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Lag0020527 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTTCATGTAAGGCTATGTCCACTCCTATGGCAGCTGGTACATCTATTTCTGCTCATGATAGTGATTTATTATCTAATCCTAAGCAGTATCGTAGTATCTTTGTGGCTCTACAATATTGCACTTTGACTAGGCTTGATTTGAGCTTTGTTGTAAACAAAGCATGTCAGTTTCTTCATGCCCCTACCTTCGTTCACTGGAATTTGGTGAAGCGTATACTTCAGTATCTAAAGACTACTACTCATCTTTGTCTTAATTTCAGGAAGTTTGGAACTCTTTCTTTGACTAGTTACACAGATGTCGATTGA ATGATTTCATGTAAGGCTATGTCCACTCCTATGGCAGCTGGTACATCTATTTCTGCTCATGATAGTGATTTATTATCTAATCCTAAGCAGTATCGTAGTATCTTTGTGGCTCTACAATATTGCACTTTGACTAGGCTTGATTTGAGCTTTGTTGTAAACAAAGCATGTCAGTTTCTTCATGCCCCTACCTTCGTTCACTGGAATTTGGTGAAGCGTATACTTCAGTATCTAAAGACTACTACTCATCTTTGTCTTAATTTCAGGAAGTTTGGAACTCTTTCTTTGACTAGTTACACAGATGTCGATTGA ATGATTTCATGTAAGGCTATGTCCACTCCTATGGCAGCTGGTACATCTATTTCTGCTCATGATAGTGATTTATTATCTAATCCTAAGCAGTATCGTAGTATCTTTGTGGCTCTACAATATTGCACTTTGACTAGGCTTGATTTGAGCTTTGTTGTAAACAAAGCATGTCAGTTTCTTCATGCCCCTACCTTCGTTCACTGGAATTTGGTGAAGCGTATACTTCAGTATCTAAAGACTACTACTCATCTTTGTCTTAATTTCAGGAAGTTTGGAACTCTTTCTTTGACTAGTTACACAGATGTCGATTGA MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDVD Homology
BLAST of Lag0020527 vs. NCBI nr
Match: RVW23101.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20 Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0
BLAST of Lag0020527 vs. NCBI nr
Match: RVW77515.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 108.6 bits (270), Expect = 3.2e-20 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0
BLAST of Lag0020527 vs. NCBI nr
Match: RVX05509.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 107.5 bits (267), Expect = 7.1e-20 Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 0
BLAST of Lag0020527 vs. NCBI nr
Match: XP_038891702.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]) HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20 Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 0
BLAST of Lag0020527 vs. NCBI nr
Match: PKI78139.1 (hypothetical protein CRG98_001467 [Punica granatum]) HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19 Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 0
BLAST of Lag0020527 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 4.5e-17 Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 0
BLAST of Lag0020527 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.9e-15 Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 0
BLAST of Lag0020527 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12 Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 0
BLAST of Lag0020527 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 9.4e-07 Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 0
BLAST of Lag0020527 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.3e-05 Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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