Lag0020133 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020133
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 48358649 .. 48359640 (+)
RNA-Seq ExpressionLag0020133
SyntenyLag0020133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTGGTAATTGGGGTTCTTGTTGTGGAGGTTTTGTATTCAATTTTGGTTCTGATTATATCGAATTGTGTGCTATTTCTTATGCTCCTTTCTGCTTTACAGGTCGAAACGAAGGAAGAAACTCGAGCGGTCAATTCTTCTGGACCCACGAAGGGCTTGTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGTGATACAATTTATTGTTTCTCTATAATACTTTGCACAAGAAGATGCTCCACACTGCTTTAACTTTGGCTGAACCTCTGAAAGGTATTTGATATCATTTTCCTTTCACTGGAGAAAGAAGAGTGGTTTTTACTGTTTTTAGCTATGAGTTTGGAAAATAGGTTTTGGTGGGTTTCCTTGATTTGGGTTATTATTGTTTTTCCTTTGCAAATTGCAATCATCGCTGTTACTGTGCATTGTTACCAACCCCTTTGTGTTCTGCTTCAAAAGCTAAGAAGTAAACGACATAATCACCTTGTGAGAACTGAAAGTATCTTGCACAGATGCAGCCTTTTGAAATAGTTTCTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTTTATGCTGGCACTGGCAGACTACAGTGGAAAAAGAATAGTATTGTAGATGACTTTTTGATGCATAAATGTTGCCTTTTCTCTTCAGTTTGTATTTGGTTTGCTTTATCAACCAGTCATGACCTGTGATAGAGAAAATTGGAGGAGATGGGATTGGGGGAGATGGAAAAGTGGAAAAGCAAGTGGGGTTCATTGCAGTCTGTCTTTTCCCTGAAAACCAGGGACAATTCTCTTTTATTCTTTTTTCATTTTTATGACTCTTGTATTGTGTTGTAGTTTGGCTTCCACATGACTGTTCTGCAGACTTTGGCACATGTAAAAGCAGCCATGGTTTTGACATTTCATGTTCTGATTGATAACCTTATAGCCTTGATCCAACTAGCATATTGCAATTTTATGATTTGGTGA

mRNA sequence

ATGCTCGTGGTCGAAACGAAGGAAGAAACTCGAGCGGTCAATTCTTCTGGACCCACGAAGGGCTTGTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAATTTGGCTTCCACATGACTGTTCTGCAGACTTTGGCACATGTAAAAGCAGCCATGGTTTTGACATTTCATGTTCTGATTGATAACCTTATAGCCTTGATCCAACTAGCATATTGCAATTTTATGATTTGGTGA

Coding sequence (CDS)

ATGCTCGTGGTCGAAACGAAGGAAGAAACTCGAGCGGTCAATTCTTCTGGACCCACGAAGGGCTTGTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAATTTGGCTTCCACATGACTGTTCTGCAGACTTTGGCACATGTAAAAGCAGCCATGGTTTTGACATTTCATGTTCTGATTGATAACCTTATAGCCTTGATCCAACTAGCATATTGCAATTTTATGATTTGGTGA

Protein sequence

MLVVETKEETRAVNSSGPTKGLLTELLHHFVYELKFGFHMTVLQTLAHVKAAMVLTFHVLIDNLIALIQLAYCNFMIW
Homology
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BLAST of Lag0020133 vs. NCBI nr
Match: KGN57663.1 (hypothetical protein Csa_011496 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 48/129 (37.21%), Postives = 54/129 (41.86%), Query Frame = 0 

Query: 7   KEETRAVNSSGPTKGLLTELLHHFVYELK---------------------------FGF- 66
           K++ +   SSGPTKG LTELLH+FVYELK                            GF 
Sbjct: 64  KKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFV 123

Query: 67  -----HMTVL-------------------------QTLAHVKAAMVLTFHVLIDNLIALI 78
                H  +L                         QT AHVKAAMVL FH L+D LIA I
Sbjct: 124 IVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLIAFI 183

The following BLAST results are available for this feature:
BLAST of Lag0020133 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57663.14.2e-0437.21hypothetical protein Csa_011496 [Cucumis sativus][more]
BLAST of Lag0020133 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020133.1Lag0020133.1mRNA