GC A IR+ RD GKW + + K+HNH
Sbjct: 85 ---------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNH 114
BLAST of Lag0021727 vs. ExPASy Swiss-Prot
Match:
Q9ZVC9 (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2)
HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 0
Query: 60 EPYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKY 119
EP +GMEF S EA+ FY Y R++GFT ++ R + V ++FVCS R+K+
Sbjct: 48 EPCVGMEFNSEKEAKSFYDEYSRQLGFTSKL----LPRTDGSVSVREFVCSSSSKRSKRR 107
Query: 120 VCRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLS 167
+ E C AM+R+ L+ KW VTKFVK+H H L S
Sbjct: 108 L-------------SESCDAMVRIELQGHEKWVVTKFVKEHTHGLAS 137
BLAST of Lag0021727 vs. ExPASy Swiss-Prot
Match:
Q9SSQ4 (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 0
Query: 35 DLDFCLREDDKIAEQS----------VVDLPVDGVEPYIGMEFGSRDEAREFYVNYGRRI 94
D+ FC E+ K E++ +VD + P +GMEF S D+A +Y Y +
Sbjct: 49 DVGFCQNEERKSEEETMGGFDEQSGLLVDERKEFDAPAVGMEFESYDDAYNYYNCYASEV 108
Query: 95 GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMIRLA 154
GF VR+ ++ R + + G CS +GF+ V R + TR GC AMIR+
Sbjct: 109 GFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVNRVRK------ETRTGCPAMIRMR 168
Query: 155 LRDGGKWAVTKFVKDHNHLL 165
D +W V + DHNHLL
Sbjct: 169 QVDSKRWRVVEVTLDHNHLL 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022932719.1 | 2.2e-99 | 96.70 | protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata] | [more] |
XP_023539030.1 | 2.2e-99 | 96.70 | protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6597645.1 | 2.2e-99 | 96.70 | Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022145121.1 | 2.9e-99 | 96.15 | protein FAR1-RELATED SEQUENCE 5-like [Momordica charantia] >XP_022145122.1 prote... | [more] |
XP_022972112.1 | 8.5e-99 | 96.15 | protein FAR1-RELATED SEQUENCE 5-like [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Q9SZL8 | 1.7e-25 | 36.26 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=... | [more] |
Q3E7I5 | 2.0e-18 | 44.86 | Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S... | [more] |
Q9M8J3 | 1.3e-17 | 41.90 | Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=... | [more] |
Q9ZVC9 | 2.3e-14 | 39.25 | Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=... | [more] |
Q9SSQ4 | 1.5e-13 | 33.57 | Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=... | [more] |