Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTCACCAAGCTCGGCCTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCTCCCGCAACCTCCACCATCCCCCTCCCTCCAGGCCGCCTCCCTCGCGCTCCGATGGCGGAATCATTCTCCCCCAGATCATCTTTGTCGCCGAGGACGACGCCGCCACAGATCGCGACGACGACAACGGCGTCCTCGGTCTCGATCAGGCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTCTGTTCTATCTGTCTCTGTGAGTATAAGGACGCCGAGATGCTCAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTCCCGCTCTCGCAATACATGGCGGATCGGAGAAGGAGATGA
mRNA sequence
ATGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTCACCAAGCTCGGCCTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCTCCCGCAACCTCCACCATCCCCCTCCCTCCAGGCCGCCTCCCTCGCGCTCCGATGGCGGAATCATTCTCCCCCAGATCATCTTTGTCGCCGAGGACGACGCCGCCACAGATCGCGACGACGACAACGGCGTCCTCGGTCTCGATCAGGCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTCTGTTCTATCTGTCTCTGTGAGTATAAGGACGCCGAGATGCTCAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTCCCGCTCTCGCAATACATGGCGGATCGGAGAAGGAGATGA
Coding sequence (CDS)
ATGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTCACCAAGCTCGGCCTCGGCTACGCCATTGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCTCCCGCAACCTCCACCATCCCCCTCCCTCCAGGCCGCCTCCCTCGCGCTCCGATGGCGGAATCATTCTCCCCCAGATCATCTTTGTCGCCGAGGACGACGCCGCCACAGATCGCGACGACGACAACGGCGTCCTCGGTCTCGATCAGGCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGGGCTAATTGCGTCTGTTCTATCTGTCTCTGTGAGTATAAGGACGCCGAGATGCTCAGGATGATGCCTGAGTGTAGACATTACTTTCATCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTCCCGCTCTCGCAATACATGGCGGATCGGAGAAGGAGATGA
Protein sequence
MSSSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPPPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Homology
BLAST of Lag0020712 vs. NCBI nr
Match:
XP_022933391.1 (RING-H2 finger protein ATL67-like [Cucurbita moschata])
HSP 1 Score: 342.0 bits (876), Expect = 3.3e-90
Identity = 175/193 (90.67%), Postives = 181/193 (93.78%), Query Frame = 0
Query: 1 MSSSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPS 60
MSSSS++SSS+ SF KLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSR+ L S
Sbjct: 1 MSSSSTASSSNYSFAKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRL---SSS 60
Query: 61 RPPPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGAN 120
RPPPSRSD GIILPQIIFVAEDD A DRDDDNGV+GLDQAVINSYPKFPFSKDKSMAGAN
Sbjct: 61 RPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGAN 120
Query: 121 CVCSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 180
CVCSICLCEYK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV
Sbjct: 121 CVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 180
Query: 181 VPLSQYMADRRRR 194
VPLSQYMADRRRR
Sbjct: 181 VPLSQYMADRRRR 190
BLAST of Lag0020712 vs. NCBI nr
Match:
XP_023540092.1 (RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 340.5 bits (872), Expect = 9.5e-90
Identity = 174/193 (90.16%), Postives = 180/193 (93.26%), Query Frame = 0
Query: 1 MSSSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPS 60
MSSSS++SSS+ SF KLG GYAIAIALAFLVLLSALLLAFYVCCRASRSR+ L S
Sbjct: 44 MSSSSTASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRL---SSS 103
Query: 61 RPPPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGAN 120
RPPPSRSD GIILPQIIFVAEDD A DRDDDNGV+GLDQAVINSYPKFPFSKDKSMAGAN
Sbjct: 104 RPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGAN 163
Query: 121 CVCSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 180
CVCSICLCEYK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV
Sbjct: 164 CVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 223
Query: 181 VPLSQYMADRRRR 194
VPLSQYMADRRRR
Sbjct: 224 VPLSQYMADRRRR 233
BLAST of Lag0020712 vs. NCBI nr
Match:
KAG6597116.1 (RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028578.1 RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89
Identity = 173/193 (89.64%), Postives = 179/193 (92.75%), Query Frame = 0
Query: 1 MSSSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPS 60
MSSSS++SSS+ S KLG GYAIAIALAFLVLLSALLLAFYVCCRASRSR+ L S
Sbjct: 1 MSSSSTASSSNYSIAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRL---SSS 60
Query: 61 RPPPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGAN 120
RPPPSRSD GIILPQIIFVAEDD A DRDDDNGV+GLDQAVINSYPKFPFSKDKSMAGAN
Sbjct: 61 RPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGAN 120
Query: 121 CVCSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 180
CVCSICLCEYK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV
Sbjct: 121 CVCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEV 180
Query: 181 VPLSQYMADRRRR 194
VPLSQYMADRRRR
Sbjct: 181 VPLSQYMADRRRR 190
BLAST of Lag0020712 vs. NCBI nr
Match:
XP_022974673.1 (RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 RING-H2 finger protein ATL67-like isoform X3 [Cucurbita maxima] >XP_022975578.1 RING-H2 finger protein ATL67-like [Cucurbita maxima])
HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 172/191 (90.05%), Postives = 178/191 (93.19%), Query Frame = 0
Query: 3 SSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRP 62
SSS++SSS+ SF KLG GYAIAIALAFLVLLSALLLAFYVCCRASRSR+ L SRP
Sbjct: 2 SSSTASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRL---SSSRP 61
Query: 63 PPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGANCV 122
PPSRSD GIILPQIIFVAEDD A DRDDDNGV+GLDQAVINSYPKFPFSKDKSMAGANCV
Sbjct: 62 PPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCV 121
Query: 123 CSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 182
CSICLCEYK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 122 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
Query: 183 LSQYMADRRRR 194
LSQYMADRRRR
Sbjct: 182 LSQYMADRRRR 189
BLAST of Lag0020712 vs. NCBI nr
Match:
XP_022974672.1 (RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 172/191 (90.05%), Postives = 178/191 (93.19%), Query Frame = 0
Query: 3 SSSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRP 62
SSS++SSS+ SF KLG GYAIAIALAFLVLLSALLLAFYVCCRASRSR+ L SRP
Sbjct: 42 SSSTASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRL---SSSRP 101
Query: 63 PPSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGANCV 122
PPSRSD GIILPQIIFVAEDD A DRDDDNGV+GLDQAVINSYPKFPFSKDKSMAGANCV
Sbjct: 102 PPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCV 161
Query: 123 CSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 182
CSICLCEYK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 162 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 221
Query: 183 LSQYMADRRRR 194
LSQYMADRRRR
Sbjct: 222 LSQYMADRRRR 229
BLAST of Lag0020712 vs. ExPASy Swiss-Prot
Match:
O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 3.4e-58
Identity = 125/200 (62.50%), Postives = 143/200 (71.50%), Query Frame = 0
Query: 4 SSSSSSSSSSFTKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPP 63
S + + S T LG GY+IAIAL FLVLLS +LL+ Y+CCR SR R+ +
Sbjct: 20 SPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVE-------S 79
Query: 64 PSRSDGGIILPQIIFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMA------ 123
G +ILP+IIFVAE+D D + + V+GLDQAVINSYPKF FSKD S A
Sbjct: 80 TGDRGGSVILPRIIFVAEED-NEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFG 139
Query: 124 -GANCVCSICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TP 183
G + CSICLCEYK+AEMLRMMPEC+HYFHLCC+DAWLKLNGSCPVCRNSPLP TP
Sbjct: 140 GGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTP 199
Query: 184 LSTPLQEVVPLSQYMADRRR 193
LSTPL EVVPLSQY ADRRR
Sbjct: 200 LSTPLSEVVPLSQYAADRRR 211
BLAST of Lag0020712 vs. ExPASy Swiss-Prot
Match:
Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 8.7e-54
Identity = 117/193 (60.62%), Postives = 136/193 (70.47%), Query Frame = 0
Query: 15 TKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPPPSRSDGGIILP 74
T LGLGY+IAIAL FLVL+S ++L+ Y+CCRASR R + S SD G+I+P
Sbjct: 22 TSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFS--ASAANANANASFSDRGVIVP 81
Query: 75 QIIFVAEDDAATDRDDDNGVL-GLDQAVINSYPKFPFSKDKSMA----------GANCVC 134
+IIFVAEDD D + N V+ GLD +VINSYPKF F+KD + G C
Sbjct: 82 RIIFVAEDD---DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTC 141
Query: 135 SICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQE 193
SICLCEY + EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP TP STPL E
Sbjct: 142 SICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSE 201
BLAST of Lag0020712 vs. ExPASy Swiss-Prot
Match:
Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 73/174 (41.95%), Postives = 94/174 (54.02%), Query Frame = 0
Query: 18 GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPPPSRSDGGIILPQII 77
G Y I +++ L+L++ + L Y C R S S P + D I
Sbjct: 63 GFRYGIGVSIGVLLLITTITLTSYYCTRNQLS----------SSPSQTNQDSTRIHHHHH 122
Query: 78 FVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGANCVCSICLCEYKDAEMLR 137
V D V GLD+ I SYPK +S+ K A+C C+ICL +YK +LR
Sbjct: 123 HVIID----------VVPGLDEDTIQSYPKILYSEAKGPTTASC-CAICLGDYKGKHLLR 182
Query: 138 MMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 192
+P+C H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+ +A R
Sbjct: 183 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215
BLAST of Lag0020712 vs. ExPASy Swiss-Prot
Match:
Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 5.9e-26
Identity = 68/175 (38.86%), Postives = 100/175 (57.14%), Query Frame = 0
Query: 18 GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPPPSRSDGGIILPQII 77
GL Y I +++ L+L++ + L Y C R+ S S P +R S+G + Q
Sbjct: 22 GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTT--TPRTRRRQRESNGTLPPGQER 81
Query: 78 FVAEDDAATDRDDDNGVLGLDQAVINSYPKFP-------FSKDKSMAGANCVCSICLCEY 137
F EDD + + VLGL + VI +PK P +S K + +C CSICL +Y
Sbjct: 82 FDFEDDESDTVVVE--VLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSC-CSICLADY 141
Query: 138 KDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 186
K +M+R++P+C H FH C+D WL+L+ +CPVCR SPLP+P TP+ +VVP S+
Sbjct: 142 KKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191
BLAST of Lag0020712 vs. ExPASy Swiss-Prot
Match:
Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 7.7e-26
Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 0
Query: 17 LGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRSRNLHHPPPSRPPPSRSDGGIILPQI 76
+GLGY IAIA++ LVL+S ++LA Y+C R S+S R+ + SD + LP
Sbjct: 11 VGLGYGIAIAVSILVLISFIMLASYICIR-SKSTGRD----------EATSDVVLDLP-- 70
Query: 77 IFVAEDDAATDRDDDNGVLGLDQAVINSYPKFPFSKDKSMAGA-NCVCSICLCEYKDAEM 136
AA + LGLD+ VI SYP+ + + N CSICLC+Y+ E
Sbjct: 71 -----SPAAEVK------LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREP 130
Query: 137 LRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 185
+R +PEC H FH C+D WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 131 VRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022933391.1 | 3.3e-90 | 90.67 | RING-H2 finger protein ATL67-like [Cucurbita moschata] | [more] |
XP_023540092.1 | 9.5e-90 | 90.16 | RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo] | [more] |
KAG6597116.1 | 4.7e-89 | 89.64 | RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >K... | [more] |
XP_022974673.1 | 6.1e-89 | 90.05 | RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 ... | [more] |
XP_022974672.1 | 6.1e-89 | 90.05 | RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
O82353 | 3.4e-58 | 62.50 | RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1 | [more] |
Q9M313 | 8.7e-54 | 60.62 | RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1 | [more] |
Q8RX29 | 1.1e-27 | 41.95 | RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1 | [more] |
Q9FG21 | 5.9e-26 | 38.86 | Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P... | [more] |
Q9FL42 | 7.7e-26 | 41.42 | Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P... | [more] |