Lag0019859 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019859
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRho-GAP domain-containing protein
Locationchr5: 46128692 .. 46129661 (-)
RNA-Seq ExpressionLag0019859
SyntenyLag0019859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTCGTAGTCTTGCTATGGAGATGACTCCTATAATAATGTGGCAAAAGGACAGGCGGCCGGAGTTCTATCGGGAGTATTGGGATTATCATTCTAACAGTTCCTCTGCAAAGTCCTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGGTAACTATGCCAATCCTTGCTGTTTGATTGCTTGCTATGTACTTTATTTTAGTGCCACATAATTGGAAATGGATCTCGATTTTTCCTCTTTTGGAATGGGCATTTCAGTCACAAGCGTTGGAACGAGAATGATAATGATCAATAATATTTTTCATTTACTCATTGATAGATGATAGACAACTTGAAGTGTGCAAAAGGACCTATCACCTTTGTATTGTATGCAAATAATTCTACCTAGTCAATAAAAATTTCCTGTGACTATTGTCTTAAATACGTTCAACTGAGGAAATATGGAGGGTTATGTAGTGAGGATTGGGCAAATTCCAATGTTTACCCTGCATTTTAGTTTTTGTAGCTTAGGTTGTTTACTGTACATGGGTTTGCTGTTTATTCTTTAGCTTTAGTAGTTTGTGGTTTATTAGAAGCTCTTATGAAGAATATGATGTTCTGTCTCTGTAACCAGCACTTTTTATATATAGAATAAAGGGCTCTTTGAGCATTCTTGCAGCGAATACTTAGTCTGCATCAGTTTAAAAAGTGAGTAGGGACATTTTGAACCACTTAGAGAAATCAACACATATACTGTTCAAAACTATCCGTGATTGTTCTTTTGATGGTCCCCTAGGATAATTCTCACTATTTTGTTTTTGGTCTGCAGAAGAGAGTGATGATACAGATGCTTCTTCTCACATTCCTTTGGATGATGCCATGCCAGTTGACTTCAGTGCCATTGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAGTTTTTACTGATGCTAATGAAACAATTTGGAGATAA

mRNA sequence

ATGGATTCTCGTAGTCTTGCTATGGAGATGACTCCTATAATAATGTGGCAAAAGGACAGGCGGCCGGAGTTCTATCGGGAGTATTGGGATTATCATTCTAACAGTTCCTCTGCAAAGTCCTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGAAGAGAGTGATGATACAGATGCTTCTTCTCACATTCCTTTGGATGATGCCATGCCAGTTGACTTCAGTGCCATTGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAGTTTTTACTGATGCTAATGAAACAATTTGGAGATAA

Coding sequence (CDS)

ATGGATTCTCGTAGTCTTGCTATGGAGATGACTCCTATAATAATGTGGCAAAAGGACAGGCGGCCGGAGTTCTATCGGGAGTATTGGGATTATCATTCTAACAGTTCCTCTGCAAAGTCCTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGAAGAGAGTGATGATACAGATGCTTCTTCTCACATTCCTTTGGATGATGCCATGCCAGTTGACTTCAGTGCCATTGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAGTTTTTACTGATGCTAATGAAACAATTTGGAGATAA

Protein sequence

MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR
Homology
[Close]
BLAST of Lag0019859 vs. NCBI nr
Match: XP_038876295.1 (uncharacterized Rho GTPase-activating protein At5g61530 [Benincasa hispida] >XP_038876302.1 uncharacterized Rho GTPase-activating protein At5g61530 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MD+RSL+MEMTPIIMWQ D+RPEFYREYWDYHS SSSAKSLNNTPPTYSAWDMLSEESDD
Sbjct: 277 MDARSLSMEMTPIIMWQNDKRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDD 336

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
           TDASSHIPLDDA+PVDFSA+EVIQCLIEHHNE+FTDANETIWR
Sbjct: 337 TDASSHIPLDDAIPVDFSAVEVIQCLIEHHNEIFTDANETIWR 379

[Close]
BLAST of Lag0019859 vs. NCBI nr
Match: KAE8649137.1 (hypothetical protein Csa_014662 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MD+RSL+MEMTPIIMWQ DRRPEFYREYWDYHS SSSAKSLNNTPPTYSAWDMLSEESDD
Sbjct: 277 MDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDD 336

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
           TDASSHIPLDD +PVDF+A+EV+QCLIEHHNE+FTDANETIWR
Sbjct: 337 TDASSHIPLDDGVPVDFNAVEVVQCLIEHHNEIFTDANETIWR 379

[Close]
BLAST of Lag0019859 vs. NCBI nr
Match: XP_011653076.1 (uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis sativus] >XP_031739569.1 uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MD+RSL+MEMTPIIMWQ DRRPEFYREYWDYHS SSSAKSLNNTPPTYSAWDMLSEESDD
Sbjct: 281 MDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDD 340

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
           TDASSHIPLDD +PVDF+A+EV+QCLIEHHNE+FTDANETIWR
Sbjct: 341 TDASSHIPLDDGVPVDFNAVEVVQCLIEHHNEIFTDANETIWR 383

[Close]
BLAST of Lag0019859 vs. NCBI nr
Match: KAA0044664.1 (putative Rho GTPase-activating protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MD+RSL+MEMTPIIMWQ DRRPEFYREYWDYHS SSSAKSLNNTPPTYSAWDMLSEESDD
Sbjct: 281 MDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDD 340

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
           TDASSHIPLDD +PVDFSA+EVI CLIEHHNE+FTDANETIWR
Sbjct: 341 TDASSHIPLDDGIPVDFSAVEVIHCLIEHHNEIFTDANETIWR 383

[Close]
BLAST of Lag0019859 vs. NCBI nr
Match: XP_016901517.1 (PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MD+RSL+MEMTPIIMWQ DRRPEFYREYWDYHS SSSAKSLNNTPPTYSAWDMLSEESDD
Sbjct: 281 MDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDD 340

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
           TDASSHIPLDD +PVDFSA+EVI CLIEHHNE+FTDANETIWR
Sbjct: 341 TDASSHIPLDDGIPVDFSAVEVIHCLIEHHNEIFTDANETIWR 383

[Close]
BLAST of Lag0019859 vs. ExPASy Swiss-Prot
Match: Q3E875 (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana OX=3702 GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-29
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 0 

Query: 1   MDSRSLAMEMTPIIMWQKDRRPEFYREYWDYHSNSSSAKSLNNTPPTYSAWDMLSEESDD 60
           MDS SLAMEM P+IMW++D RPE YREYW   S S      +N   T + WD+LS+E + 
Sbjct: 277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKK---SNDFETATPWDLLSDEGEG 336

Query: 61  TDASSHIPLDDAMPVDFSAIEVIQCLIEHHNEVFTDANETIWR 104
            DASS IPLDD   VDF A+EV+QCLIEHHN +FTDA ET+WR
Sbjct: 337 PDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

The following BLAST results are available for this feature:
BLAST of Lag0019859 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876295.11.1e-4992.23uncharacterized Rho GTPase-activating protein At5g61530 [Benincasa hispida] >XP_... [more]
KAE8649137.14.3e-4990.29hypothetical protein Csa_014662 [Cucumis sativus][more]
XP_011653076.14.3e-4990.29uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis sativus] >XP_03... [more]
KAA0044664.15.6e-4991.26putative Rho GTPase-activating protein [Cucumis melo var. makuwa][more]
XP_016901517.15.6e-4991.26PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis melo... [more]
BLAST of Lag0019859 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E8758.8e-2960.19Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47367:SF1AUXIN-REGULATED PROTEIN-LIKEcoord: 1..103
NoneNo IPR availablePANTHERPTHR47367AUXIN-REGULATED PROTEIN-LIKEcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019859.1Lag0019859.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction