Lag0021093 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021093
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptiondCTP pyrophosphatase 1
Locationchr7: 4574643 .. 4575341 (-)
RNA-Seq ExpressionLag0021093
SyntenyLag0021093
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGGGCGAGCAGGTCGAAATCGATGTCGACGTTAGCCTCAAAGACCTCTCTTCGAAGCTCGAGGAGTTTGCCAAGGCCAGGAACTGGGAGAAGTATCATAGTCCTAGAAACCTTCTTCTCGCTATGGTCATTCTTTTTCCTCTTTCTTATTTCAAATTTCAAGATTTTTTTTTTGTTTGAAATCAAGGGAGTCTCTCCTTCTAGATCTCAAGGGAAACAGTAGATGTCTTAACTGTTGAACTATGTTGATATTGGCATAAAATCCCAAATATATGTTTTGTTCAAGCAAAATTCGCACTATATATGTTTGTTTTAGAAATCCCACGTCTTTGGTAAGTTAATTTTTAACACGGTGTATCGCCAAAATCAACGTCTCGTTTTGGTATCGAATTTGGGATTTGTTTGATGATATGGTTTTTTTTTTAATAATTGAGAATATGTGAAAGTTTTGATTGTATATATGTATAGGTAGGAGAAGTGGGAGAGCTATCAGAAATATTCCAATGGAGAGGGGAGGTAGAGAAAGGACTGCCAGATTGGGAGGAATCAGATAAGGAGCATCTTGGGGAAGAACTTTCTGATGTGTTGCTTTATCTCATAAGATTGGCTGATATTTGTGGAATCAACCTCTCTGATGCTGCAACCAAGAAGATTGTTAAGAACTCCATCAAATATCCACCCCAAATCCTCTAA

mRNA sequence

ATGGGAGGGGGCGAGCAGGTCGAAATCGATGTCGACGTTAGCCTCAAAGACCTCTCTTCGAAGCTCGAGGAGTTTGCCAAGGCCAGGAACTGGGAGAAGTATCATAGTCCTAGAAACCTTCTTCTCGCTATGGTAGGAGAAGTGGGAGAGCTATCAGAAATATTCCAATGGAGAGGGGAGGTAGAGAAAGGACTGCCAGATTGGGAGGAATCAGATAAGGAGCATCTTGGGGAAGAACTTTCTGATGTGTTGCTTTATCTCATAAGATTGGCTGATATTTGTGGAATCAACCTCTCTGATGCTGCAACCAAGAAGATTGTTAAGAACTCCATCAAATATCCACCCCAAATCCTCTAA

Coding sequence (CDS)

ATGGGAGGGGGCGAGCAGGTCGAAATCGATGTCGACGTTAGCCTCAAAGACCTCTCTTCGAAGCTCGAGGAGTTTGCCAAGGCCAGGAACTGGGAGAAGTATCATAGTCCTAGAAACCTTCTTCTCGCTATGGTAGGAGAAGTGGGAGAGCTATCAGAAATATTCCAATGGAGAGGGGAGGTAGAGAAAGGACTGCCAGATTGGGAGGAATCAGATAAGGAGCATCTTGGGGAAGAACTTTCTGATGTGTTGCTTTATCTCATAAGATTGGCTGATATTTGTGGAATCAACCTCTCTGATGCTGCAACCAAGAAGATTGTTAAGAACTCCATCAAATATCCACCCCAAATCCTCTAA

Protein sequence

MGGGEQVEIDVDVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYPPQIL
Homology
[Close]
BLAST of Lag0021093 vs. NCBI nr
Match: XP_038878506.1 (dCTP pyrophosphatase 1-like [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.6e-55
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 1   MGGGEQVEIDV-DVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRG 60
           MGGG+QV+I V D+SLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRG
Sbjct: 1   MGGGKQVDIGVDDISLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRG 60

Query: 61  EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYPPQIL 119
           EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINL DAATKK++KNSIKYPPQ+L
Sbjct: 61  EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLPDAATKKLLKNSIKYPPQLL 119

[Close]
BLAST of Lag0021093 vs. NCBI nr
Match: XP_022924788.1 (dCTP pyrophosphatase 1-like [Cucurbita moschata] >XP_022979551.1 dCTP pyrophosphatase 1-like [Cucurbita maxima] >XP_023527240.1 dCTP pyrophosphatase 1-like [Cucurbita pepo subsp. pepo] >KAG6582393.1 dCTP pyrophosphatase 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018797.1 dCTP pyrophosphatase 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0 

Query: 1   MGGGEQVEID-VDVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRG 60
           MGG EQ ++  VD+SLKDLSSKLEEFAK RNWEKYHSPRNLLLAMVGEVGELSEIFQWRG
Sbjct: 1   MGGSEQADVGVVDISLKDLSSKLEEFAKVRNWEKYHSPRNLLLAMVGEVGELSEIFQWRG 60

Query: 61  EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYPP 116
           EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINL DAATKK+VKNSIKYPP
Sbjct: 61  EVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLPDAATKKLVKNSIKYPP 116

[Close]
BLAST of Lag0021093 vs. NCBI nr
Match: XP_008438499.1 (PREDICTED: dCTP pyrophosphatase 1-like [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 8.2e-52
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0 

Query: 1   MGGGEQVEIDV---DVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQW 60
           MGGG+QV++DV   D+SLKDLS KLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQW
Sbjct: 1   MGGGKQVDVDVGVDDISLKDLSLKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQW 60

Query: 61  RGEVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYP 115
           RGEVEKGL DWEESDKEHLGEELSDVLLYLIRLADICGINL++AATKK+VKNSIKYP
Sbjct: 61  RGEVEKGLADWEESDKEHLGEELSDVLLYLIRLADICGINLANAATKKLVKNSIKYP 117

[Close]
BLAST of Lag0021093 vs. NCBI nr
Match: KAA0049237.1 (dCTP pyrophosphatase 1-like [Cucumis melo var. makuwa] >TYK17321.1 dCTP pyrophosphatase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MGGGEQVEIDVDVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE 60
           MGGG+QV++D D+SLKDLS KLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE
Sbjct: 1   MGGGKQVDVD-DISLKDLSLKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE 60

Query: 61  VEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYP 115
           VEKGL DWEESDKEHLGEELSDVLLYLIRLADICGINL++AATKK+VKNSIKYP
Sbjct: 61  VEKGLADWEESDKEHLGEELSDVLLYLIRLADICGINLANAATKKLVKNSIKYP 113

[Close]
BLAST of Lag0021093 vs. NCBI nr
Match: XP_022151675.1 (dCTP pyrophosphatase 1-like [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 4.1e-51
Identity = 104/116 (89.66%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MGGGEQVEIDVDVSLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE 60
           MGG EQ    +D+SLKDLS KL EFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE
Sbjct: 1   MGGSEQ----LDISLKDLSLKLHEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGE 60

Query: 61  VEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYPPQ 117
           VEKGLPDWEES+KEHLGEELSDVLLYLIRLADICGINLSDAA KK+VKNSIKYPPQ
Sbjct: 61  VEKGLPDWEESEKEHLGEELSDVLLYLIRLADICGINLSDAAAKKLVKNSIKYPPQ 112

[Close]
BLAST of Lag0021093 vs. ExPASy Swiss-Prot
Match: Q91VC0 (dCTP pyrophosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dctpp1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-22
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 0 

Query: 14  SLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDK 73
           +L+D+     EFA  R+WE++H PRNLLLA+VGEVGEL+E+FQW+ + E G   W+  ++
Sbjct: 30  TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDAEPGPQAWQPKER 89

Query: 74  EHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYP 115
             L EELSDVL+YL+ LA  C ++L  A   K+  N  +YP
Sbjct: 90  AALQEELSDVLIYLVALAARCHVDLPRAVISKMDTNRQRYP 130

[Close]
BLAST of Lag0021093 vs. ExPASy Swiss-Prot
Match: Q9QY93 (dCTP pyrophosphatase 1 OS=Mus musculus OX=10090 GN=Dctpp1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 14  SLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDK 73
           +L+D+     EFA  R+WE++H PRNLLLA+VGEVGEL+E+FQW+ + E G   W   ++
Sbjct: 30  TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKER 89

Query: 74  EHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYP 115
             L EELSDVL+YL+ LA  C ++L  A   K+  N  +YP
Sbjct: 90  AALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYP 130

[Close]
BLAST of Lag0021093 vs. ExPASy Swiss-Prot
Match: Q32KY6 (dCTP pyrophosphatase 1 OS=Bos taurus OX=9913 GN=DCTPP1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-21
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 14  SLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDK 73
           +L+D+     EFA  R+WE++H PRNLLLA+VGEVGEL+E+FQW+ + E G   W   ++
Sbjct: 29  TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKPDEEPGPQAWSPRER 88

Query: 74  EHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYP 115
             L EELSD+L+YL+ LA  C ++L  A   K+  N  +YP
Sbjct: 89  AALQEELSDILIYLVALAARCRVDLPQAVLCKMDTNRRRYP 129

[Close]
BLAST of Lag0021093 vs. ExPASy Swiss-Prot
Match: Q9H773 (dCTP pyrophosphatase 1 OS=Homo sapiens OX=9606 GN=DCTPP1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-21
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 14  SLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDK 73
           +L+D+     EFA  R+WE++H PRNLLLA+VGEVGEL+E+FQW+ + E G   W   ++
Sbjct: 30  TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTDGEPGPQGWSPRER 89

Query: 74  EHLGEELSDVLLYLIRLADICGINLSDAATKKIVKNSIKYPPQI 118
             L EELSDVL+YL+ LA  C ++L  A   K+  N  +YP  +
Sbjct: 90  AALQEELSDVLIYLVALAARCRVDLPLAVLSKMDINRRRYPAHL 133

The following BLAST results are available for this feature:
BLAST of Lag0021093 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878506.14.6e-5592.44dCTP pyrophosphatase 1-like [Benincasa hispida][more]
XP_022924788.17.4e-5391.38dCTP pyrophosphatase 1-like [Cucurbita moschata] >XP_022979551.1 dCTP pyrophosph... [more]
XP_008438499.18.2e-5289.74PREDICTED: dCTP pyrophosphatase 1-like [Cucumis melo][more]
KAA0049237.11.8e-5191.23dCTP pyrophosphatase 1-like [Cucumis melo var. makuwa] >TYK17321.1 dCTP pyrophos... [more]
XP_022151675.14.1e-5189.66dCTP pyrophosphatase 1-like [Momordica charantia][more]
BLAST of Lag0021093 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q91VC03.1e-2248.51dCTP pyrophosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dctpp1 PE=2 SV=1[more]
Q9QY934.1e-2248.51dCTP pyrophosphatase 1 OS=Mus musculus OX=10090 GN=Dctpp1 PE=1 SV=1[more]
Q32KY63.5e-2147.52dCTP pyrophosphatase 1 OS=Bos taurus OX=9913 GN=DCTPP1 PE=2 SV=1[more]
Q9H7733.5e-2147.12dCTP pyrophosphatase 1 OS=Homo sapiens OX=9606 GN=DCTPP1 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1080coord: 3..109
e-value: 3.4E-38
score: 131.9
NoneNo IPR availablePANTHERPTHR14552:SF2DCTP PYROPHOSPHATASE 1coord: 8..116
NoneNo IPR availablePANTHERPTHR14552FAMILY NOT NAMEDcoord: 8..116
NoneNo IPR availableSUPERFAMILY101386all-alpha NTP pyrophosphatasescoord: 13..116
IPR004518NTP pyrophosphohydrolase MazG, putative catalytic corePFAMPF03819MazGcoord: 36..110
e-value: 4.8E-8
score: 33.1
IPR025984dCTP pyrophosphatase 1PIRSFPIRSF029826UCP029826_pphcoord: 6..117
e-value: 5.0E-44
score: 146.9
IPR025984dCTP pyrophosphatase 1CDDcd11537NTP-PPase_RS21-C6_likecoord: 21..109
e-value: 5.07623E-44
score: 136.882

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021093.1Lag0021093.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006253 dCTP catabolic process
biological_process GO:0042262 DNA protection
biological_process GO:0009143 nucleoside triphosphate catabolic process
cellular_component GO:0005829 cytosol
molecular_function GO:0047840 dCTP diphosphatase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0047429 nucleoside-triphosphate diphosphatase activity