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Lag0020789 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCTTTACTCATCGAACAATTAATGGACCAGGAAGTTATGAATCTTTTTGGAGGAGAGTTGCATAGAGTTGCGTTGTGCCTCTGCCTTGGAAAGGTACATTTACCTTGTGACTTCAGTGTTCCTGTCAATTAATACCTTTCTAATATTTTCGGCAAGCTGTATTAGCAGATTAGTTTCATTTTTGCCTATGCATTTGTGGTTAGGGTCAAACATATCTATCCATATGTCTGTAGCTTTATATTGGCTCGGCCGCGAGTATAGTGGCTGGTAGGCTGCGAAAACCGCCGACAAGGAAACTGTGTGCGCCTCGACTTTTCCCTTCTTCTCTTGTTCTCTCCGACCGCTGTCTCCTCCCTCGTTTGCCTGTGATCGCGAAACTGACGCCGCCTGGGGGTTTTGCTTACCGACGACCTGCTGCTACGAAGTCTCGCCGCTTTCGCATACCGTAA ATGAAGCCTTTACTCATCGAACAATTAATGGACCAGGAAGTTATGAATCTTTTTGGAGGAGAGTTGCATAGAGTTGCGTTGTGCCTCTGCCTTGGAAAGCTTTATATTGGCTCGGCCGCGAGTATAGTGGCTGGTAGGCTGCGAAAACCGCCGACAAGGAAACTGTGTGCGCCTCGACTTTTCCCTTCTTCTCTTGTTCTCTCCGACCGCTGTCTCCTCCCTCGTTTGCCTGTGATCGCGAAACTGACGCCGCCTGGGGGTTTTGCTTACCGACGACCTGCTGCTACGAAGTCTCGCCGCTTTCGCATACCGTAA ATGAAGCCTTTACTCATCGAACAATTAATGGACCAGGAAGTTATGAATCTTTTTGGAGGAGAGTTGCATAGAGTTGCGTTGTGCCTCTGCCTTGGAAAGCTTTATATTGGCTCGGCCGCGAGTATAGTGGCTGGTAGGCTGCGAAAACCGCCGACAAGGAAACTGTGTGCGCCTCGACTTTTCCCTTCTTCTCTTGTTCTCTCCGACCGCTGTCTCCTCCCTCGTTTGCCTGTGATCGCGAAACTGACGCCGCCTGGGGGTTTTGCTTACCGACGACCTGCTGCTACGAAGTCTCGCCGCTTTCGCATACCGTAA MKPLLIEQLMDQEVMNLFGGELHRVALCLCLGKLYIGSAASIVAGRLRKPPTRKLCAPRLFPSSLVLSDRCLLPRLPVIAKLTPPGGFAYRRPAATKSRRFRIP Homology
BLAST of Lag0020789 vs. NCBI nr
Match: KAF9690372.1 (hypothetical protein SADUNF_Sadunf01G0188900 [Salix dunnii]) HSP 1 Score: 68.9 bits (167), Expect = 2.9e-08 Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0
BLAST of Lag0020789 vs. NCBI nr
Match: KAB5574559.1 (hypothetical protein DKX38_001753 [Salix brachista]) HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0
BLAST of Lag0020789 vs. NCBI nr
Match: KAB5534362.1 (hypothetical protein DKX38_017448 [Salix brachista]) HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0
BLAST of Lag0020789 vs. NCBI nr
Match: GFY93859.1 (RNAse l inhibitor protein 2 [Actinidia rufa]) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07 Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of Lag0020789 vs. NCBI nr
Match: EXB80294.1 (ABC transporter E family member 2 [Morus notabilis]) HSP 1 Score: 65.5 bits (158), Expect = 3.2e-07 Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 0
BLAST of Lag0020789 vs. ExPASy Swiss-Prot
Match: Q8LPJ4 (ABC transporter E family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCE2 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 8.7e-08 Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of Lag0020789 vs. ExPASy Swiss-Prot
Match: Q9VSS1 (Protein Pixie OS=Drosophila melanogaster OX=7227 GN=pix PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06 Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0
BLAST of Lag0020789 vs. ExPASy Swiss-Prot
Match: P61221 (ATP-binding cassette sub-family E member 1 OS=Homo sapiens OX=9606 GN=ABCE1 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05 Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Lag0020789 vs. ExPASy Swiss-Prot
Match: P61222 (ATP-binding cassette sub-family E member 1 OS=Mus musculus OX=10090 GN=Abce1 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05 Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Lag0020789 vs. ExPASy Swiss-Prot
Match: O60102 (Translation initiation factor rli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rli1 PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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