Lag0020143 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020143
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 48397977 .. 48398550 (-)
RNA-Seq Expression	Lag0020143
Synteny	Lag0020143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAAACCTCTACCTTTCTCATTCTTATACTCCTTTTCCTCTGTTCCTTCTCTTCGGGTAAGAATCTTTCAACATCACAGAAATTGCTCATTGCCATAGCTTAAGAGAAACATAACCTCCCTCTTTCCTTTCTTCCATTGCAGCAGAGTTTGAGGACTTCAATACTAGGATGAATCTTGATCACTCTCCTAACAAGGTACAGTAAAGTACAGCAGATCCATGGAGAAAGTGGTGAATGTTTGGTTTTTCATCTTTGAAAGCCATACACTTTTCTCCAGAGATTGTACAAATACCAATGTTTCTATTTCCTAAAGAATGATTGCGATGAGTTTGATATATTTCAGGAATCTGGCCTGGACGAGGATTTCTTCACTGCGAGTAAAAATTTGAAGCTTTGAAAGTTATACCATGTATTGTGTTGGTTATCTTACAGTAATCTTTTCTTTCATGAAGGATGGATTCCAAATGAAGATGAGGAAGCTTTTGATGGTTGACAGACCAGATTATGATGATCCTGTAGCTAACCGTAAGCATGAGCCTCAGAAACCTGGCACTGGGAAGCCATAG

mRNA sequence

ATGGCTTCCAAAACCTCTACCTTTCTCATTCTTATACTCCTTTTCCTCTGTTCCTTCTCTTCGGCAGAGTTTGAGGACTTCAATACTAGGATGAATCTTGATCACTCTCCTAACAAGGATGGATTCCAAATGAAGATGAGGAAGCTTTTGATGGTTGACAGACCAGATTATGATGATCCTGTAGCTAACCGTAAGCATGAGCCTCAGAAACCTGGCACTGGGAAGCCATAG

Coding sequence (CDS)

ATGGCTTCCAAAACCTCTACCTTTCTCATTCTTATACTCCTTTTCCTCTGTTCCTTCTCTTCGGCAGAGTTTGAGGACTTCAATACTAGGATGAATCTTGATCACTCTCCTAACAAGGATGGATTCCAAATGAAGATGAGGAAGCTTTTGATGGTTGACAGACCAGATTATGATGATCCTGTAGCTAACCGTAAGCATGAGCCTCAGAAACCTGGCACTGGGAAGCCATAG

Protein sequence

MASKTSTFLILILLFLCSFSSAEFEDFNTRMNLDHSPNKDGFQMKMRKLLMVDRPDYDDPVANRKHEPQKPGTGKP

Homology

[Close]

BLAST of Lag0020143 vs. NCBI nr
Match: KAG7013312.1 (hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 23 EFEDFNTRMNLDHSPNK-----DGFQMKMRKLLMVDRPDYDDPVANRKHEPQKPGTGK 76
          EF   NT+MNL+HSPNK     DGFQM+MRKLL+V RPDYDDPV N  HEPQKP TGK
Sbjct: 8  EFGASNTKMNLNHSPNKVYRKVDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPATGK 63

[Close]

BLAST of Lag0020143 vs. NCBI nr
Match: XP_022945271.1 (uncharacterized protein LOC111449569 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 38  NKDGFQMKMRKLLMVDRPDYDDPVANRKHEPQKPGTGK 76
           ++DGFQM+MRKLL+V RPDYDDPV N  HEPQKPGTGK
Sbjct: 77  SEDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPGTGK 112

[Close]

BLAST of Lag0020143 vs. NCBI nr
Match: PNT08961.1 (hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08962.1 hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08963.1 hypothetical protein POPTR_012G017400 [Populus trichocarpa])

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-06
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 7  TFLILILLFLCSFSSAEFEDFNTRMNLDHSPNKDGFQMKMRKLLMVDRPDYDDPVANRKH 66
          TFL++ LL L   SS   E F+  MN   S +KDG Q+  RKLL+VD  DYDD  ANR+H
Sbjct: 10 TFLLVSLLLLAPLSSGFVEGFDEGMNSYPSLHKDGIQVNTRKLLLVDELDYDDAGANRRH 69

Query: 67 EPQ-KPGTG 75
          +P+ +PG G
Sbjct: 70 DPRGRPGVG 78

[Close]

BLAST of Lag0020143 vs. NCBI nr
Match: XP_025014387.1 (uncharacterized protein LOC112535876 [Ricinus communis] >EEF36131.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 7  TFLILILLFLCSFSSAEFEDFNTRMNLDHSPNKDGFQMKMRKLLMVDRPDYDDPVANRKH 66
          T L+L LL L  FSS   E F   MN +HS +KD FQM   + L+++  DYDD   N KH
Sbjct: 9  TLLLLSLLLLIPFSSGMVEGFREGMNPNHSLHKDVFQMINTRKLLMNMLDYDDTGPNTKH 68

Query: 67 EPQKPGTGKP 77
          +P+K G GKP
Sbjct: 69 DPRKKG-GKP 77

The following BLAST results are available for this feature:

BLAST of Lag0020143 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013312.1	4.5e-11	70.69	hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022945271.1	2.0e-06	78.95	uncharacterized protein LOC111449569 [Cucurbita moschata]	[more]
PNT08961.1	5.7e-06	50.72	hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08962.1 hypothet...	[more]
XP_025014387.1	3.1e-04	48.57	uncharacterized protein LOC112535876 [Ricinus communis] >EEF36131.1 conserved hy...	[more]

BLAST of Lag0020143 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	PANTHER	PTHR34467	TRANSMEMBRANE PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020143.1	Lag0020143.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane