Lag0019990 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019990
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 6A-like
Locationchr5: 47229124 .. 47231721 (-)
RNA-Seq ExpressionLag0019990
SyntenyLag0019990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACGACGATTACAATGACCTCGACATGGGGTTCTCTCTCTAACTTCTTTTTTTCTCTATTTGAATGTTTTTTCTTCTCTTTCTTGAATCGTTTTTGTTCGTCTGGTCAAATGGTTTCTAGAAAATTTGTCAAATGCAAAACCCTAATTTCGAAACTAAGTTCGTTCTTTCAAGTTCAACTTGGTGTAGTATGGATTTGGAGCTGAATTTGTGAAGGAGAACATTCGGAATGATGAAATATCATTTAGGTGTTAGGAAGGAGATGCTATCACGTATCAGAACCAAACTTGAGTGTTCGATTCTGCATGAGTCTGGTTTTCTTTAGCTATAATCTTGTGATAAGGAACTTAAAGGAGTTATTTTGGCAAGTGCTTGCTTTTCTGATTGCCTACCTGCTCACCATACCAATTTTTAAGGTTTAAGCGTCTGCAATAATCTTAGATAGTGCCCCGTGACATCTTCAATTAGGGTTTTCTCCATAGGTAAAATTAATTGGCTTCTTCTGCACTTAGAAAGCATGGCTGCTGGAAAAATGTTCTTATTCAAAATTTCTAACTTTTTATTTTGGGAAAAGAAACAGAAAGAACTTCTTAATCAGATACCAAATTAAGTTTTTTACTGTTAACCGTCCCTGTAATCTTGCGGATCCTACAGCATAAGCCTTGGGATTTGAAAAGATGTTTACGAACTTAGGCTTATTATTGGATGCTTATATTATGGTGGTTTTACTTATTTGTTGGAAAATACATGTTTTCTTCATGAGTTAAAAGGAACTCTAATAACCTTTATCTTTATAATGGGTTGTTATGCCTAAGATTAAAACATTATGGGTTGAAGGATTGTTTTTAAAGCTTTTCTGCTAGAATCTTATTTGATTAGGATAGGCCTCTTGCTGCATATGTATCACAAAATCTTCATCAGCTACTACCACAGATTATGGAGTATTATGAGTTCTTCAAAGTAGGCTTCTATTCACATTATGCCCTGTTTTTTGTGCCCCTTTCCTATTTGCCTAAAGGACACAGCCCTGCTTCTAGAATACAGTTAATTCATCATATTGCTGTACCAGCTGTGTTTTTTTTTTTTTTTATTTTATGGATTTTATCTGTTTATTTAGCCACTGATATACGTGTTTAGTGTTTTGCATCACATTTTCACACGTTTGTCCTTATTTGGGTTAAGAAGTTTTATTAATTAAGAAAAATGTACACAAGGAAAGCAGATAGATGGAGTATAGTTGCAAAATTCTATGGATGAGTACTTGAAATCCAACTCCTGGGCTACATATTTGCTATTTGTACTAAATATACTAAATACTCCATTCTTAGCTGTAGCTTTGCCACACTGGTAGTATCTTGGTTCGTGAAAGGCCTTTATGTTTTCATCTAGAACAATTGGAAGGTACAAATATGTTTCAGCTTTTTTATTAGTAAGTGGTTTTTGCTGCAGATATGAAGATGAGCCACCAGAACCAGAGATTGAGGTAAGAAATAACTAGTTTGATTCTCTTTGAAAGGAAGCAGATAACTGTTATTTTTTAAGTTGATTTATTATAGTGGAACTGTGAATGATGTACAGGAAGGTGCTGAAGAAGAATTGGATAATGCTAACAATGATGATGTTCCTGGCGAACCTGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGGTTCTCTTAAAATTTGTTACATCCAAATTTTTACTTGTCATCAAATTGATAAATTGCATGATGATTCTTTTTCCTTTTGGGCAGCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGGTAAGATTCTTAAATGTGAAGCTAAAATCATTGAAAAGCTCTCTTTTTGTTTTCACTATCAGTAGATGTATACGTTGTTCCATATGTGCATGCCATGGTTAGTACGCCTACTCAAAAGTAAAAGGTAATTTAAATCATCCAAAAATGCCCCTGAACTTTGAGGTTGGGGGTTAAAATGAAACCTTTCAAACAATAGGGTATAATTGAAACCAACGTTGAAGTTTAAAGGCAATTTGTATAAAGATATTGTTTATAGTTTCAATCGATCCGTGCTGGACCCAAAGAAATATGTAGGATGCCATTCATGGGTTCGGCTTAGAACTGTAATAGCTCATGCTTTTCTATCGAATGAAGATTTATGCTTGTCAATCTTGAGTGCTTTGCATTCTTTTGGTCGAGTGTGGCATTATTCTGAGTTCTGACGTCTCATCTAATTCTGTACTGTCTTAGATTGCAATGAAGGAGCTTCGTGAACGGAAGATACCCTTCACCATCCGTCGCTACCTGCCTGATGGAAGGTTTGTCTCCGGATTTTTGCCGAAACCAAATCAAATAGAACACTCTAGTTTTCTGGAAGGTAAGATAAAATGCTTAACAAGTGAATCCTCTCTCTCTCTCTCTCTCCATTTTGTACAGCTATGAAGACTGGGGCGTTGATGAACTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

mRNA sequence

ATGGCGGACGACGATTACAATGACCTCGACATGGGATATGAAGATGAGCCACCAGAACCAGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATGCTAACAATGATGATGTTCCTGGCGAACCTGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAACGGAAGATACCCTTCACCATCCGTCGCTACCTGCCTGATGGAAGCTATGAAGACTGGGGCGTTGATGAACTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

Coding sequence (CDS)

ATGGCGGACGACGATTACAATGACCTCGACATGGGATATGAAGATGAGCCACCAGAACCAGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATGCTAACAATGATGATGTTCCTGGCGAACCTGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAACGGAAGATACCCTTCACCATCCGTCGCTACCTGCCTGATGGAAGCTATGAAGACTGGGGCGTTGATGAACTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

Protein sequence

MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Homology
[Close]
BLAST of Lag0019990 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGY+DEPPEPE+EEGAEEELDN NNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]
BLAST of Lag0019990 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 6.2e-70
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]
BLAST of Lag0019990 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPE+EEGAEEELDN NNDDV GEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]
BLAST of Lag0019990 vs. NCBI nr
Match: TYK31441.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-69
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELD  NNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 142

[Close]
BLAST of Lag0019990 vs. NCBI nr
Match: XP_008466421.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-69
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELD  NNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 76  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-TNNDDVPGEPVEAEEKEDEEPVERVRKT 135

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 136 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 195

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 196 SYEDWGVDELIVEDSWKRQVGGA 217

[Close]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-61
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRK 60
           MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEP+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-58
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNANNDDVPGEPVEAEEKEDEEPVERVRK 60
           MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

[Close]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 21  EIEEGAEEELDNANNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQ 80
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 81  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 21  EIEEGAEEELDNANNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQ 80
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 81  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match: P61217 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 21  EIEEGAEEELDNANNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQ 80
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 81  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

The following BLAST results are available for this feature:
BLAST of Lag0019990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923151.11.2e-7097.90DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >... [more]
XP_008439178.16.2e-7097.20PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo][more]
XP_022141284.11.1e-6997.90DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia][more]
TYK31441.12.3e-6998.60DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. mak... [more]
XP_008466421.12.3e-6998.60PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis me... [more]
BLAST of Lag0019990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJ984.2e-6183.92DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=... [more]
Q9SJ961.5e-5882.52DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702... [more]
P612191.6e-2863.48DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10... [more]
O888281.6e-2863.48DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ... [more]
P612172.1e-2863.48DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/K/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 58..111
e-value: 4.7E-6
score: 36.1
IPR006110RNA polymerase, subunit omega/K/RPB6PFAMPF01192RNA_pol_Rpb6coord: 60..111
e-value: 6.0E-16
score: 58.1
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..134
e-value: 1.8E-55
score: 184.8
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..134
e-value: 1.8E-48
score: 162.1
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 62..117
score: 18.504309
IPR012293RNA polymerase subunit, RPB6/omegaGENE3D3.90.940.10coord: 3..134
e-value: 1.7E-50
score: 172.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availablePANTHERPTHR10773:SF16DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6Bcoord: 1..142
NoneNo IPR availablePANTHERPTHR10773DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2coord: 1..142
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 65..79
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019990.1Lag0019990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0005666 RNA polymerase III complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity