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Lag0020864 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCCTCAGCAGCCGTTCCCGCCGCTTCCGGTACCGCGGCAGCCAAATCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGCTCCGATACTGCTGCTGCAGCCGCGCCCAAGCCGAAAGTCAAAGGGGAAATGACTCGACCGACGGGGATTTTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGAGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGGTTTCTACCTCCTTTCCACTGCTATCTCTGTATTTGGTCGCATTGATTGTTGAGTAGGCGAAACCTATTGTGGTTTTTAGGGAAATGGGTTATTATCTGCGATTTTTGCTGAATGCTTTGGCCAGTGAATTGATTTTAGGGTTAATATGAAGAGAAATTTCATCTTCAAGTAAACAAACTAGTTCCTGGTGCCTACAGTTTTCCTTGCAAGTAAAATTGGGAACTCGTGTATTTCTATGGAAACGACTGTCTTTCTGGATTAAGAGTTGTAGCGTATTTCTTAGAGTGTCCGAAGATTATAGCGCACGAACAAGCAAATTTGATTGGAGTAGAATAATTGACGTTCAAATAAATAAGTTATGGGAGGTACTCGTTACAATGTTGGAGCTTATCAAAATTTTCTAATGGCAAATTGTTCTTGCGTTTTAGACTGGTAAATTCCCTATGAATCTGTTTTGAACGAAATCATCTCTCTGTAAACGCCTTTACCTTCCATTATTCTCTCTTAACTCTCAGGGGATAGAAATCAAAATCCACGAGCTATCTTGAAACATTGGAATTGAAAAATTTTCAGTGTCTAAACTTGGAGTATCTGAAGCTTTTATTCGTCTACCCCCCCCCCCCCCCCCAACGAGAATACTTAACTCTTGAAAGATTGAAACATTTGATCAAGGGGTTGTATAGTATTACTTTTATACTTTATAAATGTTGAAATTGATATTATAGTTTCAGAAATATTTGGTACTGATCACTGAGATATCATTTTTTTTTTTTTTTTTTTGAGAAGGGATCACTGAGATATCTGAGATGTGATTCCCTGTCTTCTGTAATGTATTTATGGGCATAGCAATTAAGCCAGGGTTAACATAAGCCTGAGGATATTATTCTTTTGGATTAGAGTCCTTTCTTGTAGTTAATCGTGGACTCCTTTTGTGTGCTTATTTTTTGTATACCCTTGTACATTCTTTCATTTTTCTCAATGAAAACTCGGTTTCTTATAGAAAAGAAAAAAAACATAAGCATGAAAGATATTAAATATTATACAAGTTTCTTCCCTATGAAATATTGGAGGATTGTCTGGTGGAATTGGTTCTGCTGCACGCAACCTGTAGTTTTCAAAGAAAAAAAAGGAACAGCCTAGGCCTCAAGAGCTCTGTAATGCATTTTTAGTTGATAATTAGGGGGTTTCTGTGATCCAAGCTATGGCATAATCAGATATTTCATTGTCTTTGCCTGCAGAATCCTGCTAACAAAAGAGAGATCTTCTGCGACGATAAACTCAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATTGGAAAATTGCTCGCTCGCCATTTCGTGAAGAACTGA ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCCTCAGCAGCCGTTCCCGCCGCTTCCGGTACCGCGGCAGCCAAATCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGCTCCGATACTGCTGCTGCAGCCGCGCCCAAGCCGAAAGTCAAAGGGGAAATGACTCGACCGACGGGGATTTTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGAGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAATCCTGCTAACAAAAGAGAGATCTTCTGCGACGATAAACTCAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATTGGAAAATTGCTCGCTCGCCATTTCGTGAAGAACTGA ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCCTCAGCAGCCGTTCCCGCCGCTTCCGGTACCGCGGCAGCCAAATCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGCTCCGATACTGCTGCTGCAGCCGCGCCCAAGCCGAAAGTCAAAGGGGAAATGACTCGACCGACGGGGATTTTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGAGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAATCCTGCTAACAAAAGAGAGATCTTCTGCGACGATAAACTCAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATTGGAAAATTGCTCGCTCGCCATTTCGTGAAGAACTGA MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN Homology
BLAST of Lag0020864 vs. NCBI nr
Match: XP_022146901.1 (upstream activation factor subunit spp27-like [Momordica charantia]) HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62 Identity = 138/157 (87.90%), Postives = 142/157 (90.45%), Query Frame = 0
BLAST of Lag0020864 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima]) HSP 1 Score: 244.6 bits (623), Expect = 5.6e-61 Identity = 135/157 (85.99%), Postives = 137/157 (87.26%), Query Frame = 0
BLAST of Lag0020864 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata]) HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57 Identity = 123/153 (80.39%), Postives = 133/153 (86.93%), Query Frame = 0
BLAST of Lag0020864 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida]) HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57 Identity = 126/154 (81.82%), Postives = 133/154 (86.36%), Query Frame = 0
BLAST of Lag0020864 vs. NCBI nr
Match: KAG6582547.1 (hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018930.1 UAF30 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57 Identity = 123/153 (80.39%), Postives = 133/153 (86.93%), Query Frame = 0
BLAST of Lag0020864 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11 Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Lag0020864 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.4e-11 Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 0
BLAST of Lag0020864 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10 Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 0
BLAST of Lag0020864 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07 Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 0
BLAST of Lag0020864 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.0e-05 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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