Lag0019381 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019381
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr5: 41637390 .. 41637992 (+)
RNA-Seq Expression	Lag0019381
Synteny	Lag0019381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCTTCTTCCGCAGCTTCTGAGGCAATTTTCGGTAGCAACCTCCAGTCCAATACCTTCATCTTCCTACTATCAAATATATGTAATCTGGTTCCAGTGAGGCTGGACTCTTCAAATTACCTTTTCTGGAGATTCCAGGTTGAGTCAATGCTTAGGGCTCACTCCCTCTTTGACATTGTTGATGGATCGAACAAATGCCCGCCCAAATATCTGCGCGAGGGTGATAACAATCTTCTCTCTGAAATTAATCCTGTTTATTCTCTCTGGATTGCTCAAGATCGCGCCCTTATCACATTGATTAACGCCACACTTTCGAAAGCCGCCTTCTCCTTTGTTATCGGTTGTACGTCTTCACAGGAGGTATGGACTGCTCTTGGAAAACGTTTTTCATCACTTACTCGTTCTCACATCCACGAACTCAAGTCAGCGTTGCACACTGTATCTAAGGGTTCTACAGAATCTATTGATGATTATCTGATCCGAATTAAAGAGATAGTTGATAAGTTGGCGACAGTCTCTGTCAAGATTGATGATGAAGATATTCTTCTCTACACACTGAAGTATCTGTCACTCTCGATGAACTTCATGCTCTATTGA

mRNA sequence

ATGGCGTCCTCTTCTTCCGCAGCTTCTGAGGCAATTTTCGGTAGCAACCTCCAGTCCAATACCTTCATCTTCCTACTATCAAATATATGTAATCTGGTTCCAGTGAGGCTGGACTCTTCAAATTACCTTTTCTGGAGATTCCAGGTTGAGTCAATGCTTAGGGCTCACTCCCTCTTTGACATTGTTGATGGATCGAACAAATGCCCGCCCAAATATCTGCGCGAGGGTGATAACAATCTTCTCTCTGAAATTAATCCTGTTTATTCTCTCTGGATTGCTCAAGATCGCGCCCTTATCACATTGATTAACGCCACACTTTCGAAAGCCGCCTTCTCCTTTGTTATCGGTTGTACGTCTTCACAGGAGGTATGGACTGCTCTTGGAAAACGTTTTTCATCACTTACTCGTTCTCACATCCACGAACTCAAGTCAGCGTTGCACACTGTATCTAAGGGTTCTACAGAATCTATTGATGATTATCTGATCCGAATTAAAGAGATAGTTGATAAGTTGGCGACAGTCTCTGTCAAGATTGATGATGAAGATATTCTTCTCTACACACTGAAGTATCTGTCACTCTCGATGAACTTCATGCTCTATTGA

Coding sequence (CDS)

ATGGCGTCCTCTTCTTCCGCAGCTTCTGAGGCAATTTTCGGTAGCAACCTCCAGTCCAATACCTTCATCTTCCTACTATCAAATATATGTAATCTGGTTCCAGTGAGGCTGGACTCTTCAAATTACCTTTTCTGGAGATTCCAGGTTGAGTCAATGCTTAGGGCTCACTCCCTCTTTGACATTGTTGATGGATCGAACAAATGCCCGCCCAAATATCTGCGCGAGGGTGATAACAATCTTCTCTCTGAAATTAATCCTGTTTATTCTCTCTGGATTGCTCAAGATCGCGCCCTTATCACATTGATTAACGCCACACTTTCGAAAGCCGCCTTCTCCTTTGTTATCGGTTGTACGTCTTCACAGGAGGTATGGACTGCTCTTGGAAAACGTTTTTCATCACTTACTCGTTCTCACATCCACGAACTCAAGTCAGCGTTGCACACTGTATCTAAGGGTTCTACAGAATCTATTGATGATTATCTGATCCGAATTAAAGAGATAGTTGATAAGTTGGCGACAGTCTCTGTCAAGATTGATGATGAAGATATTCTTCTCTACACACTGAAGTATCTGTCACTCTCGATGAACTTCATGCTCTATTGA

Protein sequence

MASSSSAASEAIFGSNLQSNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMNFMLY

Homology

[Close]

BLAST of Lag0019381 vs. NCBI nr
Match: KAA8537769.1 (hypothetical protein F0562_027652 [Nyssa sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. NCBI nr
Match: KAA8524269.1 (hypothetical protein F0562_010692 [Nyssa sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. NCBI nr
Match: KAA8516701.1 (hypothetical protein F0562_016793 [Nyssa sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. NCBI nr
Match: KAA8519786.1 (hypothetical protein F0562_014124 [Nyssa sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. NCBI nr
Match: KAA8523789.1 (hypothetical protein F0562_010212 [Nyssa sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. ExPASy TrEMBL
Match: A0A5J5A0G3 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010212 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. ExPASy TrEMBL
Match: A0A5J5B4Y2 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_027652 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. ExPASy TrEMBL
Match: A0A5J4ZHB6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_016793 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. ExPASy TrEMBL
Match: A0A5J5A1U7 (Integrase catalytic domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010692 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

[Close]

BLAST of Lag0019381 vs. ExPASy TrEMBL
Match: A0A5J4ZPW7 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_014124 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 19  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDN 78
           S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++   
Sbjct: 44  SQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGTYPCPNKFVQDERG 103

Query: 79  NLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCTSSQEVWTALGKRFSSLTRSH 138
              ++INP Y +W  QD+AL+TL+NATLS+ A S VIG ++S+E W AL +RFS+ TRS+
Sbjct: 104 AATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALERRFSASTRSN 163

Query: 139 IHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN 197
           I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Sbjct: 164 ILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYN 220

The following BLAST results are available for this feature:

BLAST of Lag0019381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8537769.1	6.2e-44	53.93	hypothetical protein F0562_027652 [Nyssa sinensis]	[more]
KAA8524269.1	6.2e-44	53.93	hypothetical protein F0562_010692 [Nyssa sinensis]	[more]
KAA8516701.1	6.2e-44	53.93	hypothetical protein F0562_016793 [Nyssa sinensis]	[more]
KAA8519786.1	6.2e-44	53.93	hypothetical protein F0562_014124 [Nyssa sinensis]	[more]
KAA8523789.1	6.2e-44	53.93	hypothetical protein F0562_010212 [Nyssa sinensis]	[more]

BLAST of Lag0019381 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0019381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5A0G3	3.0e-44	53.93	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5B4Y2	3.0e-44	53.93	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J4ZHB6	3.0e-44	53.93	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_016793 PE=4 SV=1	[more]
A0A5J5A1U7	3.0e-44	53.93	Integrase catalytic domain-containing protein OS=Nyssa sinensis OX=561372 GN=F05...	[more]
A0A5J4ZPW7	3.0e-44	53.93	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]

BLAST of Lag0019381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 91..194 e-value: 7.6E-14 score: 51.7
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 19..184
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 19..184
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 31..69 e-value: 2.1E-6 score: 27.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019381.1	Lag0019381.1	mRNA