Lag0021479 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021479
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr7: 8170421 .. 8170756 (-)
RNA-Seq Expression	Lag0021479
Synteny	Lag0021479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTAATGTCGATGCTGCTTGTGATGTTCAAAGTAAAAACATTGGCATTGGAGTTGTGATTCGAGATTCTGGCGGCAATTTGAAAGTCACCATGTTAAATTCTTTCAACTTGTTTCTCAGTCCTTTATGCGCAGAGACTTGTGAAGTTATGGAGGGGTTTCATTTGACTAATAGATTGGAGATAAAACAGGTGAATATTCTCTCTGATTCATTATCTCTTATGGTCATTCTTAACCGGGAGGAGGAATGTGTAGCTGAGATTCTTTCCTTGGTATGGGATATTCAGAAATTACAGGACCAGTTTGTAAGTGCGGATTTTTTATTATATTAA

mRNA sequence

ATGGTAATTAATGTCGATGCTGCTTGTGATGTTCAAAGTAAAAACATTGGCATTGGAGTTGTGATTCGAGATTCTGGCGGCAATTTGAAAGTCACCATGTTAAATTCTTTCAACTTGTTTCTCAGTCCTTTATGCGCAGAGACTTGTGAAGTTATGGAGGGGTTTCATTTGACTAATAGATTGGAGATAAAACAGGTGAATATTCTCTCTGATTCATTATCTCTTATGGTCATTCTTAACCGGGAGGAGGAATGTGTAGCTGAGATTCTTTCCTTGGTATGGGATATTCAGAAATTACAGGACCAGTTTGTAAGTGCGGATTTTTTATTATATTAA

Coding sequence (CDS)

ATGGTAATTAATGTCGATGCTGCTTGTGATGTTCAAAGTAAAAACATTGGCATTGGAGTTGTGATTCGAGATTCTGGCGGCAATTTGAAAGTCACCATGTTAAATTCTTTCAACTTGTTTCTCAGTCCTTTATGCGCAGAGACTTGTGAAGTTATGGAGGGGTTTCATTTGACTAATAGATTGGAGATAAAACAGGTGAATATTCTCTCTGATTCATTATCTCTTATGGTCATTCTTAACCGGGAGGAGGAATGTGTAGCTGAGATTCTTTCCTTGGTATGGGATATTCAGAAATTACAGGACCAGTTTGTAAGTGCGGATTTTTTATTATATTAA

Protein sequence

MVINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQFVSADFLLY

Homology

[Close]

BLAST of Lag0021479 vs. NCBI nr
Match: XP_015381032.1 (uncharacterized protein LOC107174551 [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-05
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 3   INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLE 62
           +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  
Sbjct: 126 VNVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEWGLQVAEKAN 185

Query: 63  IKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQF 104
           I      SDSL ++ ++N++   + EI  L+ DIQ+    F
Sbjct: 186 ITFRIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNF 226

[Close]

BLAST of Lag0021479 vs. NCBI nr
Match: XP_024041966.1 (uncharacterized protein LOC112099096 [Citrus clementina])

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-05
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 3   INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLE 62
           +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  
Sbjct: 113 VNVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEWGLQVAEKAN 172

Query: 63  IKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQF 104
           I      SDSL ++ ++N++   + EI  L+ DIQ+    F
Sbjct: 173 ITFRIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNF 213

[Close]

BLAST of Lag0021479 vs. NCBI nr
Match: XP_015386106.1 (uncharacterized protein LOC107177190 [Citrus sinensis] >XP_024043313.1 uncharacterized protein LOC112099989 [Citrus clementina])

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-05
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 3   INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLE 62
           +NVDAA DV+ +  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  
Sbjct: 131 VNVDAAVDVEKQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEWGLQVAEKAN 190

Query: 63  IKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQF 104
           I      SDSL ++ ++N++   + EI  L+ DIQ+    F
Sbjct: 191 ITFGIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNF 231

[Close]

BLAST of Lag0021479 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina])

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-05
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 3    INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLE 62
            +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  
Sbjct: 1008 VNVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEWGLKVAEKAH 1067

Query: 63   IKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQF 104
            I      SDSL ++ ++N++   + EI  L+ DIQ+    F
Sbjct: 1068 ITFGIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNF 1108

[Close]

BLAST of Lag0021479 vs. NCBI nr
Match: XP_022142956.1 (uncharacterized protein LOC111012950 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 3   INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLE 62
           INVD AC        IG+V R+  G +          +  PL AE+  ++EG  L + L 
Sbjct: 35  INVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLN 94

Query: 63  IKQVNILSDSLSLMVILNREEECVAEILSLVW--DIQKLQDQFVSADFL 110
           I+QV   SDSL L+ +L   E+ ++   S VW  DI+ L   F+  +FL
Sbjct: 95  IQQVQFESDSLQLINLLT--EDPISWCGSNVWLEDIRVLARNFIDFNFL 141

The following BLAST results are available for this feature:

BLAST of Lag0021479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015381032.1	7.0e-05	34.65	uncharacterized protein LOC107174551 [Citrus sinensis]	[more]
XP_024041966.1	7.0e-05	34.65	uncharacterized protein LOC112099096 [Citrus clementina]	[more]
XP_015386106.1	9.2e-05	34.65	uncharacterized protein LOC107177190 [Citrus sinensis] >XP_024043313.1 uncharact...	[more]
XP_024037590.1	9.2e-05	34.65	uncharacterized protein LOC112097210 [Citrus clementina]	[more]
XP_022142956.1	1.2e-04	34.86	uncharacterized protein LOC111012950 [Momordica charantia]	[more]

BLAST of Lag0021479 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..110 e-value: 2.7E-8 score: 35.8
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 4..108 e-value: 6.3E-14 score: 51.9
None	No IPR available	PANTHER	PTHR47074:SF25	SUBFAMILY NOT NAMED	coord: 3..103
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 3..103
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 3..105 e-value: 1.00135E-11 score: 55.398
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021479.1	Lag0021479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity