Lag0018648 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018648
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr5: 31699452 .. 31700163 (+)
RNA-Seq Expression	Lag0018648
Synteny	Lag0018648

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCATCAATTTCACCATTTTCGTCTACATTTCCCTAATCTTTCTCTCTCTACCAGAATCGCTCTCTCTCTCCTCGAGCATCCACGACCTCCTCCGGTCGCAAGGGCTGCCGGCGGGGCTTCTTCCGAAGGAGGTCAAGTCCTACGCCCTCTCTCAGAATGGGCTGCTGGAAGTGTTCTTGGATGGGCCTTGTTTGACCAAATACGAGAACAGGGTTCTGTTCGAGAGCGTGGTTAGGGCTAATCTCAGCTATGGCAGTCTGATCGGCGTTCAGGGTCTCACTCAGGAGGAGCTCTTTCTCTGGCTTCCTGTTAAGGATATCATTGTTGATGACCCTAAATCCGGTCTTATTCTCTTTGACATTGGTGTCGCTCATAAGCAACTTGCTCTTTCTCTCTTCGAAGACCCCCCCAGTTGCAAGGCTCAGCCCAAAGGTATTCTCACCATTATCAATTTCTTCTAATTTTTTCGCTTAACTTTTTCTTCTTGATTTCTGTTGCTGTGTCTTGCGTTTTGTGCTCTGGATTTTTCATCGGTAGCTTGTGAATTTTTCGATTTTGTTGATTGTTGTGTGTTTTTGTGTTGAATATTCGATCTAGGGTTTCGATGATTTGAGATATGATTTTGATTTGTGTGTGTGGTTGGGATTTGCAGGGGCTTTGAGGAATCATGTGAGGAAGGAGAAGGGATTTGAAGCTCTCAGATAG

mRNA sequence

ATGGCCTTCATCAATTTCACCATTTTCGTCTACATTTCCCTAATCTTTCTCTCTCTACCAGAATCGCTCTCTCTCTCCTCGAGCATCCACGACCTCCTCCGGTCGCAAGGGCTGCCGGCGGGGCTTCTTCCGAAGGAGGTCAAGTCCTACGCCCTCTCTCAGAATGGGCTGCTGGAAGTGTTCTTGGATGGGCCTTGTTTGACCAAATACGAGAACAGGGTTCTGTTCGAGAGCGTGGTTAGGGCTAATCTCAGCTATGGCAGTCTGATCGGCGTTCAGGGTCTCACTCAGGAGGAGCTCTTTCTCTGGCTTCCTGTTAAGGATATCATTGTTGATGACCCTAAATCCGGTCTTATTCTCTTTGACATTGGTGTCGCTCATAAGCAACTTGCTCTTTCTCTCTTCGAAGACCCCCCCAGTTGCAAGGCTCAGCCCAAAGGGGCTTTGAGGAATCATGTGAGGAAGGAGAAGGGATTTGAAGCTCTCAGATAG

Coding sequence (CDS)

ATGGCCTTCATCAATTTCACCATTTTCGTCTACATTTCCCTAATCTTTCTCTCTCTACCAGAATCGCTCTCTCTCTCCTCGAGCATCCACGACCTCCTCCGGTCGCAAGGGCTGCCGGCGGGGCTTCTTCCGAAGGAGGTCAAGTCCTACGCCCTCTCTCAGAATGGGCTGCTGGAAGTGTTCTTGGATGGGCCTTGTTTGACCAAATACGAGAACAGGGTTCTGTTCGAGAGCGTGGTTAGGGCTAATCTCAGCTATGGCAGTCTGATCGGCGTTCAGGGTCTCACTCAGGAGGAGCTCTTTCTCTGGCTTCCTGTTAAGGATATCATTGTTGATGACCCTAAATCCGGTCTTATTCTCTTTGACATTGGTGTCGCTCATAAGCAACTTGCTCTTTCTCTCTTCGAAGACCCCCCCAGTTGCAAGGCTCAGCCCAAAGGGGCTTTGAGGAATCATGTGAGGAAGGAGAAGGGATTTGAAGCTCTCAGATAG

Protein sequence

MAFINFTIFVYISLIFLSLPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLEVFLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLILFDIGVAHKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR

Homology

[Close]

BLAST of Lag0018648 vs. NCBI nr
Match: XP_022992944.1 (uncharacterized protein LOC111489122 [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 6.6e-76
Identity = 152/163 (93.25%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 3   FINFTIFVYISLIFLS--LPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLEV 62
           F NFT+F YISL+FLS  LP SLSLSS+IHDLLRSQGLPAGLLPKEVKSY LSQNGLLEV
Sbjct: 7   FHNFTLFFYISLLFLSLRLPHSLSLSSTIHDLLRSQGLPAGLLPKEVKSYTLSQNGLLEV 66

Query: 63  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 122
           FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL
Sbjct: 67  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 126

Query: 123 FDIGVAHKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR 164
           FDIGVAHKQLALSLFEDPPSCKAQPK ALRN VRKEKGFEALR
Sbjct: 127 FDIGVAHKQLALSLFEDPPSCKAQPKEALRNQVRKEKGFEALR 169

[Close]

BLAST of Lag0018648 vs. NCBI nr
Match: KAG6600749.1 (hypothetical protein SDJN03_05982, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031389.1 hypothetical protein SDJN02_05429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 9.5e-75
Identity = 151/163 (92.64%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   FINFTIFVYISLIFLS--LPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLEV 62
           F NFT F YISL+ LS  LP SLSLSS+IHDLLRSQGLPAGLLPKEVKSY LSQNGLLEV
Sbjct: 7   FHNFTFFFYISLLSLSLRLPHSLSLSSTIHDLLRSQGLPAGLLPKEVKSYTLSQNGLLEV 66

Query: 63  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 122
           FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL
Sbjct: 67  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 126

Query: 123 FDIGVAHKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR 164
           FDIGVAHKQLALSLFEDPPSCKAQPK ALRN VRKEKGFEALR
Sbjct: 127 FDIGVAHKQLALSLFEDPPSCKAQPKEALRNQVRKEKGFEALR 169

[Close]

BLAST of Lag0018648 vs. NCBI nr
Match: XP_022942558.1 (uncharacterized protein LOC111447556 [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 3.6e-74
Identity = 150/163 (92.02%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 3   FINFTIFVYISLIF--LSLPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLEV 62
           F NFT F YISL+   L LP SLSLSS+IHDLLRSQGLPAGLLPKEVKSY LSQNGLLEV
Sbjct: 7   FHNFTFFFYISLLSLPLRLPHSLSLSSTIHDLLRSQGLPAGLLPKEVKSYTLSQNGLLEV 66

Query: 63  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 122
           FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL
Sbjct: 67  FLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLIL 126

Query: 123 FDIGVAHKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR 164
           FDIGVAHKQLALSLFEDPPSCKAQPK ALRN VRKEKGFEALR
Sbjct: 127 FDIGVAHKQLALSLFEDPPSCKAQPKEALRNQVRKEKGFEALR 169

[Close]

BLAST of Lag0018648 vs. NCBI nr
Match: XP_038905336.1 (uncharacterized protein LOC120091403 [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 6.1e-74
Identity = 147/164 (89.63%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 2   AFINFTIF--VYISLIFLSLPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLE 61
           AF +FTIF  + +SLI LSLP SLSLSS+IHDLLRS+GLP GLLPKEVKSY+LS NGLLE
Sbjct: 3   AFFHFTIFFTISLSLISLSLPSSLSLSSTIHDLLRSKGLPPGLLPKEVKSYSLSPNGLLE 62

Query: 62  VFLDGPCLTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLI 121
           VFLDGPCLTKYENRVLF+SVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLI
Sbjct: 63  VFLDGPCLTKYENRVLFQSVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLI 122

Query: 122 LFDIGVAHKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR 164
           LFDIGVAHKQLALSLFEDPPSCK+QPKG LRNHVRKEKGFEALR
Sbjct: 123 LFDIGVAHKQLALSLFEDPPSCKSQPKGGLRNHVRKEKGFEALR 166

[Close]

BLAST of Lag0018648 vs. NCBI nr
Match: XP_023546381.1 (uncharacterized protein LOC111805505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 147/157 (93.63%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 9   FVYISLIFLS--LPESLSLSSSIHDLLRSQGLPAGLLPKEVKSYALSQNGLLEVFLDGPC 68
           F YISL+ LS  LP SLSLSS+IHDLLRSQGLPAGLLPKEVKSY LSQNGLLEVFLDGPC
Sbjct: 6   FFYISLLSLSLCLPHSLSLSSTIHDLLRSQGLPAGLLPKEVKSYTLSQNGLLEVFLDGPC 65

Query: 69  LTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLILFDIGVA 128
           LTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLILFDIGVA
Sbjct: 66  LTKYENRVLFESVVRANLSYGSLIGVQGLTQEELFLWLPVKDIIVDDPKSGLILFDIGVA 125

Query: 129 HKQLALSLFEDPPSCKAQPKGALRNHVRKEKGFEALR 164
           HKQLALSLFEDPPSCKAQPK ALRN VRKEKGFEALR
Sbjct: 126 HKQLALSLFEDPPSCKAQPKEALRNQVRKEKGFEALR 162

The following BLAST results are available for this feature:

BLAST of Lag0018648 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992944.1	6.6e-76	93.25	uncharacterized protein LOC111489122 [Cucurbita maxima]	[more]
KAG6600749.1	9.5e-75	92.64	hypothetical protein SDJN03_05982, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022942558.1	3.6e-74	92.02	uncharacterized protein LOC111447556 [Cucurbita moschata]	[more]
XP_038905336.1	6.1e-74	89.63	uncharacterized protein LOC120091403 [Benincasa hispida]	[more]
XP_023546381.1	6.8e-73	93.63	uncharacterized protein LOC111805505 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0018648 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..163
None	No IPR available	PANTHER	PTHR31676:SF118	SUBFAMILY NOT NAMED	coord: 8..162
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 21..143 e-value: 5.5E-25 score: 89.7
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 8..143
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 30..136 e-value: 6.6E-26 score: 91.0
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 8..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018648.1	Lag0018648.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane