Lag0018942 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018942
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA cross-link repair 1A protein
Locationchr5: 36817854 .. 36819906 (-)
RNA-Seq ExpressionLag0018942
SyntenyLag0018942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAATCTGCATTCGCAACTGGATGAAGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGTTTTTCCGGTGGATGAAGAAGGTCTGATTCAATGTCCTCTATGTGGGGTTGATATTTCTGATCTCAGTGACGAGCAACGTCTTGTACACACCAATGATTGTATCGACAAAGAGGATGCGTAAGCCCAATATGTGAGTCTAGATGATACGCTCTACAAATCTTTGAACCGTTTCTTGTTTGATGTTTTCTTTATAATTTTAAAATAAATGCAATTAGGTGCCTATATGTAATCGTTGCTCTTACCCAGGATGTACATTTCTTCTTGCTTTAGTATTTCCTGTTATTTTTCTATATGCCCGCTACTTGTAGGAACTTATAGGATGAGACTATTGAAAACTTCAGCTAAACGTTTTCTTTATTATTCACTTGTCCTTTTCTCTCTTAGCACATCCTCTGGAGTCTATAGACCGATTTTGGTTTGGCCTTTAGAGGAATTTGGGAGTGATGATGAGTATATTTTGATTTGTCTTTCACCTTTCATTTATTGGGGTTTTCTTTCGATTTTCATTTGTTTGGGGGGGGGGGGGTGAGTGGTATAGAGATTTTAGAAATTGTTTCTGTTCTTAAATTTTTCTTATTGCAAAAATCAACTTTTATCATATTTCTTCCGACCTTGGGTTAGATTTGAATTTATATTAAAAAAGCATATAACTGTAACCGTGAACTTTGAGACATTCAACAAGCTAGAGAGCTTCTAGAATTTCCAGATTTAAGTTCTTTGTGGTTATGATTATGATTCAAGATTGGGAGTCAAGATTATGATTTCAGATTATGATTTTTTATGCTTGTCAATGTGATTTCACAATAACCGTGAACTTTGGGAGTCAAGATTATGATTCCATCATCCAAGCAGGAAGAATTTGTTGGGAAGATTTCAGAATTCTATACATTTCATTTAACTTAATTACAAAATACGATGTTTGGTTTGTTGTATATAGTTTCTTTTTTTCTTTTTCTTTTTCTTTTTCTCATCACAAGATACGCTATTTTGTTCTCTTGTGGATGACTTTTATGATCAAATTGCTCCATTTTAATTGTTTCAAAATTAAATTTTCTCTTGTCACACCAAGGCTAAATTAATAACATTGTTATACGGTAAAATAAATCACTCTTTTTTCTACAAAGAAAAGAGATCAAGTATTGATCTTTAGAATAAACTCTCTGTTTGATAATCATTACAGTTATTGAAGGCAGTTCAGTTGATAGTGTAACCGAAGCTTCAGAAAAAATACAACCACTAATTGATGAGGTAAGTTGTCTATATTTATGCTTGTTTTAAAAAATATATTATGTTTAGTTCTTCCAATTTTCCGCTCTTCATTTTAGGACCTTTTATATGAGTCAATGTTAATGGTGTTGGTTTGATGAGAGTCCACTTTATTGCTGTTATATTTGCTTCTTTTTTGGGTTTTGTTGCTTCTACAGATCTAATGATATTCTTCTTGACTTTTTCCCCCTAACTGTTGTTCGGTAAAGGGCTCATGGCTTGCATATATCCTGTATGTTTTTTTTTTCTTTCCTTTTTAATGCTTTAAGAACATTGAGTAACATTTTATTTTCCCCTTCCATGAAAGAGTTGCTCTCAATTCTCTTCACTGTCTTATCTTCTAAGAAAATTTTCTGACTTCCATTGCTTTTGACAGACTTAGGAATTGACAAATCAATATTTATATAGCCCAGAACATTTCATCTAACAGTACTTATGTTCAAGTTGTGGAACAAGGAGCGAGTTGATGCTGCTTCTGAAGTTTTTAAGGTGATTATACTTGCTGGTTGGATATTTGTAGAGCTTGTGATGTGACAACTAGTCTTTTCTTTCAGGGTATCTCCTCTAAAATAATGGATGCATTGGAAAAAATGGGTTTTATTGAAGTTGGACGGGAGTGTTTATTCTCTCTCCCTGATTTCATTTCTCTTTTTCCCTCTTCCCAGGTCGTTTTGGTTGAGTTGGAGGTTGCGAAATACTTGGTTATGCTTTGA

mRNA sequence

ATGATTAATCTGCATTCGCAACTGGATGAAGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGTTTTTCCGGTGGATGAAGAAGGTCTGATTCAATGTCCTCTATGTGGGGTTGATATTTCTGATCTCAGTGACGAGCAACGTCTTGTACACACCAATGATTGTATCGACAAAGAGGATGCTTCAGTTGATAGTGTAACCGAAGCTTCAGAAAAAATACAACCACTAATTGATGAGTTGTGGAACAAGGAGCGAGTTGATGCTGCTTCTGAAGTTTTTAAGGTCGTTTTGGTTGAGTTGGAGGTTGCGAAATACTTGGTTATGCTTTGA

Coding sequence (CDS)

ATGATTAATCTGCATTCGCAACTGGATGAAGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGTTTTTCCGGTGGATGAAGAAGGTCTGATTCAATGTCCTCTATGTGGGGTTGATATTTCTGATCTCAGTGACGAGCAACGTCTTGTACACACCAATGATTGTATCGACAAAGAGGATGCTTCAGTTGATAGTGTAACCGAAGCTTCAGAAAAAATACAACCACTAATTGATGAGTTGTGGAACAAGGAGCGAGTTGATGCTGCTTCTGAAGTTTTTAAGGTCGTTTTGGTTGAGTTGGAGGTTGCGAAATACTTGGTTATGCTTTGA

Protein sequence

MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQPLIDELWNKERVDAASEVFKVVLVELEVAKYLVML
Homology
[Close]
BLAST of Lag0018942 vs. NCBI nr
Match: XP_023536639.1 (DNA cross-link repair 1A protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-24
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCID 60
           ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCID
Sbjct: 205 LLNLHSQLDEEDRISGVGFGTEESYFPVDED-LIQCPLCGVDISDLSDEQRLVHTNDCID 264

Query: 61  KEDASVDSVTEASEKIQ 78
           KEDA   +     +K Q
Sbjct: 265 KEDAQAQTTAHTPDKKQ 280

[Close]
BLAST of Lag0018942 vs. NCBI nr
Match: XP_022976980.1 (uncharacterized protein LOC111477185 isoform X2 [Cucurbita maxima])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCID 60
           ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCID
Sbjct: 209 LLNLHSQLDEEDRISGVGFGTEESYFPVDED-LIQCPLCGVDISDLSDEQRLVHTNDCID 268

Query: 61  KEDASVDSVTEASEKIQ 78
           KEDA   +     +K Q
Sbjct: 269 KEDAQAQTAALTPDKKQ 284

[Close]
BLAST of Lag0018942 vs. NCBI nr
Match: KAG6591500.1 (DNA cross-link repair 1A protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCID 60
           ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCID
Sbjct: 209 LLNLHSQLDEEDRISGVGFGTEESYFPVDED-LIQCPLCGVDISDLSDEQRLVHTNDCID 268

Query: 61  KEDASVDSVTEASEKIQ 78
           KEDA   +     +K Q
Sbjct: 269 KEDAQAQTAALTPDKKQ 284

[Close]
BLAST of Lag0018942 vs. NCBI nr
Match: XP_022976979.1 (DNA cross-link repair 1A protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCID 60
           ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCID
Sbjct: 209 LLNLHSQLDEEDRISGVGFGTEESYFPVDED-LIQCPLCGVDISDLSDEQRLVHTNDCID 268

Query: 61  KEDASVDSVTEASEKIQ 78
           KEDA   +     +K Q
Sbjct: 269 KEDAQAQTAALTPDKKQ 284

[Close]
BLAST of Lag0018942 vs. NCBI nr
Match: KAG7024385.1 (DNA cross-link repair 1A protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCID 60
           ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSD+QRLVHTNDCID
Sbjct: 209 LLNLHSQLDEEDRISGVGFGTEESYFPVDED-LIQCPLCGVDISDLSDDQRLVHTNDCID 268

Query: 61  KEDASVDSVTEASEKIQ 78
           KEDA   +     +K Q
Sbjct: 269 KEDAQAQTTAHTPDKKQ 284

The following BLAST results are available for this feature:
BLAST of Lag0018942 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023536639.18.9e-2476.62DNA cross-link repair 1A protein [Cucurbita pepo subsp. pepo][more]
XP_022976980.12.0e-2376.62uncharacterized protein LOC111477185 isoform X2 [Cucurbita maxima][more]
KAG6591500.12.0e-2376.62DNA cross-link repair 1A protein, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022976979.12.0e-2376.62DNA cross-link repair 1A protein isoform X1 [Cucurbita maxima][more]
KAG7024385.12.0e-2375.32DNA cross-link repair 1A protein [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lag0018942 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018942.1Lag0018942.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006303 double-strand break repair via nonhomologous end joining
biological_process GO:0036297 interstrand cross-link repair
biological_process GO:0031848 protection from non-homologous end joining at telomere
cellular_component GO:0005634 nucleus
molecular_function GO:0035312 5'-3' exodeoxyribonuclease activity
molecular_function GO:0003684 damaged DNA binding