Lag0020027 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020027
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description60S ribosomal protein L36
Locationchr5: 47482085 .. 47483173 (+)
RNA-Seq ExpressionLag0020027
SyntenyLag0020027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAGGAGTTGGCTCCGCGCCCTTCAGATCGTAAAGGAGTGAGTGAATTCTGTCTTCGTTAATGTAGTGTGTACATTGTCGAATCATATACATTATTCAAACTATTCCGTGTTTAAATTTTTATCGAGTTAATTTTGTTTATCACTTTCCTTGTTTGGATTTTAGTGGTGGGATATAACTAGGGTTTGCCTGTGCAGAAGGAAGCTTGGGAGGGGTGATTTAATAAGACATTCTTAATATTTATCTTATTCAATATGAATTCAAGTATTTACTCTACAAAAGCTCATGGGCAAGGGGAAGTATTTGCTCTACAGAAGCTCTTGAGCAAGAGGATAGATCTTGATCATGCATTTTCATTGTTTTGCTCTACAAAAGCTCTACAAAAACTCCTTAAAAGTTCTTATTTATTTACGGGAATGATTATCCGCTTGTTCTCAAGATTCATAATGTTGAAATGAAATCTAGTTAAGGAGTTCACTTTATGAGGCTCTTGGGCATATGCTCATAATCATTTTGCTTCTCGTATCATACTAATTTAAACTTGTTTTCTTCTGGATTATTAGTTTCCTTAAAGTTGTTTTAGTTGTTGATAGATAGAAGGGATTGACATCAATGATTGATGATAGCTTGAATTTGATTGATACCATAGAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTCGCTGGCTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGATAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTCTAGAAGGCTTTCAATTTCCCTCATTAGGATTGAATTTTTATTCTCATTCACTTTTTACATGTTATCAATGAATACTTCATGTAATTGCATTTCTGCTACATAATTTAACTCATTTCTTTGACTTTCTTTTTTGATACAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGA

mRNA sequence

ATGGCACCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAGGAGTTGGCTCCGCGCCCTTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTCGCTGGCTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGATAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGA

Coding sequence (CDS)

ATGGCACCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAGGAGTTGGCTCCGCGCCCTTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTCGCTGGCTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGATAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Homology
[Close]
BLAST of Lag0020027 vs. NCBI nr
Match: KAG7013242.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 61

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]
BLAST of Lag0020027 vs. NCBI nr
Match: KAG6574185.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1    MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
            MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 965  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 1024

Query: 61   TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
            TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 1025 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1074

[Close]
BLAST of Lag0020027 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >KAG6605730.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035637.1 60S ribosomal protein L36-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]
BLAST of Lag0020027 vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 9.3e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]
BLAST of Lag0020027 vs. NCBI nr
Match: KAG6576718.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.8 bits (525), Expect = 9.3e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 648 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 707

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 708 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 757

[Close]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-42
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-40
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-29
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0 

Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

The following BLAST results are available for this feature:
BLAST of Lag0020027 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013242.14.2e-50100.0060S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
KAG6574185.14.2e-50100.0060S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022945858.14.2e-50100.0060S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso... [more]
XP_022923053.19.3e-5099.0960S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1... [more]
KAG6576718.19.3e-5099.0960S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lag0020027 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3525.7e-4281.2560S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
Q9LZ576.9e-4082.8660S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
O809291.5e-3982.8660S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
P528662.2e-3382.4260S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
Q9LRB89.4e-2971.8860S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038097Ribosomal protein L36e domain superfamilyGENE3D1.10.10.176060S ribosomal protein L36coord: 1..105
e-value: 1.0E-44
score: 153.1
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 8..101
e-value: 8.5E-43
score: 144.5
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 1..110
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 55..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..110
NoneNo IPR availablePANTHERPTHR10114:SF1460S RIBOSOMAL PROTEIN L36-1-RELATEDcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020027.1Lag0020027.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome