Lag0020012 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020012
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRemorin family protein
Locationchr5: 47382267 .. 47383080 (-)
RNA-Seq ExpressionLag0020012
SyntenyLag0020012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCTGGAAGCACAAGCGATCAGACGAAGAACGAATTAAAAATTAAGGCTTGGGAAGATAGAGAAAAAATCAAAGCCGAAAACAAGTCAGTTCCCTCTCTCTCTTCTGTTTATTTTAACATTATCTTACGATTTCTTTTTTGAACAAAGATTTGAACTTTTGACCATCTACTTGAATATATAATATTTTCTATCAATTTGGCTTTGCTCAACGTGCACAACTACTTAGTACAGTGGACAAGACACCAATTACCATTTCAAAAGTCAATGATTCGATTTCCACCCATAAAATTCTTGAACTTAAAAAAATTATATTATACACCTTATAAGAAAAAAAAAAAAGTAGATTAGAAATGTGAATTTTACCAACCCTTTTTACTTTTCACTAAGTTGAAGTCTTGGAATAAAATTTGTGCAGAGCTGAAAGGAAGTTAGCTTCCACTGAGGCATGGAAGAGCACAAAGAAATCTGCTCTAGAAGCTGAAGTCAAGAAGATAGAGGTAAATTAAATTTTATAATCCTAATTAAGTTTTGAAATTAATTAACCCTAATGAAAATGGAGTATTAATTTCATATATATATATATATATATATATATTATATGGGGAAGGGTGATTTGGAGAAGATGAGGCTAAAGGAAATGGAGAAAGTAAAAAACAAAGAGGCTGAGACTCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAGAGAGAGCACAAAAAGCAAAAGGTTGAAGAGAAAGCTGCCAAGCATAGGTCTTCCAATACAGTTCCAACCAAGTGTTTTGGCATTTGCCAAGACTAG

mRNA sequence

ATGGTAGCTGGAAGCACAAGCGATCAGACGAAGAACGAATTAAAAATTAAGGCTTGGGAAGATAGAGAAAAAATCAAAGCCGAAAACAAAGCTGAAAGGAAGTTAGCTTCCACTGAGGCATGGAAGAGCACAAAGAAATCTGCTCTAGAAGCTGAAGTCAAGAAGATAGAGGGTGATTTGGAGAAGATGAGGCTAAAGGAAATGGAGAAAGTAAAAAACAAAGAGGCTGAGACTCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAGAGAGAGCACAAAAAGCAAAAGGTTGAAGAGAAAGCTGCCAAGCATAGGTCTTCCAATACAGTTCCAACCAAGTGTTTTGGCATTTGCCAAGACTAG

Coding sequence (CDS)

ATGGTAGCTGGAAGCACAAGCGATCAGACGAAGAACGAATTAAAAATTAAGGCTTGGGAAGATAGAGAAAAAATCAAAGCCGAAAACAAAGCTGAAAGGAAGTTAGCTTCCACTGAGGCATGGAAGAGCACAAAGAAATCTGCTCTAGAAGCTGAAGTCAAGAAGATAGAGGGTGATTTGGAGAAGATGAGGCTAAAGGAAATGGAGAAAGTAAAAAACAAAGAGGCTGAGACTCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAGAGAGAGCACAAAAAGCAAAAGGTTGAAGAGAAAGCTGCCAAGCATAGGTCTTCCAATACAGTTCCAACCAAGTGTTTTGGCATTTGCCAAGACTAG

Protein sequence

MVAGSTSDQTKNELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKVKNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGICQD
Homology
BLAST of Lag0020012 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 8.5e-36
Identity = 91/119 (76.47%), Postives = 104/119 (87.39%), Query Frame = 0

Query: 5   STSDQTKNELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMR 64
           S +D+ K E+KI+ WEDREKIKA+NKAER+LASTEAWK++KK+ALEAEVKKI+ DL K+R
Sbjct: 8   SATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKIDADLVKLR 67

Query: 65  LKEMEKVKNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGICQD 124
           L+ MEKVKNKEAETHKAVESKKASIEAKRE KK KVE KA  HR +NTVP KCFGIC D
Sbjct: 68  LRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKCFGICND 126

BLAST of Lag0020012 vs. NCBI nr
Match: XP_004140777.2 (remorin [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-27
Identity = 78/100 (78.00%), Postives = 90/100 (90.00%), Query Frame = 0

Query: 5   STSDQTKNELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMR 64
           S +D+ K E+KI+ WEDREKIKA+NKAER+LASTEAWK++KK+ALEAEVKKI+ DL K+R
Sbjct: 8   SATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKIDADLVKLR 67

Query: 65  LKEMEKVKNKEAETHKAVESKKASIEAKREHKKQKVEEKA 105
           L+ MEKVKNKEAETHKAVESKKASIEAKRE KK KVE KA
Sbjct: 68  LRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKA 107

BLAST of Lag0020012 vs. NCBI nr
Match: XP_011030105.1 (PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 0

Query: 12  NELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKV 71
           NE  IKAWED+EK K+ NKA R L+  + W+   K + EA+  KIE +LE +R  + EK+
Sbjct: 165 NERNIKAWEDKEKAKSANKARRMLSDIKTWEEKMKISHEAQTMKIEAELESIRQHKHEKI 224

Query: 72  KNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGICQD 124
           KN+EA+  KA+E KKA+I+A+ + K  ++ EKA KHRS+NT+P KCFGIC D
Sbjct: 225 KNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICTD 276

BLAST of Lag0020012 vs. NCBI nr
Match: XP_024438026.1 (uncharacterized protein LOC7484383 isoform X1 [Populus trichocarpa])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-18
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 12  NELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKV 71
           +E  IKAWED+EK K+ NKA+R L+  + W+   K + EA+  KIE +LE +R  + EK+
Sbjct: 165 HERNIKAWEDKEKAKSANKAQRMLSDIKTWEEKMKISHEAKTMKIEAELESIRQHKHEKI 224

Query: 72  KNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGICQD 124
           KN+EA+  KA+E KKA+I+A+ + K  ++ EKA KHRS+NT+P KCFGIC D
Sbjct: 225 KNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICAD 276

BLAST of Lag0020012 vs. NCBI nr
Match: PNT11038.2 (hypothetical protein POPTR_012G140900 [Populus trichocarpa])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-18
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 12  NELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKV 71
           +E  IKAWED+EK K+ NKA+R L+  + W+   K + EA+  KIE +LE +R  + EK+
Sbjct: 13  HERNIKAWEDKEKAKSANKAQRMLSDIKTWEEKMKISHEAKTMKIEAELESIRQHKHEKI 72

Query: 72  KNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGICQD 124
           KN+EA+  KA+E KKA+I+A+ + K  ++ EKA KHRS+NT+P KCFGIC D
Sbjct: 73  KNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICAD 124

BLAST of Lag0020012 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-18
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 16  IKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKVKNKE 75
           IKAWE+ EK K ENKAE+KL+S  +W++ KK+A+EAE+KK+E  LEK + + +E++KNK 
Sbjct: 97  IKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKI 156

Query: 76  AETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFG 120
           A+ HK  E K+A IEAKR  +  K EE AAK+R++ T P K FG
Sbjct: 157 AQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFG 200

BLAST of Lag0020012 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-17
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0

Query: 16  IKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKVKNKE 75
           IKAWE+ EK KAENKA++K+++  AW+++KK+ LEAE+KK+E  LEK + +  EK+KNK 
Sbjct: 93  IKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKI 152

Query: 76  AETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFGI 121
           A  HK  E K+A IEAKR     K EE AAK+R++ T P K  GI
Sbjct: 153 ALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGI 197

BLAST of Lag0020012 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 16  IKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKEMEKVKNKE 75
           ++AWE+ EK KAENKAE+K+A   AW+++KK+A+EA++KKIE  LEK + +  E++KNK 
Sbjct: 107 VRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKV 166

Query: 76  AETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFG 120
           A  HK  E ++A IEAKR     K EE AAK+R++  VP    G
Sbjct: 167 AAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCG 210

BLAST of Lag0020012 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-15
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 0

Query: 8   DQTKNELKIKAWEDREKIKAENKAERKLASTEAWKSTKKSALEAEVKKIEGDLEKMRLKE 67
           ++ K    IKAWE+ EK KAEN+A++K++   AW+++KK+A+EA+++KIE  LEK + + 
Sbjct: 77  EKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQY 136

Query: 68  MEKVKNKEAETHKAVESKKASIEAKREHKKQKVEEKAAKHRSSNTVPTKCFG 120
            EK+KNK A  HK  E K+A +EAK+  +  K EE  AK+R++  VP    G
Sbjct: 137 GEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCG 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57373.18.5e-3676.47hypothetical protein Csa_010046 [Cucumis sativus][more]
XP_004140777.25.6e-2778.00remorin [Cucumis sativus][more]
XP_011030105.12.1e-1851.79PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica][more]
XP_024438026.16.2e-1850.89uncharacterized protein LOC7484383 isoform X1 [Populus trichocarpa][more]
PNT11038.26.2e-1850.89hypothetical protein POPTR_012G140900 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
Q9FFA51.3e-1853.85Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1[more]
P937881.9e-1753.33Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
Q9M2D82.1e-1650.00Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P... [more]
O808375.1e-1544.64Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..109
NoneNo IPR availablePANTHERPTHR31775:SF31CARBOXY-TERMINAL REGION REMORINcoord: 8..119
NoneNo IPR availablePANTHERPTHR31775OS02G0117200 PROTEINcoord: 8..119
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 12..116
e-value: 2.6E-20
score: 72.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020012.1Lag0020012.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010033 response to organic substance
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0006950 response to stress