Lag0019935 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019935
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Zinc transporter 10
Location	chr5: 46824929 .. 46825360 (-)
RNA-Seq Expression	Lag0019935
Synteny	Lag0019935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCACTTCTCAAGCTCATTTCTGTCTTCAGCTTCACCTTCCTTATCTGCTTTTTAACAGTCCAGGCTGTTTCACAATGTGAAACCGCAGTCAACAAGTGCATTGATACAGACGAAGCTTTGCGTCTTGAAATCATTGCCATTTTTGCAATCCTCGTTGCTAGTGTGATTGGAGTTAACTCACCACTACTCACCCGATCAATCCCAACATTGCATCCTGACAGAAACTTGTTTATCATTCTCAAATCCTTCGCAGCAGGCATCATTCTCGCTACTGGTTTCATGCATGTTTTGCCAGGCTCTTTCAGCATGCTTTCATCAAATTGTTTGAAAGAGAATCCATGGCACAAGTTTCCCTTTTCGGATTGTCTCCATGATGTCTGTAATCATCACTCTCATGGTGGATTCCATGGCTACAAGTATCTATAG

mRNA sequence

ATGCGATCACTTCTCAAGCTCATTTCTGTCTTCAGCTTCACCTTCCTTATCTGCTTTTTAACAGTCCAGGCTGTTTCACAATGTGAAACCGCAGTCAACAAGTGCATTGATACAGACGAAGCTTTGCGTCTTGAAATCATTGCCATTTTTGCAATCCTCGTTGCTAGTGTGATTGGAGTTAACTCACCACTACTCACCCGATCAATCCCAACATTGCATCCTGACAGAAACTTGTTTATCATTCTCAAATCCTTCGCAGCAGGCATCATTCTCGCTACTGGTTTCATGCATGTTTTGCCAGGCTCTTTCAGCATGCTTTCATCAAATTGTTTGAAAGAGAATCCATGGCACAAGTTTCCCTTTTCGGATTGTCTCCATGATGTCTGTAATCATCACTCTCATGGTGGATTCCATGGCTACAAGTATCTATAG

Coding sequence (CDS)

ATGCGATCACTTCTCAAGCTCATTTCTGTCTTCAGCTTCACCTTCCTTATCTGCTTTTTAACAGTCCAGGCTGTTTCACAATGTGAAACCGCAGTCAACAAGTGCATTGATACAGACGAAGCTTTGCGTCTTGAAATCATTGCCATTTTTGCAATCCTCGTTGCTAGTGTGATTGGAGTTAACTCACCACTACTCACCCGATCAATCCCAACATTGCATCCTGACAGAAACTTGTTTATCATTCTCAAATCCTTCGCAGCAGGCATCATTCTCGCTACTGGTTTCATGCATGTTTTGCCAGGCTCTTTCAGCATGCTTTCATCAAATTGTTTGAAAGAGAATCCATGGCACAAGTTTCCCTTTTCGGATTGTCTCCATGATGTCTGTAATCATCACTCTCATGGTGGATTCCATGGCTACAAGTATCTATAG

Protein sequence

MRSLLKLISVFSFTFLICFLTVQAVSQCETAVNKCIDTDEALRLEIIAIFAILVASVIGVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKFPFSDCLHDVCNHHSHGGFHGYKYL

Homology

[Close]

BLAST of Lag0019935 vs. NCBI nr
Match: XP_008459065.1 (PREDICTED: fe(2+) transport protein 1 [Cucumis melo] >KAA0043256.1 fe(2+) transport protein 1 [Cucumis melo var. makuwa] >TYK29320.1 fe(2+) transport protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.6e-41
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MRSLLKLISVFSFTFLICFLTVQAVSQ---CETAVNKCIDTDEALRLEIIAIFAILVASV 60
           M S  KLIS+  F FL+CFL++QAVSQ   CET VN C +  +ALRL+IIAIF+IL+ASV
Sbjct: 1   MASFTKLISI--FLFLLCFLSIQAVSQSDECETTVNSCTNKGKALRLKIIAIFSILIASV 60

Query: 61  IGVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWH 120
           IGV SPL+TRSIP LHPDRN+F+ILK+FAAGIILATGFMHVLP SF ML SNCLKENPWH
Sbjct: 61  IGVGSPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWH 120

Query: 121 KFPFS 123
           KFPFS
Sbjct: 121 KFPFS 123

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BLAST of Lag0019935 vs. NCBI nr
Match: XP_022142414.1 (fe(2+) transport protein 1-like [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-40
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 3   SLLKLISVFSFTFLICFLTVQAVSQ---CETAVNKCIDTDEALRLEIIAIFAILVASVIG 62
           S LKLIS+    FL+CF T QAVSQ   C T  N+C + D+ALRL+IIAIF+ILVASVIG
Sbjct: 5   SFLKLISI--LFFLVCFFTTQAVSQSDECVTTANECTNKDKALRLKIIAIFSILVASVIG 64

Query: 63  VNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKF 122
           V SPL+TRSIP LHPDRNLFIILKSFAAGIILATGFMHVLP SF ML S+CLKENPWHKF
Sbjct: 65  VGSPLVTRSIPXLHPDRNLFIILKSFAAGIILATGFMHVLPDSFDMLWSSCLKENPWHKF 124

[Close]

BLAST of Lag0019935 vs. NCBI nr
Match: XP_038894945.1 (fe(2+) transport protein 1-like [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-40
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MRSLLKLISVFSFTFLICFLTVQAVSQ---CETAVNKCIDTDEALRLEIIAIFAILVASV 60
           M S  KLIS+  F FLICFLT QAVSQ   CET  N C + D+AL L+IIAIF+IL+ASV
Sbjct: 1   MASFTKLISI--FFFLICFLTTQAVSQSGECETTNNSCTNKDKALHLKIIAIFSILIASV 60

Query: 61  IGVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWH 120
           IGV SPL+TRSIP LHPDRN+FIILK+FAAGIILATGFMHVLP SF ML SNCL++NPWH
Sbjct: 61  IGVGSPLVTRSIPMLHPDRNMFIILKAFAAGIILATGFMHVLPDSFDMLWSNCLQDNPWH 120

Query: 121 KFPFS 123
           KFPFS
Sbjct: 121 KFPFS 123

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BLAST of Lag0019935 vs. NCBI nr
Match: XP_031736579.1 (fe(2+) transport protein 1 isoform X2 [Cucumis sativus] >KAE8653670.1 hypothetical protein Csa_007081 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.3e-39
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MRSLLKLISVFSFTFLICFLTVQAVSQ---CETAVNKCIDTDEALRLEIIAIFAILVASV 60
           M S  K  S+  F FLICF ++QAVSQ   CET  N C +  +ALRL+IIAIF+IL+ASV
Sbjct: 1   MASFTKPFSI--FLFLICFFSIQAVSQSDECETTANSCTNKHKALRLKIIAIFSILIASV 60

Query: 61  IGVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWH 120
           IGV SPL+TRSIP LHPDRN+F+ILK+FAAGIILATGFMHVLP SF ML SNCLKENPWH
Sbjct: 61  IGVGSPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWH 120

Query: 121 KFPFS 123
           KFPFS
Sbjct: 121 KFPFS 123

[Close]

BLAST of Lag0019935 vs. NCBI nr
Match: XP_004145454.1 (fe(2+) transport protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.3e-39
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MRSLLKLISVFSFTFLICFLTVQAVSQ---CETAVNKCIDTDEALRLEIIAIFAILVASV 60
           M S  K  S+  F FLICF ++QAVSQ   CET  N C +  +ALRL+IIAIF+IL+ASV
Sbjct: 1   MASFTKPFSI--FLFLICFFSIQAVSQSDECETTANSCTNKHKALRLKIIAIFSILIASV 60

Query: 61  IGVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWH 120
           IGV SPL+TRSIP LHPDRN+F+ILK+FAAGIILATGFMHVLP SF ML SNCLKENPWH
Sbjct: 61  IGVGSPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWH 120

Query: 121 KFPFS 123
           KFPFS
Sbjct: 121 KFPFS 123

[Close]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot
Match: Q8S3W4 (Probable zinc transporter 8 OS=Arabidopsis thaliana OX=3702 GN=ZIP8 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 10  VFSFTFLICFLTVQAVS----QCET-AVNKCIDTDEALRLEIIAIFAILVASVIGVNSPL 69
           +F    LI F    A+S    +CET + + CID  +AL L+I+AI AILV S+IGV +PL
Sbjct: 11  IFLVLLLISFAISPAISTVPKECETDSTDSCIDKTKALPLKIVAIVAILVTSMIGVAAPL 70

Query: 70  LTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKFPFS 123
            +R +  LHPD  +F+I+K FA+GIIL TGFMHVLP SF MLSS CL++NPWHKFPF+
Sbjct: 71  FSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFT 128

[Close]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot
Match: Q38856 (Fe(2+) transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=IRT1 PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-27
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 7   LISVFSFTFLICFLTVQAVSQC-ETAVNKCIDTDEALRLEIIAIFAILVASVIGVNSPLL 66
           L+ +F  +F I   T  A  +C   + N C++  +AL L++IAIF IL+AS+IGV +PL 
Sbjct: 14  LVLIF-VSFAISPATSTAPEECGSESANPCVNKAKALPLKVIAIFVILIASMIGVGAPLF 73

Query: 67  TRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKFPFSDCL 126
           +R++  L PD N+F I+K FA+GIIL TGFMHVLP SF MLSS CL+ENPWHKFPFS  L
Sbjct: 74  SRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFL 132

[Close]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot
Match: Q8W245 (Probable zinc transporter 10 OS=Arabidopsis thaliana OX=3702 GN=ZIP10 PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 23  QAVSQCETAVN-KCIDTDEALRLEIIAIFAILVASVIGVNSPLLTRSIPTLHPDRNLFII 82
           Q+   C++  N  CID ++AL L++++IF+IL+ S+IGV  P   RSIP   P+++ F+I
Sbjct: 29  QSNKDCQSKSNYSCIDKNKALDLKLLSIFSILITSLIGVCLPFFARSIPAFQPEKSHFLI 88

Query: 83  LKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKFPFS 123
           +KSFA+GIIL+TGFMHVLP SF MLSS CL +NPWHKFPF+
Sbjct: 89  VKSFASGIILSTGFMHVLPDSFEMLSSPCLNDNPWHKFPFA 129

[Close]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot
Match: O81850 (Fe(2+) transport protein 2 OS=Arabidopsis thaliana OX=3702 GN=IRT2 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 5   LKLISVFSFTFLICFLTVQAVSQCETAV-NKCIDTDEALRLEIIAIFAILVASVIGVNSP 64
           L  I +  FTF +      A   C++   N CI+  +AL L+I+AI AIL  S+IGV SP
Sbjct: 6   LVYILLILFTFTVSPAISTAPEHCDSGFDNPCINKAKALPLKIVAIVAILTTSLIGVTSP 65

Query: 65  LLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHKFPFS 123
           L +R I  L PD N F+I+K F++GIIL TGFMHVLP SF MLSS CL +NPWHKFPF+
Sbjct: 66  LFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFA 124

[Close]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot
Match: Q8W246 (Zinc transporter 7 OS=Arabidopsis thaliana OX=3702 GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-23
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 5   LKLISVFSFTFLICFLTVQA----VSQC--ETAVNKCIDTDEALRLEIIAIFAILVASVI 64
           L  I++   +F +  L   A    VS+C  E+    C +  EA +L+IIAI +ILVAS+I
Sbjct: 10  LTTITILLLSFTLPSLAGNAENADVSECKAESGDLSCHNNKEAQKLKIIAIPSILVASMI 69

Query: 65  GVNSPLLTRSIPTLHPDRNLFIILKSFAAGIILATGFMHVLPGSFSMLSSNCLKENPWHK 123
           GV+ PL +RSIP L PDR + +I+K+ A+G+ILATGFMHVLP SF  L+S CL E+PW K
Sbjct: 70  GVSLPLFSRSIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPEDPWQK 129

The following BLAST results are available for this feature:

BLAST of Lag0019935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459065.1	4.6e-41	74.40	PREDICTED: fe(2+) transport protein 1 [Cucumis melo] >KAA0043256.1 fe(2+) transp...	[more]
XP_022142414.1	5.1e-40	76.42	fe(2+) transport protein 1-like [Momordica charantia]	[more]
XP_038894945.1	5.1e-40	74.40	fe(2+) transport protein 1-like [Benincasa hispida]	[more]
XP_031736579.1	4.3e-39	72.00	fe(2+) transport protein 1 isoform X2 [Cucumis sativus] >KAE8653670.1 hypothetic...	[more]
XP_004145454.1	4.3e-39	72.00	fe(2+) transport protein 1 isoform X1 [Cucumis sativus]	[more]

BLAST of Lag0019935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S3W4	7.9e-28	55.93	Probable zinc transporter 8 OS=Arabidopsis thaliana OX=3702 GN=ZIP8 PE=3 SV=1	[more]
Q38856	1.8e-27	55.00	Fe(2+) transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=IRT1 PE=1 SV=2	[more]
Q8W245	1.5e-26	56.44	Probable zinc transporter 10 OS=Arabidopsis thaliana OX=3702 GN=ZIP10 PE=1 SV=2	[more]
O81850	2.2e-25	53.78	Fe(2+) transport protein 2 OS=Arabidopsis thaliana OX=3702 GN=IRT2 PE=1 SV=1	[more]
Q8W246	4.5e-23	50.81	Zinc transporter 7 OS=Arabidopsis thaliana OX=3702 GN=ZIP7 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003689	Zinc/iron permease	PFAM	PF02535	Zip	coord: 44..122 e-value: 2.9E-16 score: 59.6
None	No IPR available	PANTHER	PTHR11040:SF48	ZINC TRANSPORTER 10-RELATED	coord: 15..123
None	No IPR available	PANTHER	PTHR11040	ZINC/IRON TRANSPORTER	coord: 15..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019935.1	Lag0019935.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071577	zinc ion transmembrane transport
biological_process	GO:0030001	metal ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005385	zinc ion transmembrane transporter activity
molecular_function	GO:0046873	metal ion transmembrane transporter activity