![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lag0020542 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAACAAACCGGAACAACCAAGTACAATTCCAACAATGCAAATGGGAAGAACCCAACAAGATTTCCAAATTGAAGATAGTAGAACAAGATATGGGTATGAAAAACGATCCGCAGAACAAAGGACTATTCAAGAAACAGATCCGGTACCAAGATTCCATCCAGAACACCACGCGGGACAACAAGAATTCAAGCACAACCCTTTATTTAGAAGGCAACCCGAGTGGAATGAGGACAACTCTAGTGAGGAAGAGTATGAGCATCAAGAAATGCAAGGGGAAGGACAAAGAAACTATAGATATCAATATCAACAAGAGAATGATTTTAAAATGAAGATCGATATACCAACATATGGTGGTAAAATGGAGATTGAGGTCTTCTTGGAATGGGTTAGACACGTAGAAAACTTTTTTAATTATATGAATACCCCCAATAACAAGAAGGTAAAATTGGTGGCTCTAAAATTGAGGGGAGGAGCTCAAGCATGGTGGGATCAACTAGAACTAAACCGCCAAAGATATGGTAAAAGGACAATCCGAAGCTGA ATGGGCAACAAACCGGAACAACCAAGTACAATTCCAACAATGCAAATGGGAAGAACCCAACAAGATTTCCAAATTGAAGATAGTAGAACAAGATATGGGTATGAAAAACGATCCGCAGAACAAAGGACTATTCAAGAAACAGATCCGGTACCAAGATTCCATCCAGAACACCACGCGGGACAACAAGAATTCAAGCACAACCCTTTATTTAGAAGGCAACCCGAGTGGAATGAGGACAACTCTAGTGAGGAAGAGTATGAGCATCAAGAAATGCAAGGGGAAGGACAAAGAAACTATAGATATCAATATCAACAAGAGAATGATTTTAAAATGAAGATCGATATACCAACATATGGTGGTAAAATGGAGATTGAGGTCTTCTTGGAATGGGTTAGACACGTAGAAAACTTTTTTAATTATATGAATACCCCCAATAACAAGAAGGTAAAATTGGTGGCTCTAAAATTGAGGGGAGGAGCTCAAGCATGGTGGGATCAACTAGAACTAAACCGCCAAAGATATGGTAAAAGGACAATCCGAAGCTGA ATGGGCAACAAACCGGAACAACCAAGTACAATTCCAACAATGCAAATGGGAAGAACCCAACAAGATTTCCAAATTGAAGATAGTAGAACAAGATATGGGTATGAAAAACGATCCGCAGAACAAAGGACTATTCAAGAAACAGATCCGGTACCAAGATTCCATCCAGAACACCACGCGGGACAACAAGAATTCAAGCACAACCCTTTATTTAGAAGGCAACCCGAGTGGAATGAGGACAACTCTAGTGAGGAAGAGTATGAGCATCAAGAAATGCAAGGGGAAGGACAAAGAAACTATAGATATCAATATCAACAAGAGAATGATTTTAAAATGAAGATCGATATACCAACATATGGTGGTAAAATGGAGATTGAGGTCTTCTTGGAATGGGTTAGACACGTAGAAAACTTTTTTAATTATATGAATACCCCCAATAACAAGAAGGTAAAATTGGTGGCTCTAAAATTGAGGGGAGGAGCTCAAGCATGGTGGGATCAACTAGAACTAAACCGCCAAAGATATGGTAAAAGGACAATCCGAAGCTGA MGNKPEQPSTIPTMQMGRTQQDFQIEDSRTRYGYEKRSAEQRTIQETDPVPRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEEYEHQEMQGEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS Homology
BLAST of Lag0020542 vs. NCBI nr
Match: XP_031744062.1 (uncharacterized protein LOC116404773 [Cucumis sativus]) HSP 1 Score: 117.9 bits (294), Expect = 9.4e-23 Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 0
BLAST of Lag0020542 vs. NCBI nr
Match: KAA0061454.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK10825.1 reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 116.7 bits (291), Expect = 2.1e-22 Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 0
BLAST of Lag0020542 vs. NCBI nr
Match: KAA0051973.1 (E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]) HSP 1 Score: 116.7 bits (291), Expect = 2.1e-22 Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 0
BLAST of Lag0020542 vs. NCBI nr
Match: TYK22339.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 112.5 bits (280), Expect = 3.9e-21 Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 0
BLAST of Lag0020542 vs. NCBI nr
Match: XP_031745523.1 (uncharacterized protein LOC116405899 [Cucumis sativus]) HSP 1 Score: 110.5 bits (275), Expect = 1.5e-20 Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|