Lag0020150 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020150
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNA-binding protein 2-like isoform X1
Locationchr5: 48436037 .. 48436958 (+)
RNA-Seq ExpressionLag0020150
SyntenyLag0020150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATCATACGACTCTCAAATTCCAAAGTTATGTGGCTTGAAGAATTTGAGATTGTTTATGCTATTCTGCTTTCGAAAGGTGGGAAATCTGGTTAGTTTTGTAATTGGTACCATAGGTTATGCTGTCCTTTAAGAGTCTCATATTTTCAGTTCTTAAGCAGATGTAAGGCTTATTACATTTAAGACCGACTAGTTATGAAGTTTTAACTCTTGCTTTGGTTCAACAGGGTTGCTGTTTCTGGTAATGATAAATTATATTTGCTATTTTAATTGTGTGATGAACTCAATGGTGTCTGACATTTGCATTCTGATTCTACATCCTTTCCAATTTTTACGTTAAAATTTAGACTTGGGGTGGGGCTTCGTATGCCTCCTAAAGCAGGTTGACGAACACCACCATGAATACCTCCACGAGTGTAATAAGGTCCTTTGTGATGCCCCTTTGAATTAAGTAGAAAATTTGAGTATAATAAATTAAAGGTGACTATTAGACTACTTGTGATACAAATCATTTTACACGTCTTATATCCGATGTTTGTTCTTTCCCTACCTCGTCGTTCTACACGTAGCTACAACATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCACAGGTGATAAAATGCCTTCTTCGATCTACTCGACCAATTATTTTCTTTGCCACATGGTAGAGTCCAAGGAAAAGTTCATTTAAACGCTGAATCACTCTAAATCGTGGACGACTCTTGTGTAGGATTTGCGCGTACGATGAAGTTATGAATTTGAGGCAATATGACAGTCCCCCCATATCAAAAACCGGAGCGTATTAG

mRNA sequence

ATGTTTATCATACGACTCTCAAATTCCAAAGTTATGTGGCTTGAAGAATTTGAGATTGTTTATGCTATTCTGCTTTCGAAAGGTGGGAAATCTGGGTTGCTGTTTCTGCTACAACATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTTGCGCGTACGATGAAGTTATGAATTTGAGGCAATATGACAGTCCCCCCATATCAAAAACCGGAGCGTATTAG

Coding sequence (CDS)

ATGTTTATCATACGACTCTCAAATTCCAAAGTTATGTGGCTTGAAGAATTTGAGATTGTTTATGCTATTCTGCTTTCGAAAGGTGGGAAATCTGGGTTGCTGTTTCTGCTACAACATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTTGCGCGTACGATGAAGTTATGAATTTGAGGCAATATGACAGTCCCCCCATATCAAAAACCGGAGCGTATTAG

Protein sequence

MFIIRLSNSKVMWLEEFEIVYAILLSKGGKSGLLFLLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGARICAYDEVMNLRQYDSPPISKTGAY
Homology
[Close]
BLAST of Lag0020150 vs. NCBI nr
Match: KAG6753630.1 (hypothetical protein POTOM_041616 [Populus tomentosa])

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 36  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR 73
           L+Q  +V+LDFAGY+FDE DRDS NLRLQFAR+PGAR
Sbjct: 228 LVQRETVKLDFAGYRFDEHDRDSFNLRLQFARYPGAR 264

[Close]
BLAST of Lag0020150 vs. NCBI nr
Match: KAB5524074.1 (hypothetical protein DKX38_021823 [Salix brachista])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 36  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR 73
           L+Q   V+LDFAGY+FDE DRDSV+LRLQFAR+PGAR
Sbjct: 262 LVQRKIVKLDFAGYRFDEHDRDSVHLRLQFARYPGAR 298

[Close]
BLAST of Lag0020150 vs. NCBI nr
Match: XP_021626951.1 (RNA-binding protein 1-like isoform X1 [Manihot esculenta])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 40  ISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR 73
           + V+LDFAGYKFDE DRDSV+LRLQFAR+PGAR
Sbjct: 196 LQVKLDFAGYKFDEHDRDSVHLRLQFARYPGAR 228

[Close]
BLAST of Lag0020150 vs. NCBI nr
Match: CAA2616673.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 36  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR 73
           LL    +  DFAGYKFDE DRDS NLRLQFARFPG R
Sbjct: 191 LLMPYKLRFDFAGYKFDEHDRDSANLRLQFARFPGPR 227

[Close]
BLAST of Lag0020150 vs. NCBI nr
Match: KAG6422544.1 (hypothetical protein SASPL_119120 [Salvia splendens])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 36  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR 73
           L+ +I++EL+ AGY FDE DRDS +LRLQFARFPGAR
Sbjct: 269 LVGNINIELNLAGYNFDEHDRDSTHLRLQFARFPGAR 305

The following BLAST results are available for this feature:
BLAST of Lag0020150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6753630.12.5e-0675.68hypothetical protein POTOM_041616 [Populus tomentosa][more]
KAB5524074.15.5e-0675.68hypothetical protein DKX38_021823 [Salix brachista][more]
XP_021626951.15.5e-0681.82RNA-binding protein 1-like isoform X1 [Manihot esculenta][more]
CAA2616673.12.7e-0572.97unnamed protein product [Spirodela intermedia][more]
KAG6422544.13.6e-0570.27hypothetical protein SASPL_119120 [Salvia splendens][more]
BLAST of Lag0020150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020150.1Lag0020150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding