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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG mRNA sequence ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG Coding sequence (CDS) ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG Protein sequence MCSVIKMEGKPVNPRHVIVLFTVDDATLSSSFFVHLPSSSDSMTDHSNIMAPLLIVIVDRPKTDSSSNSCCRGKWQSRREIRTSQSETASANLFRQTMPIPPPLINSPNRPSEKSDRHEFADLNRRRHQINQSRPFLWLSIRRAIGSFLLIS
Homology
BLAST of Lag0020685 vs. NCBI nr
Match: KAG6582657.1 (hypothetical protein SDJN03_22659, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04 Identity = 46/103 (44.66%), Postives = 57/103 (55.34%), Query Frame = 0 Query: 16 HVIVLFTVDD-----ATLSSSFFVHLPSSSDSMTD-HSNIMAPLLIVIVDRPKTDSSSNS 75 HVIVL T+DD ++ SSS SSDSMTD HS+I+A + IVIVD PKT+ S S Sbjct: 8 HVIVLLTIDDSFFFSSSSSSSSSSSSSWSSDSMTDHHSDIVASMFIVIVDPPKTECSRQS 67
Query: 76 CCR--GK--WQSRREIRTSQSETASANLFRQTMPIPPPLINSP 109 CR GK +S RT + + IP P+INSP Sbjct: 68 RCRRNGKVGAKSADRNRTQLAPSCFVRFIFAVAAIPRPVINSP 110
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6582657.1 | 1.3e-04 | 44.66 | hypothetical protein SDJN03_22659, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 97..118 |
Relationships
The following mRNA feature(s) are a part of this gene:
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