Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGCAACGTTTCTCTTCTCTCCCCCGCCCTGGCACTGCCTCACGACCTGAAGTTCAACCGACGACGACAGAACCAGAAGTTTTTCCCTCTGCTTCCACGACCACCAATGTTTTTCAAACTTCCCCGATTAGAGAAAAATCTCCTCAGGTCCCATCTCCGGTGAGGAAATTACCGTCGCCACCTTCTTCTCCAAAATATAGGGGTGTCGCCACCACTTCGCCTCGCAAGCCACTATCTCCAACTCCAACGTACAACCGTTACGACGGTGAACGGCGGACCAGTGCCACGACATCTCCCAAAACCTTCAAGCCCACTTACACCTCTCCACCACGATCACCACCCAAGCAAAAATACTCCACCACCACCACTGCCGCACCACTCTCTCCTCTGACTCTACCACGCTCAGAGGTGAGACATGAACTTGAGCACATGGTTCGATCGAGGAGCCCACCAGAGGTTTGTTAAATCATCACTAAATTCAATAGGTTAAACTTATAGATTCAAGCGTATGTATATATATATATTTATGAACAAAACTTACTGCATACCGGTATGTAGGGATCTCCCTAGATATTTCATTAAAATCCTGACAACTAAGAAAGAGAAAGGTAGAAAATGAGAAAACTTTTTTTTTATCTCTCCTAGTTGTCAACATTTTAATAACCGCTATGCAACCAAAAATTTTTTTTTTCTATATTTACAACACTTTCTCTCACTTTTCTTAAGAATAAGTTAATCATATTTTATGTGTGGTTTAGAAATGGAAATTCCAACCTCCAACCGTTAGAAAAGAACATCGTTAAATCTTTTATACATATTCTTAAGCAGGTGGAACGCAAGACAATCTACCAGAAGACGGCGGAGAAGGCGGTGAAATCCGACCACCGAGCGACGGAGTACAGCGCCGGGAAACCCCACCAAAAGCATCATCAGCAGCAGCAGCTGCAGAGTGATGTTATAAACATCAAAGGAGAGAATGTAGGAGCCGTGATGCACATAACTCAATCCTCGGATGGGACAGAAATTCAGAAGAGAAAGCCAGGCGTTGGTCACAGCAACGAAGGCGATGAGAAAACAAACAAATCATCGAGCTCCAACATGCCAGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAATTCCATTCTGTACAATTCCTCGTTAACCCACCGTGATCCTGGCCTGCACCTTGCTTACTCCAAGAACAAGCCCACCCATGGCGATTCTCTTCATGATTCTTCCAGGCACTAA
mRNA sequence
ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGCAACGTTTCTCTTCTCTCCCCCGCCCTGGCACTGCCTCACGACCTGAAGTTCAACCGACGACGACAGAACCAGAAGTTTTTCCCTCTGCTTCCACGACCACCAATGTTTTTCAAACTTCCCCGATTAGAGAAAAATCTCCTCAGGTCCCATCTCCGGTGAGGAAATTACCGTCGCCACCTTCTTCTCCAAAATATAGGGGTGTCGCCACCACTTCGCCTCGCAAGCCACTATCTCCAACTCCAACGTACAACCGTTACGACGGTGAACGGCGGACCAGTGCCACGACATCTCCCAAAACCTTCAAGCCCACTTACACCTCTCCACCACGATCACCACCCAAGCAAAAATACTCCACCACCACCACTGCCGCACCACTCTCTCCTCTGACTCTACCACGCTCAGAGGTGAGACATGAACTTGAGCACATGGTTCGATCGAGGAGCCCACCAGAGGTGGAACGCAAGACAATCTACCAGAAGACGGCGGAGAAGGCGGTGAAATCCGACCACCGAGCGACGGAGTACAGCGCCGGGAAACCCCACCAAAAGCATCATCAGCAGCAGCAGCTGCAGAGTGATGTTATAAACATCAAAGGAGAGAATGTAGGAGCCGTGATGCACATAACTCAATCCTCGGATGGGACAGAAATTCAGAAGAGAAAGCCAGGCGTTGGTCACAGCAACGAAGGCGATGAGAAAACAAACAAATCATCGAGCTCCAACATGCCAGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAATTCCATTCTGTACAATTCCTCGTTAACCCACCGTGATCCTGGCCTGCACCTTGCTTACTCCAAGAACAAGCCCACCCATGGCGATTCTCTTCATGATTCTTCCAGGCACTAA
Coding sequence (CDS)
ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGCAACGTTTCTCTTCTCTCCCCCGCCCTGGCACTGCCTCACGACCTGAAGTTCAACCGACGACGACAGAACCAGAAGTTTTTCCCTCTGCTTCCACGACCACCAATGTTTTTCAAACTTCCCCGATTAGAGAAAAATCTCCTCAGGTCCCATCTCCGGTGAGGAAATTACCGTCGCCACCTTCTTCTCCAAAATATAGGGGTGTCGCCACCACTTCGCCTCGCAAGCCACTATCTCCAACTCCAACGTACAACCGTTACGACGGTGAACGGCGGACCAGTGCCACGACATCTCCCAAAACCTTCAAGCCCACTTACACCTCTCCACCACGATCACCACCCAAGCAAAAATACTCCACCACCACCACTGCCGCACCACTCTCTCCTCTGACTCTACCACGCTCAGAGGTGAGACATGAACTTGAGCACATGGTTCGATCGAGGAGCCCACCAGAGGTGGAACGCAAGACAATCTACCAGAAGACGGCGGAGAAGGCGGTGAAATCCGACCACCGAGCGACGGAGTACAGCGCCGGGAAACCCCACCAAAAGCATCATCAGCAGCAGCAGCTGCAGAGTGATGTTATAAACATCAAAGGAGAGAATGTAGGAGCCGTGATGCACATAACTCAATCCTCGGATGGGACAGAAATTCAGAAGAGAAAGCCAGGCGTTGGTCACAGCAACGAAGGCGATGAGAAAACAAACAAATCATCGAGCTCCAACATGCCAGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAATTCCATTCTGTACAATTCCTCGTTAACCCACCGTGATCCTGGCCTGCACCTTGCTTACTCCAAGAACAAGCCCACCCATGGCGATTCTCTTCATGATTCTTCCAGGCACTAA
Protein sequence
MANLPRFGRTWQRFSSLPRPGTASRPEVQPTTTEPEVFPSASTTTNVFQTSPIREKSPQVPSPVRKLPSPPSSPKYRGVATTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYTSPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTIYQKTAEKAVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGVGHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHGDSLHDSSRH
Homology
BLAST of Lag0020624 vs. NCBI nr
Match:
KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 402.5 bits (1033), Expect = 3.2e-108
Identity = 228/309 (73.79%), Postives = 257/309 (83.17%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRPGTA R +V P T+EPEV+PSA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E MVR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. NCBI nr
Match:
XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])
HSP 1 Score: 401.0 bits (1029), Expect = 9.3e-108
Identity = 227/309 (73.46%), Postives = 257/309 (83.17%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRPGTA R +V P T+EPEV+PSA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E +VR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. NCBI nr
Match:
XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 401.0 bits (1029), Expect = 9.3e-108
Identity = 227/309 (73.46%), Postives = 255/309 (82.52%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRPGTA R +V P +EPEV+P T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEPEVYPPPPRTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++PSPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERRTSA SPKTFK TYT
Sbjct: 61 RIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E MVR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. NCBI nr
Match:
XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])
HSP 1 Score: 397.9 bits (1021), Expect = 7.9e-107
Identity = 227/309 (73.46%), Postives = 255/309 (82.52%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRP TA R +V P T+EPEVF SA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E MVR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. NCBI nr
Match:
XP_038904572.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida])
HSP 1 Score: 394.8 bits (1013), Expect = 6.7e-106
Identity = 230/312 (73.72%), Postives = 250/312 (80.13%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQPTTTEPEVFPSASTTTNVFQTSPIREKSPQV 60
M+NLPRFGRTW RFSSLPRP +A RPE+QP TT E P TT NV QTSPI+E+SP++
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPVSAPRPEIQPLTTATE--PEVPTTANVLQTSPIKERSPRI 60
Query: 61 PSPVRKLPSPPSSPKYRGVATT-SPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYTSP 120
PSPV K PSPPSSPKY GVATT SPRKPLSPTP YNRYDGERRTSATTSPK FKPT SP
Sbjct: 61 PSPVAKFPSPPSSPKY-GVATTISPRKPLSPTPAYNRYDGERRTSATTSPKAFKPTPVSP 120
Query: 121 PRSPPKQKYST---TTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVE-RKTIYQKTAEK 180
P SPPK K+ST TAAPLSPL LPRSEVR E EH VR RSPPEVE +K +YQ T EK
Sbjct: 121 PLSPPKPKHSTLAAIATAAPLSPLALPRSEVRREPEHTVRPRSPPEVEQKKVLYQTTMEK 180
Query: 181 AVKSDHRATEYSAGKPHQKH---HQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRK 240
K++HR EY +GKP+QKH QQQQLQSDVINIKGENVGAVMHITQSSDG+EI K+K
Sbjct: 181 TTKTEHRQPEYISGKPNQKHQHNQQQQQLQSDVINIKGENVGAVMHITQSSDGSEIVKKK 240
Query: 241 PGVGHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKP 300
P + E +EK NK S+ N P K FMNSNFQGVNNSILYNSSL+HRDPGLHLAYSK KP
Sbjct: 241 P----NKENEEKANK-STPNFPAKQFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSK-KP 300
Query: 301 THGDSLHDSSRH 305
HGDSLHD SRH
Sbjct: 301 NHGDSLHD-SRH 302
BLAST of Lag0020624 vs. ExPASy TrEMBL
Match:
A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)
HSP 1 Score: 401.0 bits (1029), Expect = 4.5e-108
Identity = 227/309 (73.46%), Postives = 257/309 (83.17%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRPGTA R +V P T+EPEV+PSA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E +VR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. ExPASy TrEMBL
Match:
A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 397.9 bits (1021), Expect = 3.8e-107
Identity = 227/309 (73.46%), Postives = 255/309 (82.52%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRP TA R +V P T+EPEVF SA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK PSPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E MVR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. ExPASy TrEMBL
Match:
A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 394.4 bits (1012), Expect = 4.2e-106
Identity = 226/309 (73.14%), Postives = 254/309 (82.20%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP--TTTEPEVFPSASTTTNVFQTSPIREKSP 60
MANLPRFGRTW RFSSLPRP TA R +V P T+EPEVF SA T NV QTSPI+E+SP
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVA-TTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYT 120
++ SPVRK SPP+SPKYR A +TSPRKPLSP PTYNRYDGERR+SA SPKTFK TYT
Sbjct: 61 RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSPPKQKYSTTTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQK-TAEK 180
SPPRSP K KYST+T APLSPL LP E RHE E MVR RSPPEV++K++ YQK T+EK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180
Query: 181 AVKSDHRATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKPGV 240
K+DHRA+EYS+GKP QK QQ QSDVINIKGENVGAVMHITQSSD TE K+KP V
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQ--QSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
Query: 241 GHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPTHG 300
+S+E ++ +NK SSSNMPGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA++K KPTH
Sbjct: 241 SYSSENEKDSNK-SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTK-KPTHA 300
Query: 301 DSLHDSSRH 305
DS+HD SRH
Sbjct: 301 DSVHD-SRH 304
BLAST of Lag0020624 vs. ExPASy TrEMBL
Match:
A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)
HSP 1 Score: 392.5 bits (1007), Expect = 1.6e-105
Identity = 223/312 (71.47%), Postives = 249/312 (79.81%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQP---TTTEPEVFPSASTTTNVFQTSPIREKS 60
M+NLPRFGRTW RFSSLPRP TA+R E QP TEPEVFPSA TTN QTSP+++++
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
Query: 61 PQVPSPVRKLPSPPSSPKYRG-VATTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTY 120
P++ SPV+K PSPPSSPKY G T SPRKPLSP TYNR+DGERRTSATTSPKTFKPTY
Sbjct: 61 PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
Query: 121 TSPPRSPPKQKYST-TTTAAPLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQ-KTA 180
SPP SPPK K+ST T APLSPL LPRSEVR E E +R RSPPE+E+K I YQ T
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
Query: 181 EKAVKSDHRAT-EYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRK 240
EK K+D+R T +Y KP QK H QQLQSDVINIKG+NVGAVMHITQSSDG+EI K+K
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQH-HQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKK 240
Query: 241 PGVGHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKP 300
P VG S E +EKTNK S+SN PGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLAYS P
Sbjct: 241 PSVGQSKENEEKTNK-SNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNP 300
Query: 301 THGDSLHDSSRH 305
HGDS+H+ SRH
Sbjct: 301 KHGDSIHE-SRH 309
BLAST of Lag0020624 vs. ExPASy TrEMBL
Match:
A0A0A0L5T3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)
HSP 1 Score: 392.5 bits (1007), Expect = 1.6e-105
Identity = 223/311 (71.70%), Postives = 251/311 (80.71%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTASRPEVQPTT--TEPEVFPSASTTTNVFQTSPIREKSP 60
M+NLPRFGR W RFSSLPRPGTA+RPE QP T TEPEVFPSA TTN FQTSPI++++P
Sbjct: 1 MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
Query: 61 QVPSPVRKLPSPPSSPKYRGVATTSPRKPLSPTPTYNRYDGERRTSATTSPKTFKPTYTS 120
++ SPV+K SPPSSPKY G T SPRKPLSP P +NRY+GERRTSATTSPKTFKPT+ S
Sbjct: 61 RLSSPVKKFSSPPSSPKYSGAGTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHIS 120
Query: 121 PPRSPPKQKYSTTTTA-APLSPLTLPRSEVRHELEHMVRSRSPPEVERKTI-YQ-KTAEK 180
PP SP K ++ST TA APLSPL LPRS+VR E EH +R RSPPE+E+K I YQ T EK
Sbjct: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180
Query: 181 AVKSDH--RATEYSAGKPHQKHHQQQQLQSDVINIKGENVGAVMHITQSSDGTEIQKRKP 240
K+DH + EY A KP QK Q QQLQSDVINIKGENVGAVMHITQSSDG+E+ K+KP
Sbjct: 181 PTKTDHYRQNDEYGASKPQQK-QQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKP 240
Query: 241 GVGHSNEGDEKTNKSSSSNMPGKSFMNSNFQGVNNSILYNSSLTHRDPGLHLAYSKNKPT 300
VG S E +EKTNK S+SN PGKSFMNSNFQGVNNSILYNSSL+HRDPGLHLA+ K
Sbjct: 241 TVGQSKENEEKTNK-SNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSK 300
Query: 301 HGDSLHDSSRH 305
HGDS+HD SRH
Sbjct: 301 HGDSIHD-SRH 308
BLAST of Lag0020624 vs. TAIR 10
Match:
AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )
HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 92/329 (27.96%), Postives = 143/329 (43.47%), Query Frame = 0
Query: 19 RPGTASRPEVQPTTTEPEVFPSAS-TTTNVFQTSPIREKSPQVPSPVRKLPSPPSSPKYR 78
+P T R + PT+ E P S + ++ +P + +P P P SPPS + +
Sbjct: 72 QPLTPPRQKAPPTSPPQERSPYHSPPSRHMSPPTPPKAATPPPPPPRSSYTSPPSPKEVQ 131
Query: 79 GVATTSPRKPLS-PTPTYNRYDGERRTSATTSPKTFKPTYTSPPRSPPKQKYSTTTTAAP 138
PRKP S P+P ++ R++ + S KT P+ + R P +
Sbjct: 132 --EALPPRKPNSPPSPAHS-----SRSTTSESVKTRSPSESENHRKAPSPRV-------- 191
Query: 139 LSPLTLPRSEVRHELE----HMVRSRSPPEVERKTIYQKTAEKAVKSDHRATE---YSAG 198
LSP +LP S + E E +++ + + + + +H + Y+
Sbjct: 192 LSPYSLPASLLHSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQN 251
Query: 199 KPHQ-----KHHQQQQ-------LQSDVINIKGENVGAVMHITQSSDGTE---------- 258
+ HQ K H+Q + + VI I GEN GAVM I +S G +
Sbjct: 252 QNHQGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSR 311
Query: 259 -----------IQKRKPGVGHSNEGDEKTNKS----SSSNMPGKSFMNSNFQGVNNSILY 302
+Q EG +KT K+ +SN+P K+FMNSN Q +NNSI+Y
Sbjct: 312 VSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVY 371
BLAST of Lag0020624 vs. TAIR 10
Match:
AT1G75260.1 (oxidoreductases, acting on NADH or NADPH )
HSP 1 Score: 42.7 bits (99), Expect = 6.0e-04
Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 205 VINIKGENVGAVMHITQSSD--GTEIQKRKPGVGHSNEGDEKTNKSSSSNMPGK------ 264
V + GEN GA M I D E+ R+ G+ + DE +N +++ K
Sbjct: 345 VYTLTGENKGATMGIGSEKDKKDGEVHIRR---GYRSNPDESSNTTATETENPKDDEAEE 404
Query: 265 -----SFMNSNFQGVNNSILYNSSLTHRDPGLHLAY 288
+++N N QG+NNSI+ SS++ DPG+H+++
Sbjct: 405 EASFTAYINGNTQGINNSIVVESSVSENDPGVHMSF 437
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6597058.1 | 3.2e-108 | 73.79 | hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022945677.1 | 9.3e-108 | 73.46 | DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata] | [more] |
XP_023538835.1 | 9.3e-108 | 73.46 | proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo] | [more] |
XP_022974814.1 | 7.9e-107 | 73.46 | DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... | [more] |
XP_038904572.1 | 6.7e-106 | 73.72 | pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1G1L2 | 4.5e-108 | 73.46 | DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L... | [more] |
A0A6J1IEX0 | 3.8e-107 | 73.46 | DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=... | [more] |
A0A6J1IHF4 | 4.2e-106 | 73.14 | DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=... | [more] |
A0A5A7TZ60 | 1.6e-105 | 71.47 | Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m... | [more] |
A0A0A0L5T3 | 1.6e-105 | 71.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G46630.1 | 1.7e-11 | 27.96 | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... | [more] |
AT1G75260.1 | 6.0e-04 | 31.25 | oxidoreductases, acting on NADH or NADPH | [more] |