![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lag0020601 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACCAAACTGCTTCAACTGCGTAAGCTTTCAAGGACACTGAAGCTGCCATCTTCTTCTTCTTCTGCTTCCTCTTTCAGGAAGCTTTCATATCTTCTAGAAGCTTCAAGACCTCTCCTCGATCTCTCCGATAATGTTTATCAATTTCATCCTCCATTTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCTACCATTGGTTACAGGTAATTTGTTCCTCTTCTTTCTTTCATTTTCCGATTTTTTTAACCTTTCTTTAATATGAACCATGTATTTGAATCGAAATTTTGAAGAGAAGTTCCACCTCCGACCCTTCCCCCAATCTTTGCAATCTTCAAGTCTTTTCAATTTGGTAATTGTTTTTGGTCCAATGTCTCCAATTGTTTTCTCTCGTCTGATTTTTAACCAAACTGGAAACGGGTTCGTGGTCATTCAACAAAGTGTTGTGGGTGTCTACTTCCCTTGATTGAACAAATTACAATTGATATTCATGGGGTTTTCTTTGAGCGTTGATATCATAGTTGAATGCATTTGGTAGAGATGGGCTCAAGTGATCTTGTGGCTAATATTTTCTGCAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGGCTAGCTGATTCCACAATTCATGGACTGCAAGAGAAATTAGAGGTACTTGTTTATAAATGAAGTGACAAAGTTTTGCCCTTGATTTTATCTTATAAACTGAAGGAAAGTAACAGCTTATACTTTACATATGCATATTTTGGATTTGCTGTTAAAATTTTGTGAACTTTATTTCATTGCTTGCTAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGGTGAGAATGACCAAGCAGTTCTAGAATTTGATAACTTCATTTCATATGAATAGATGATGCTTAATCTTGTCTGATTTTCATTACGCAGAATGAGGTACTGACCTTAAGGCTCGATGATCTTGGCACTTATGTCTTCAACAAACAAACACCAAACAGACAAATTTGGCTTTCTTCCCCTGTGAGGTATGGATTATTTGCCAGTTGAATGACTAGAATCTACAATGTTCGTCCTTTCCATTTCTTTCGAAGATCATTTCAGACCTTGTCCCTGTTTCCATTTTATGACAAAGTTTCAGCTCACTCGTCTTTTCAATGTCTTTAGTGAAAAATGGAATTTGTTCTGTTCATATAAACACAAAGAAATCTTAGTGACAACCCAGGTTATTTTCTTCCTTGCAGTGGTCCGTCCAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGACTTTTAGAAACTGAACTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCCTGA ATGGCTACCAAACTGCTTCAACTGCGTAAGCTTTCAAGGACACTGAAGCTGCCATCTTCTTCTTCTTCTGCTTCCTCTTTCAGGAAGCTTTCATATCTTCTAGAAGCTTCAAGACCTCTCCTCGATCTCTCCGATAATGTTTATCAATTTCATCCTCCATTTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCTACCATTGGTTACAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGGCTAGCTGATTCCACAATTCATGGACTGCAAGAGAAATTAGAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGATGATCTTGGCACTTATGTCTTCAACAAACAAACACCAAACAGACAAATTTGGCTTTCTTCCCCTGTGAGTGGTCCGTCCAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGACTTTTAGAAACTGAACTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCCTGA ATGGCTACCAAACTGCTTCAACTGCGTAAGCTTTCAAGGACACTGAAGCTGCCATCTTCTTCTTCTTCTGCTTCCTCTTTCAGGAAGCTTTCATATCTTCTAGAAGCTTCAAGACCTCTCCTCGATCTCTCCGATAATGTTTATCAATTTCATCCTCCATTTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCTACCATTGGTTACAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGGCTAGCTGATTCCACAATTCATGGACTGCAAGAGAAATTAGAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGATGATCTTGGCACTTATGTCTTCAACAAACAAACACCAAACAGACAAATTTGGCTTTCTTCCCCTGTGAGTGGTCCGTCCAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGACTTTTAGAAACTGAACTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCCTGA MATKLLQLRKLSRTLKLPSSSSSASSFRKLSYLLEASRPLLDLSDNVYQFHPPFFSRSFCSRPLDFVGDDSRGPATIGYSSLMQEGEFHRLADSTIHGLQEKLEEYGDDLQIDGFDVDYGNEVLTLRLDDLGTYVFNKQTPNRQIWLSSPVSGPSRFDWDQNSQAWIYRRNKANLLRLLETELAQLCGEPIDLS Homology
BLAST of Lag0020601 vs. NCBI nr
Match: XP_022971111.1 (frataxin, mitochondrial [Cucurbita maxima]) HSP 1 Score: 357.1 bits (915), Expect = 9.8e-95 Identity = 179/196 (91.33%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Lag0020601 vs. NCBI nr
Match: KAG6604827.1 (Frataxin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93 Identity = 177/196 (90.31%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Lag0020601 vs. NCBI nr
Match: XP_022947402.1 (frataxin, mitochondrial [Cucurbita moschata]) HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93 Identity = 177/196 (90.31%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Lag0020601 vs. NCBI nr
Match: XP_023533562.1 (frataxin, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 352.1 bits (902), Expect = 3.2e-93 Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0
BLAST of Lag0020601 vs. NCBI nr
Match: XP_022140770.1 (frataxin, mitochondrial [Momordica charantia]) HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91 Identity = 173/195 (88.72%), Postives = 182/195 (93.33%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy Swiss-Prot
Match: Q9ZR07 (Frataxin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FH PE=1 SV=2) HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50 Identity = 106/189 (56.08%), Postives = 133/189 (70.37%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy Swiss-Prot
Match: Q05B87 (Frataxin, mitochondrial OS=Bos taurus OX=9913 GN=FXN PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 3.0e-22 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy Swiss-Prot
Match: Q16595 (Frataxin, mitochondrial OS=Homo sapiens OX=9606 GN=FXN PE=1 SV=2) HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22 Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy Swiss-Prot
Match: O35943 (Frataxin, mitochondrial OS=Mus musculus OX=10090 GN=Fxn PE=1 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21 Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy Swiss-Prot
Match: Q8HXX9 (Frataxin, mitochondrial OS=Macaca fascicularis OX=9541 GN=FXN PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 3.7e-20 Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy TrEMBL
Match: A0A6J1I2E7 (Ferroxidase OS=Cucurbita maxima OX=3661 GN=LOC111469879 PE=3 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 4.8e-95 Identity = 179/196 (91.33%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy TrEMBL
Match: A0A6J1G6C8 (Ferroxidase OS=Cucurbita moschata OX=3662 GN=LOC111451278 PE=3 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93 Identity = 177/196 (90.31%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy TrEMBL
Match: A0A6J1CG34 (Ferroxidase OS=Momordica charantia OX=3673 GN=LOC111011350 PE=3 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 4.9e-92 Identity = 173/195 (88.72%), Postives = 182/195 (93.33%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy TrEMBL
Match: A0A1S3BJ48 (Ferroxidase OS=Cucumis melo OX=3656 GN=LOC103490464 PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 2.6e-85 Identity = 164/194 (84.54%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lag0020601 vs. ExPASy TrEMBL
Match: A0A0A0KAC6 (Ferroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G121430 PE=3 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83 Identity = 160/191 (83.77%), Postives = 168/191 (87.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|