Lag0018575 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018575
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr5: 29879376 .. 29880031 (-)
RNA-Seq ExpressionLag0018575
SyntenyLag0018575
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCAAAGAACAACGCATGCCTCACATCAACCTTCTAACTGTTATACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGGGCATCCCTAGTAGCCATCACAACCGGACTGGAGAACGAGAGGTTACTGAATTCAATAGGTAAAAGCCAACCTGGCACTTAAGCAGAGTTTGTTTCTCAGGCACAGAAATACATGAGCGCAGATGAGTTGCCTAGATCGAAGAGGTCAGAGCACAAGGGGTATTCTTCAGTCGACCGAGACTAGAAGAAGGACAAAAGAGTGCGGACAGACGAAGGAGGCCGAGCGACCCTAGCCGAGGCCGACCAGACCGAGGAGACTACTTAAGGAAGTTTGAAAAGTACACTATTACCTCAATCCCACAGGAGCAAATTTTGATGGAAATCTGGAATACGAACCTGCTTAACGTGCCTAGAAAATTGAAGTCAAATCCTGACAAAGGAGAGAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGATCTGCATTCAGCTGAAGGACAAAATTAAAGCACTGGTTCAAAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGTCGACCACAGATAG

mRNA sequence

ATGGGAGCCAAAGAACAACGCATGCCTCACATCAACCTTCTAACTGTTATACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGGGCATCCCTAGTAGCCATCACAACCGGACTGGAGAACGAGAGTCGACCGAGACTAGAAGAAGGACAAAAGAGTGCGGACAGACGAAGGAGGCCGAGCGACCCTAGCCGAGGCCGACCAGACCGAGGAGACTACTTAAGGAAGTTTGAAAAGTACACTATTACCTCAATCCCACAGGAGCAAATTTTGATGGAAATCTGGAATACGAACCTGCTTAACGTGCCTAGAAAATTGAAGTCAAATCCTGACAAAGGAGAGAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGATCTGCATTCAGCTGAAGGACAAAATTAAAGCACTGGTTCAAAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGTCGACCACAGATAG

Coding sequence (CDS)

ATGGGAGCCAAAGAACAACGCATGCCTCACATCAACCTTCTAACTGTTATACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGGGCATCCCTAGTAGCCATCACAACCGGACTGGAGAACGAGAGTCGACCGAGACTAGAAGAAGGACAAAAGAGTGCGGACAGACGAAGGAGGCCGAGCGACCCTAGCCGAGGCCGACCAGACCGAGGAGACTACTTAAGGAAGTTTGAAAAGTACACTATTACCTCAATCCCACAGGAGCAAATTTTGATGGAAATCTGGAATACGAACCTGCTTAACGTGCCTAGAAAATTGAAGTCAAATCCTGACAAAGGAGAGAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGATCTGCATTCAGCTGAAGGACAAAATTAAAGCACTGGTTCAAAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGTCGACCACAGATAG

Protein sequence

MGAKEQRMPHINLLTVIQQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGLENESRPRLEEGQKSADRRRRPSDPSRGRPDRGDYLRKFEKYTITSIPQEQILMEIWNTNLLNVPRKLKSNPDKGEKSQYCLFHRDHGHSTRICIQLKDKIKALVQNGYLKEFTTKAEVDHR
Homology
BLAST of Lag0018575 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 75/204 (36.76%), Postives = 114/204 (55.88%), Query Frame = 0

Query: 1   MGAKEQRMPHINLLTVIQQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGLENES-- 60
           +G + +  P   LLT+ Q++ ESLRDY+ RFN+E LQVEG ++  SL+A  +G+ +E   
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326

Query: 61  -----------------------------RPRLEEGQKSADRRRRPSDPSRG-------R 120
                                          R  +G+++  +R R  D  +G       R
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQGSRWEKRDR 386

Query: 121 PDRGDYLRKFEKYTITSIPQEQILMEIWNTNLLNVPRKLKSNPDKGEKSQYCLFHRDHGH 167
             + D  RKFEKYT T++P EQ+LMEI +  LL  P ++K++  K  K +YCLFHRDHGH
Sbjct: 387 SSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGH 446

BLAST of Lag0018575 vs. NCBI nr
Match: XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])

HSP 1 Score: 121.3 bits (303), Expect = 8.2e-24
Identity = 69/210 (32.86%), Postives = 109/210 (51.90%), Query Frame = 0

Query: 1   MGAKEQRMPHINLLTVIQQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGLE----- 60
           +GA++Q+ P    L V Q   ESL+D ITRFNKE ++VE YS+  +L  I  GL+     
Sbjct: 73  VGARDQQFPPTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALTTIMVGLQPGKFH 132

Query: 61  ----------------------------------NESRPRLEEGQKSADRRRRPSDPSRG 120
                                             N   PR+ E +K  + + +  + +  
Sbjct: 133 YSLAKNPARTFTELLSRAQKYSNVDELTNAKRGANSDSPRVAEKRKIKEEQIKNKEKTSR 192

Query: 121 RPDRGDYL--RKFEKYTITSIPQEQILMEIWNTNLLNVPRKLKSNPDKGEKSQYCLFHRD 170
              +G  +   +F +YT  ++P+EQ+LM+I N +LL  P+ +K  P++ ++S+YC +HRD
Sbjct: 193 LEKKGPKILQSRFPRYTPLNLPEEQVLMQIRNLDLLRKPKDIKIAPNRRDRSKYCRYHRD 252

BLAST of Lag0018575 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 70/204 (34.31%), Postives = 108/204 (52.94%), Query Frame = 0

Query: 1   MGAKEQRMPHINLLTVIQQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGLENES-- 60
           +G + +  P   LLT+ Q++ ESL DY+ RFNKE LQ+E  ++  SL+A  +G+ +E   
Sbjct: 51  VGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLS 110

Query: 61  -----------------------------RPRLEEGQKSADRRRRPSDPSRG-------R 120
                                          R  +G+++  +R R  D  +G       R
Sbjct: 111 FSFGKKTPSTFSETLSRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDKPQGSRWEKRDR 170

Query: 121 PDRGDYLRKFEKYTITSIPQEQILMEIWNTNLLNVPRKLKSNPDKGEKSQYCLFHRDHGH 167
             + D  RKFEKYT T++P EQ+LMEI +  LL  P ++K    K  K +YCLFHRDH H
Sbjct: 171 SSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNH 230

BLAST of Lag0018575 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-23
Identity = 68/187 (36.36%), Postives = 100/187 (53.48%), Query Frame = 0

Query: 18  QQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGLENES------------------- 77
           +++ ESL DY+TRFNKE LQVEG ++  SL+A   G+ +E                    
Sbjct: 109 KRTTESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSR 168

Query: 78  ------------RPRLEEGQKSADRRRRPSDPSRG-------RPDRGDYLRKFEKYTITS 137
                         R   G+++  +R R  D  +G       R  + D  +KFEKYT T+
Sbjct: 169 AQRYMSAGEFFYSKRESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTT 228

Query: 138 IPQEQILMEIWNTNLLNVPRKLKSNPDKGEKSQYCLFHRDHGHSTRICIQLKDKIKALVQ 167
           +P EQ+LMEI N  LL  P ++ ++  K  K +YCLFH DHGH+T+ C  LK++++ L+ 
Sbjct: 229 VPLEQVLMEIKNQRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLIL 288

BLAST of Lag0018575 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 114.8 bits (286), Expect = 7.7e-22
Identity = 70/221 (31.67%), Postives = 104/221 (47.06%), Query Frame = 0

Query: 3   AKEQRMPHINLLTVIQQSGESLRDYITRFNKEALQVEGYSEGASLVAITTGL-------- 62
           A+++  P   LLTV QQ GE+LRDYI R+N E  QV+GY +G +L  I  GL        
Sbjct: 266 ARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWS 325

Query: 63  ----------------------------ENESRPRLEEGQKSADRRR------------- 122
                                        N+ +    +G+K  D +R             
Sbjct: 326 VSKRPPTSYSEMLARAEKYANAEERFKNRNQEKGESTKGKKKKDDQRERRVVRPDQSLRR 385

Query: 123 ---RPSDPSRGRPDRGDYLRKFEKYTITSIPQEQILMEIWNTNLLNVPRKLKSNPDKGEK 172
              RP + S  R  R     +F  +T  + P+EQILM++ N  L   P  +K+NP +   
Sbjct: 386 NQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPMKTNPSRRNP 445

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.11.6e-2736.76uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_024042801.18.2e-2432.86uncharacterized protein LOC112099618 [Citrus clementina][more]
XP_022159368.11.8e-2334.31uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022142767.13.1e-2336.36uncharacterized protein LOC111012805 [Momordica charantia][more]
XP_024041095.17.7e-2231.67uncharacterized protein LOC112098853 [Citrus clementina][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018575.1Lag0018575.1mRNA