Lag0018609 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018609
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 30679911 .. 30681710 (+)
RNA-Seq Expression	Lag0018609
Synteny	Lag0018609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCACTTCAGCATCATGTCAAGTTGTATGGTTGAGAAGGATTTTAGGTGACATGAAGCAACATCAAAAGGAGGCTACCACAATTTTCTGTGACAATCAGTCCACCATTGCGATGGCCAAAGACCCAGTTCATCATAACTGTACAAGGCATATTGATACTCGACATCATTTCATACGGGAGTTGTTAGTTGATGGTAGCATAAGGATGAAACACTGCAGTTCTCAAGAACAAATTGTTGATGTGTTTACAAACTCACTCTCTTTAGAAAAGTTTGCTTATTTGAGAGAGAAGTTAGGTGTTTGCATTAAGGGGGCGAATATTACAAATTAATGCAAATCGTTTTTTTGTTATGTTTTACAAAGTCCATAGTTAGTTTGGTAGGGTCCTAGTCTTTTGGTAATTGTTAGCATGCTTTATGTTAGGAGAAAAAATCTCAATTGGGTACCTATTTTTAGATAATTTGTTATTTGTTTTGTGTATTTATGAAGCCCTCATATCAATAATTTTTTGCATCAGATTTCATTCCATCTTTACTGAGTGTATCTACGGCCAAGTTTTGTGTTTTGTTTCTAAACACTTTTATCTTTGACAATCCAGAGGTTCCTTTGGAGACGTTGGAAAAATATAGATAAGATTACTTTGGCTCCTGCATAAGAATCACACCCACAGTATGTTATCCAGAGCGAAGATAGTTTAATTAGATCACATTGAAGGCTTAAAATTATACAAATGACCTATCTAGAAAAAAAGAAAACTCTGTTTGACTAAGTATCATATCAGACATGTGTCGTACATAGCTACATCCACACACGCTTCGATTGAGGATTGAAAAAGAAAAATCATTGGTTAAAAATCACTTTTGGACATATCAATGACATCATATGGAACACATCTAGAATCACAAACAAGTCTACCTAAAAAATTATTTTTAGGTAGAAGCACCGGCGAACGGTGGCAGAAGCACCGACGACGATAACCATTAAAGGAGTAAAGAGAAAGGAGAGTGAAGAGGAGAAAGGGGGCAGAGGGAGGAGAAGGAGATGGAAGAGAGAGAAGTTTTTTTTAATAATAATAATTTTATTATTATTATATTATTATTATATTATTATTTTAATTAAAAATTAATATTTTATTATTTTAAACTGCCACGTCAGCCCTAAAGGGACTCAATAGAAACATTTTCGAAACAGTGGGGACTTGATTGACCGATTTTGAAACGTAGGAACCTATTAGAATCTAACTCGAAACATGAGGGACCAAAAAGGTATTTTACCATTTTCTCTTTCTTTTTTCTTCTTTTATCTTTTTCCTTAATCTTCTTCCCCACAACTCTCAAACCCTAATCTAACCCCCACTGCCTCCAGCCGCCGTCGCTGCCGATATTCCTTTTTTTTCTTTTCTTCTTTTTCTCTCTCCTCTCCTCCCTTTTTCTTCTTCCACTTCTTCCCTTCTCCTCCATTCTCTTTCTTTCTTGTTGATTTAAAAAAGATCAAAACCCAAATCACAGCCCTTCGCTCACAGCCACAAATCTGGCAGGAAGAAAAAGGTTCGTCGATTCCGTCTATGCTTCGCAGTTCTGCTCCCGCCGGATCTGTCAATTCCGTTTGTCGATTTCGTCAGGCTAAGATACCGAATCTGTGCTTCTCAGATCTGCTCGCGCCGGATCTGTGCTTCGCAGTTGTGCTCGATTTCGTCGTCGAAGAAGGAGCAAAGATTTCTCTCTCTCTCTCGGTCGGTCATGTTGTTTCTCTCTCTCCTCTGTGTTCGGTGTTGGAAAGGGAGGAGGGACATTAG

mRNA sequence

ATGGATGTCACTTCAGCATCATGTCAAGTTGTATGGTTGAGAAGGATTTTAGGTGACATGAAGCAACATCAAAAGGAGGCTACCACAATTTTCTGTGACAATCAGTCCACCATTGCGATGGCCAAAGACCCAGTTCATCATAACTGTACAAGGCATATTGATACTCGACATCATTTCATACGGGAGTTGTTAGTTGATGCCCTTCGCTCACAGCCACAAATCTGGCAGGAAGAAAAAGGTTCGTCGATTCCGTCTATGCTTCGCAGTTCTGCTCCCGCCGGATCTGTCAATTCCGTTTGTCGATTTCGTCAGGCTAAGATACCGAATCTGTGCTTCTCAGATCTGCTCGCGCCGGATCTGTGCTTCGCAGTTGTGCTCGATTTCGTCGTCGAAGAAGGAGCAAAGATTTCTCTCTCTCTCTCGGTCGGTCATGTTGTTTCTCTCTCTCCTCTGTGTTCGGTGTTGGAAAGGGAGGAGGGACATTAG

Coding sequence (CDS)

ATGGATGTCACTTCAGCATCATGTCAAGTTGTATGGTTGAGAAGGATTTTAGGTGACATGAAGCAACATCAAAAGGAGGCTACCACAATTTTCTGTGACAATCAGTCCACCATTGCGATGGCCAAAGACCCAGTTCATCATAACTGTACAAGGCATATTGATACTCGACATCATTTCATACGGGAGTTGTTAGTTGATGCCCTTCGCTCACAGCCACAAATCTGGCAGGAAGAAAAAGGTTCGTCGATTCCGTCTATGCTTCGCAGTTCTGCTCCCGCCGGATCTGTCAATTCCGTTTGTCGATTTCGTCAGGCTAAGATACCGAATCTGTGCTTCTCAGATCTGCTCGCGCCGGATCTGTGCTTCGCAGTTGTGCTCGATTTCGTCGTCGAAGAAGGAGCAAAGATTTCTCTCTCTCTCTCGGTCGGTCATGTTGTTTCTCTCTCTCCTCTGTGTTCGGTGTTGGAAAGGGAGGAGGGACATTAG

Protein sequence

MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVDALRSQPQIWQEEKGSSIPSMLRSSAPAGSVNSVCRFRQAKIPNLCFSDLLAPDLCFAVVLDFVVEEGAKISLSLSVGHVVSLSPLCSVLEREEGH

Homology

[Close]

BLAST of Lag0018609 vs. NCBI nr
Match: KAG8502460.1 (hypothetical protein CXB51_000380 [Gossypium anomalum])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1   MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFI 60
           M VT+A+ Q VW+RRIL D+KQ Q EATTI+CDNQSTIAM K+ V+H+ TRHI+TRHHFI
Sbjct: 287 MAVTAAAYQAVWIRRILDDLKQTQVEATTIYCDNQSTIAMTKNLVYHSRTRHIETRHHFI 346

Query: 61  RELL 65
           REL+
Sbjct: 347 RELV 350

[Close]

BLAST of Lag0018609 vs. NCBI nr
Match: TXG64214.1 (hypothetical protein EZV62_011208 [Acer yangbiense])

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-16
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFI 60
           M   SA+CQ VWLRRIL DMKQHQK  T + CDNQSTIAM +  V H+ TRHI+TRHHFI
Sbjct: 198 MAANSAACQAVWLRRILKDMKQHQKVPTIVQCDNQSTIAMTRKSVFHSHTRHIETRHHFI 257

Query: 61  RELL 65
           REL+
Sbjct: 258 RELV 261

[Close]

BLAST of Lag0018609 vs. NCBI nr
Match: KAF2318763.1 (hypothetical protein GH714_010529 [Hevea brasiliensis])

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-16
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1   MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFI 60
           M VTSA+CQ +WLR+I+ DMK  Q EAT I+CDNQSTIAM K+ VHH+ TRHI+T HHF+
Sbjct: 189 MVVTSAACQAIWLRQIMEDMKLTQVEATNIYCDNQSTIAMTKNLVHHSRTRHIETWHHFV 248

Query: 61  RELL 65
           REL+
Sbjct: 249 RELV 252

[Close]

BLAST of Lag0018609 vs. NCBI nr
Match: KAG6520057.1 (hypothetical protein ZIOFF_017087 [Zingiber officinale])

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-15
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 4   TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIREL 63
           T A+C+ VWLRRIL D++Q Q+  TTIFCDN STIAM K+PV H  T+HI+ RHHFIR+L
Sbjct: 467 TDAACEAVWLRRILSDVEQKQEAPTTIFCDNNSTIAMTKNPVFHARTKHIELRHHFIRDL 526

Query: 64  LVD 67
           + D
Sbjct: 527 VSD 529

[Close]

BLAST of Lag0018609 vs. NCBI nr
Match: KAG6487976.1 (hypothetical protein ZIOFF_056734 [Zingiber officinale])

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-15
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 3   VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRE 62
           VT A+C+ VWLRRIL D++Q Q+  TTIFCDN STIAM K+PV H  T+HI+ RHHFIR+
Sbjct: 200 VTDAACEAVWLRRILSDVEQKQEAPTTIFCDNNSTIAMTKNPVFHARTKHIELRHHFIRD 259

Query: 63  LLVD 67
            + D
Sbjct: 260 FVSD 263

[Close]

BLAST of Lag0018609 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 4    TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIREL 63
            T    +++WL+R L ++  HQKE   ++CD+QS I ++K+ ++H  T+HID R+H+IRE+
Sbjct: 1228 TETGKEMIWLKRFLQELGLHQKE-YVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREM 1287

Query: 64   LVD 67
            + D
Sbjct: 1288 VDD 1289

The following BLAST results are available for this feature:

BLAST of Lag0018609 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8502460.1	1.5e-16	70.31	hypothetical protein CXB51_000380 [Gossypium anomalum]	[more]
TXG64214.1	5.8e-16	68.75	hypothetical protein EZV62_011208 [Acer yangbiense]	[more]
KAF2318763.1	5.8e-16	67.19	hypothetical protein GH714_010529 [Hevea brasiliensis]	[more]
KAG6520057.1	8.3e-15	63.49	hypothetical protein ZIOFF_017087 [Zingiber officinale]	[more]
KAG6487976.1	8.3e-15	62.50	hypothetical protein ZIOFF_056734 [Zingiber officinale]	[more]

BLAST of Lag0018609 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.2e-09	41.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..63
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 4..63
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 3..64 e-value: 3.27039E-28 score: 99.8501

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018609.1	Lag0018609.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0052924	all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity
molecular_function	GO:0003677	DNA binding