Lag0021156 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021156
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Abhydrolase_3 domain-containing protein
Location	chr7: 5140042 .. 5140362 (+)
RNA-Seq Expression	Lag0021156
Synteny	Lag0021156

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACATGTCGATGGAAATTTAATACATTGTCCGTAACCTCTCTATTCGCGTCTTCGCCCCTTCCTCCGACGTCGCCTCGCTTCCCATATATCGTCCTCTTCTTCCACGGTGGCGGCTTCACCTTACCCAACAATTCCTCCTTCTCTTATGCTGTCATATCCCCGTCATCGTCCTCTCCGTCGACTATCGCCTCTCTCCGATTTCTCGACTACCAAAACAAAACCCTCCGCCTCCTCCCCCCACCGCAGATCTCTCCCAAATGCTTCCTCGCCGGCAACCGCGTCGACGCGAACCTCACCCACCACGTCGCCGTCTGA

mRNA sequence

ATGTCGACATGTCGATGGAAATTTAATACATTGTCCGTAACCTCTCTATTCGCGTCTTCGCCCCTTCCTCCGACGTCGCCTCGCTTCCCATATATCGTCCTCTTCTTCCACGGTGGCGGCTTCACCTTACCCAACAATTCCTCCTTCTCTTATGCTGTCATATCCCCGTCATCGTCCTCTCCGTCGACTATCGCCTCTCTCCGATTTCTCGACTACCAAAACAAAACCCTCCGCCTCCTCCCCCCACCGCAGATCTCTCCCAAATGCTTCCTCGCCGGCAACCGCGTCGACGCGAACCTCACCCACCACGTCGCCGTCTGA

Coding sequence (CDS)

ATGTCGACATGTCGATGGAAATTTAATACATTGTCCGTAACCTCTCTATTCGCGTCTTCGCCCCTTCCTCCGACGTCGCCTCGCTTCCCATATATCGTCCTCTTCTTCCACGGTGGCGGCTTCACCTTACCCAACAATTCCTCCTTCTCTTATGCTGTCATATCCCCGTCATCGTCCTCTCCGTCGACTATCGCCTCTCTCCGATTTCTCGACTACCAAAACAAAACCCTCCGCCTCCTCCCCCCACCGCAGATCTCTCCCAAATGCTTCCTCGCCGGCAACCGCGTCGACGCGAACCTCACCCACCACGTCGCCGTCTGA

Protein sequence

MSTCRWKFNTLSVTSLFASSPLPPTSPRFPYIVLFFHGGGFTLPNNSSFSYAVISPSSSSPSTIASLRFLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV

Homology

[Close]

BLAST of Lag0021156 vs. NCBI nr
Match: XP_038896610.1 (probable carboxylesterase 18 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-10
Identity = 43/98 (43.88%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 32  IVLFFHGGGFTLPNNSSFSYAVI-------------------SPSSSSPSTIAS----LR 91
           +++FFHGGGF   +NSSFSYA +                   SP    PS        LR
Sbjct: 148 VLIFFHGGGFAFLSNSSFSYAAVCRRLARRIPAVVLSVDYRLSPEHRFPSQYDDGFDVLR 207

Query: 92  FLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV 107
           FLD++N T+ LLPP     KCFLAG+   ANL HHVAV
Sbjct: 208 FLDHENNTVGLLPPSADLSKCFLAGDSAGANLAHHVAV 245

[Close]

BLAST of Lag0021156 vs. NCBI nr
Match: KGN45196.2 (hypothetical protein Csa_016756 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 43/98 (43.88%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 32  IVLFFHGGGFTLPNNSSFSYAVI-------------------SPSSSSPSTIAS----LR 91
           I++FFHGGGF L +NSSFSY  +                   SP    PS        LR
Sbjct: 130 ILIFFHGGGFALLSNSSFSYVAVCRRFARRLPAIVLSVDYRLSPEHRFPSQYDDGFDVLR 189

Query: 92  FLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV 107
           FLD+++ T+ LLPP     KCFLAG+   ANL HHVAV
Sbjct: 190 FLDHESNTIGLLPPNADLSKCFLAGDSAGANLAHHVAV 227

[Close]

BLAST of Lag0021156 vs. NCBI nr
Match: XP_004148971.1 (probable carboxylesterase 18 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 43/98 (43.88%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 32  IVLFFHGGGFTLPNNSSFSYAVI-------------------SPSSSSPSTIAS----LR 91
           I++FFHGGGF L +NSSFSY  +                   SP    PS        LR
Sbjct: 96  ILIFFHGGGFALLSNSSFSYVAVCRRFARRLPAIVLSVDYRLSPEHRFPSQYDDGFDVLR 155

Query: 92  FLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV 107
           FLD+++ T+ LLPP     KCFLAG+   ANL HHVAV
Sbjct: 156 FLDHESNTIGLLPPNADLSKCFLAGDSAGANLAHHVAV 193

[Close]

BLAST of Lag0021156 vs. NCBI nr
Match: KAG7014576.1 (putative carboxylesterase 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 32  IVLFFHGGGFTLPNNSSFSYAV-------------------ISPSSSSPSTIAS----LR 91
           I++FFHGGGF+  +N+SFSY                     +SP    PS        L+
Sbjct: 122 ILIFFHGGGFSFLSNASFSYVTLYRCFARRIPAVVLSVNYRLSPEHRFPSQYDDGFDVLQ 181

Query: 92  FLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV 107
           FLD++N T+ LLPP     KCFLAG+   ANL HHVAV
Sbjct: 182 FLDHENNTIGLLPPTADLSKCFLAGDSAGANLAHHVAV 219

[Close]

BLAST of Lag0021156 vs. NCBI nr
Match: XP_008451245.1 (PREDICTED: probable carboxylesterase 18 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 42/98 (42.86%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 32  IVLFFHGGGFTLPNNSSFSYAVI-------------------SPSSSSPSTIAS----LR 91
           I++FFHGGGF L +NSSFSY  +                   SP    PS        LR
Sbjct: 98  ILIFFHGGGFALLSNSSFSYVAVCRRFARRLPAIVLSVDYRLSPEHRFPSQYDDGFDVLR 157

Query: 92  FLDYQNKTLRLLPPPQISPKCFLAGNRVDANLTHHVAV 107
           FLD+++ T+ LLPP      CFLAG+   ANL HHVAV
Sbjct: 158 FLDHESNTIGLLPPNADLSNCFLAGDSAGANLAHHVAV 195

The following BLAST results are available for this feature:

BLAST of Lag0021156 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896610.1	6.9e-10	43.88	probable carboxylesterase 18 [Benincasa hispida]	[more]
KGN45196.2	2.0e-09	43.88	hypothetical protein Csa_016756 [Cucumis sativus]	[more]
XP_004148971.1	2.0e-09	43.88	probable carboxylesterase 18 [Cucumis sativus]	[more]
KAG7014576.1	7.7e-09	41.84	putative carboxylesterase 18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_008451245.1	7.7e-09	42.86	PREDICTED: probable carboxylesterase 18 [Cucumis melo]	[more]

BLAST of Lag0021156 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002168	Lipase, GDXG, putative histidine active site	PROSITE	PS01173	LIPASE_GDXG_HIS	coord: 33..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021156.1	Lag0021156.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity