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Lag0020740 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAAAATGGCAAGTGGTGCAGAAGAATGTGGCTATAAAAACCCTCCATAGAAGAAACGCACCTGACAACACATCTCATTCCCCCATTCGGGCCTTCCGCCGCCGCCTCTCCACGGCGTCGCCACCGTCCTCCGGCCGTCCTCCATCTTTTCCGGCCACCACTACTATTCTCTACAGTCTCCATTCCAAATCAAATCTCCACTTCTCACTCTATAAATACACAAATTTCTTCTCATCGATGAACCGCCGCATAATCCCGTCTCTCTTTGCTAATCCACAATCGGAAACGGAATCGGCGTCGGATTCCTCTTTCCCTCCGACCGCCATGGGCTATCCCGTAGGCTACGCCGACGTTTTTCTCCCGAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGCTACATTCGAAGCCTCATCGTTTCGCTCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTGTGGCCTGAAAATCCGACCTCGATCTTCCACGATCGATCCGTATCGCCGGTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGCCGCCGGATTTCCGCCGGAATGTTGCGCCGTCTGTCTCTGTGAGTTTCAGGACGACGAGGAGGTCAGGTTTTTGAAGAATTGCAAACACATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCGTTGGTGGATTTTCCCGGCTGTTCTGAGTTTTCCGGTGACTAG ATGAGAAAATGGCAAGTGGTGCAGAAGAATGTGGCTATAAAAACCCTCCATAGAAGAAACGCACCTGACAACACATCTCATTCCCCCATTCGGGCCTTCCGCCGCCGCCTCTCCACGGCGTCGCCACCGTCCTCCGGCCGTCCTCCATCTTTTCCGGCCACCACTACTATTCTCTACAGTCTCCATTCCAAATCAAATCTCCACTTCTCACTCTATAAATACACAAATTTCTTCTCATCGATGAACCGCCGCATAATCCCGTCTCTCTTTGCTAATCCACAATCGGAAACGGAATCGGCGTCGGATTCCTCTTTCCCTCCGACCGCCATGGGCTATCCCGTAGGCTACGCCGACGTTTTTCTCCCGAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGCTACATTCGAAGCCTCATCGTTTCGCTCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTGTGGCCTGAAAATCCGACCTCGATCTTCCACGATCGATCCGTATCGCCGGTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGCCGCCGGATTTCCGCCGGAATGTTGCGCCGTCTGTCTCTGTGAGTTTCAGGACGACGAGGAGGTCAGGTTTTTGAAGAATTGCAAACACATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCGTTGGTGGATTTTCCCGGCTGTTCTGAGTTTTCCGGTGACTAG ATGAGAAAATGGCAAGTGGTGCAGAAGAATGTGGCTATAAAAACCCTCCATAGAAGAAACGCACCTGACAACACATCTCATTCCCCCATTCGGGCCTTCCGCCGCCGCCTCTCCACGGCGTCGCCACCGTCCTCCGGCCGTCCTCCATCTTTTCCGGCCACCACTACTATTCTCTACAGTCTCCATTCCAAATCAAATCTCCACTTCTCACTCTATAAATACACAAATTTCTTCTCATCGATGAACCGCCGCATAATCCCGTCTCTCTTTGCTAATCCACAATCGGAAACGGAATCGGCGTCGGATTCCTCTTTCCCTCCGACCGCCATGGGCTATCCCGTAGGCTACGCCGACGTTTTTCTCCCGAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGCTACATTCGAAGCCTCATCGTTTCGCTCTTCCGATTTCTAGGGCTTTCCGATTTTCTCGAATCCGGCGTCGTGTGGCCTGAAAATCCGACCTCGATCTTCCACGATCGATCCGTATCGCCGGTCCTCATCGACGAATTCGTCCCCGTCGTCAAATTCTCCGACATTGCCGCCGGATTTCCGCCGGAATGTTGCGCCGTCTGTCTCTGTGAGTTTCAGGACGACGAGGAGGTCAGGTTTTTGAAGAATTGCAAACACATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTCTGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCGTTGGTGGATTTTCCCGGCTGTTCTGAGTTTTCCGGTGACTAG MRKWQVVQKNVAIKTLHRRNAPDNTSHSPIRAFRRRLSTASPPSSGRPPSFPATTTILYSLHSKSNLHFSLYKYTNFFSSMNRRIIPSLFANPQSETESASDSSFPPTAMGYPVGYADVFLPNAFLHLLFFLGYIRSLIVSLFRFLGLSDFLESGVVWPENPTSIFHDRSVSPVLIDEFVPVVKFSDIAAGFPPECCAVCLCEFQDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLVDFPGCSEFSGD Homology
BLAST of Lag0020740 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 328.6 bits (841), Expect = 5.1e-86 Identity = 160/186 (86.02%), Postives = 168/186 (90.32%), Query Frame = 0
BLAST of Lag0020740 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 328.2 bits (840), Expect = 6.6e-86 Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 0
BLAST of Lag0020740 vs. NCBI nr
Match: KGN56500.1 (hypothetical protein Csa_010889 [Cucumis sativus]) HSP 1 Score: 319.3 bits (817), Expect = 3.1e-83 Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Lag0020740 vs. NCBI nr
Match: KAG6582623.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 313.2 bits (801), Expect = 2.2e-81 Identity = 152/188 (80.85%), Postives = 162/188 (86.17%), Query Frame = 0
BLAST of Lag0020740 vs. NCBI nr
Match: XP_023526936.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 307.4 bits (786), Expect = 1.2e-79 Identity = 151/188 (80.32%), Postives = 159/188 (84.57%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.8e-38 Identity = 78/144 (54.17%), Postives = 103/144 (71.53%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.9e-23 Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.7e-20 Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12 Identity = 57/192 (29.69%), Postives = 89/192 (46.35%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.5e-11 Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 2.5e-86 Identity = 160/186 (86.02%), Postives = 168/186 (90.32%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 3.2e-86 Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 1.5e-83 Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy TrEMBL
Match: A0A6J1IWS3 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111479288 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 6.5e-71 Identity = 132/159 (83.02%), Postives = 137/159 (86.16%), Query Frame = 0
BLAST of Lag0020740 vs. ExPASy TrEMBL
Match: A0A6J1E8G9 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111431816 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 1.1e-70 Identity = 131/159 (82.39%), Postives = 138/159 (86.79%), Query Frame = 0
BLAST of Lag0020740 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 ) HSP 1 Score: 161.0 bits (406), Expect = 1.3e-39 Identity = 78/144 (54.17%), Postives = 103/144 (71.53%), Query Frame = 0
BLAST of Lag0020740 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein ) HSP 1 Score: 143.7 bits (361), Expect = 2.2e-34 Identity = 71/141 (50.35%), Postives = 99/141 (70.21%), Query Frame = 0
BLAST of Lag0020740 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein ) HSP 1 Score: 138.7 bits (348), Expect = 7.0e-33 Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 0
BLAST of Lag0020740 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B ) HSP 1 Score: 109.8 bits (273), Expect = 3.5e-24 Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 0
BLAST of Lag0020740 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A ) HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21 Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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