Lag0017683 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017683
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Periodic tryptophan protein 2-like protein
Location	chr5: 6767992 .. 6769050 (+)
RNA-Seq Expression	Lag0017683
Synteny	Lag0017683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCAACATGGGGGGAAGAACGACACTTCCCCCTCAACATACCGAAATTTTGGTATGTCGACCGAATTTAATACCTTGCTTACATTAGACTGTATTTAAAAGAAAGGAAAAAGAAAAGAAAAGCTAGAAAAAAGAAACCCTAAAATCCCTATCTCTCCCTCTCTCTTTCATGATTAAGCCAAGACCCTCCACCCTCGATTTCTTCTTCTCGCCAACAAAAGACCCACGCAGCTCGTCCCTCCAACTCTCCTTCGTTCTTCCCTCGTCGGCAACCCCCTCTCTTTCTCCCTCTCGTGTTGTCGCCGCCAGTAGCAGACCCGCACGCCGTCTCCTACTCGCGTCACCGCTCCTCCTCTCGACTGCAGTTCTCTTTTTCCCCCCTCGATGTAAGCTTTTCTCTCTCTCATCTTTCGTGTTTTGGCAAGCAAGGACGTCAACTCTCTTCTTCTCTCATGTTTCGGCCAAGATCTGCAAGGAGAAGCTCGATTTCTTCCTCCCATCGTCGGGTTTCTCTCTCTCCCGATGTCTTCCCATTTTTAAACGGTAACCGCACCAATTCGCGAGTTCTAGCACAATTTCCCCTTCTCTTTAGCAAATTCGGTGAGTTTTGGTATTTGCCCATGTCTTTGCCGGCGATGAATTACTAGTTTTCAAACCTGTTAGGAGCGCCTTACAAGGGAGGGAATATTCTAATTTCAGAGAACACCCTGTTAATCTCACCCGTCGACAACCGAATCTCAGTTACCAACCTTGTGAAGTCTCAAAGCTCGACTCTTCCCGTTCAGTCATCGTCCAATATTTCCCGAATTGTCGTCTCTTTAGATGGGGCATTCTTGTTCACTGTTGACGAGAAGAATCGTTGCTTCTTCATCAATCTCCTACGACGAGTGGTGGCTCACCGTATTTCGTTCAAGAAGCTCGTCAGTGTCGTCAAATTCAGCCCCAATGGTGCATTTATTGCTCTTGCCATTGGGAAGTTGGTCCAAATTTGGCGGTCACTGGGGTTCAAGAAAGAGTTCTTTCCCTTTGAACAAACTGGCAAGGACTTTTGCTGA

mRNA sequence

ATGTCGCCAACATGGGGGGAAGAACGACACTTCCCCCTCAACATACCGAAATTTTGCCAAGACCCTCCACCCTCGATTTCTTCTTCTCGCCAACAAAAGACCCACGCAGCTCGTCCCTCCAACTCTCCTTCGTTCTTCCCTCGTCGGCAACCCCCTCTCTTTCTCCCTCTCGTGTTGTCGCCGCCAGTAGCAGACCCGCACGCCGTCTCCTACTCGCGTCACCGCTCCTCCTCTCGACTGCAGTTCTCTTTTTCCCCCCTCGATGTAAGCTTTTCTCTCTCTCATCTTTCGTGTTTTGGCAAGCAAGGACGTCAACTCTCTTCTTCTCTCATGTTTCGGCCAAGATCTGCAAGGAGAAGCTCGATTTCTTCCTCCCATCGTCGGGTTTCTCTCTCTCCCGATGTCTTCCCATTTTTAAACGGTAACCGCACCAATTCGCGAGTTCTAGCACAATTTCCCCTTCTCTTTAGCAAATTCGAGAACACCCTGTTAATCTCACCCGTCGACAACCGAATCTCAGTTACCAACCTTGTGAAGTCTCAAAGCTCGACTCTTCCCGTTCAGTCATCGTCCAATATTTCCCGAATTGTCGTCTCTTTAGATGGGGCATTCTTGTTCACTGTTGACGAGAAGAATCGTTGCTTCTTCATCAATCTCCTACGACGAGTGGTGGCTCACCGTATTTCGTTCAAGAAGCTCGTCAGTGTCGTCAAATTCAGCCCCAATGGTGCATTTATTGCTCTTGCCATTGGGAAGTTGGTCCAAATTTGGCGGTCACTGGGGTTCAAGAAAGAGTTCTTTCCCTTTGAACAAACTGGCAAGGACTTTTGCTGA

Coding sequence (CDS)

ATGTCGCCAACATGGGGGGAAGAACGACACTTCCCCCTCAACATACCGAAATTTTGCCAAGACCCTCCACCCTCGATTTCTTCTTCTCGCCAACAAAAGACCCACGCAGCTCGTCCCTCCAACTCTCCTTCGTTCTTCCCTCGTCGGCAACCCCCTCTCTTTCTCCCTCTCGTGTTGTCGCCGCCAGTAGCAGACCCGCACGCCGTCTCCTACTCGCGTCACCGCTCCTCCTCTCGACTGCAGTTCTCTTTTTCCCCCCTCGATGTAAGCTTTTCTCTCTCTCATCTTTCGTGTTTTGGCAAGCAAGGACGTCAACTCTCTTCTTCTCTCATGTTTCGGCCAAGATCTGCAAGGAGAAGCTCGATTTCTTCCTCCCATCGTCGGGTTTCTCTCTCTCCCGATGTCTTCCCATTTTTAAACGGTAACCGCACCAATTCGCGAGTTCTAGCACAATTTCCCCTTCTCTTTAGCAAATTCGAGAACACCCTGTTAATCTCACCCGTCGACAACCGAATCTCAGTTACCAACCTTGTGAAGTCTCAAAGCTCGACTCTTCCCGTTCAGTCATCGTCCAATATTTCCCGAATTGTCGTCTCTTTAGATGGGGCATTCTTGTTCACTGTTGACGAGAAGAATCGTTGCTTCTTCATCAATCTCCTACGACGAGTGGTGGCTCACCGTATTTCGTTCAAGAAGCTCGTCAGTGTCGTCAAATTCAGCCCCAATGGTGCATTTATTGCTCTTGCCATTGGGAAGTTGGTCCAAATTTGGCGGTCACTGGGGTTCAAGAAAGAGTTCTTTCCCTTTGAACAAACTGGCAAGGACTTTTGCTGA

Protein sequence

MSPTWGEERHFPLNIPKFCQDPPPSISSSRQQKTHAARPSNSPSFFPRRQPPLFLPLVLSPPVADPHAVSYSRHRSSSRLQFSFSPLDVSFSLSHLSCFGKQGRQLSSSLMFRPRSARRSSISSSHRRVSLSPDVFPFLNGNRTNSRVLAQFPLLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFEQTGKDFC

Homology

[Close]

BLAST of Lag0017683 vs. NCBI nr
Match: XP_022998917.1 (periodic tryptophan protein 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-40
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKLVSVVKFSSDGAFIAVGIGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. NCBI nr
Match: XP_022998916.1 (periodic tryptophan protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-40
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKLVSVVKFSSDGAFIAVGIGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. NCBI nr
Match: XP_022948549.1 (periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 5.8e-40
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKPVSVVKFSPDGAFIAVGTGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. NCBI nr
Match: XP_023524820.1 (periodic tryptophan protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 5.8e-40
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKPVSVVKFSPDGAFIAVGTGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. NCBI nr
Match: KAG6606783.1 (Periodic tryptophan protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 5.8e-40
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKPVSVVKFSPDGAFIAVGTGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot
Match: Q8VYZ5 (Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-32
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL
Sbjct: 22  KNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFEQ 272
            RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS GF++   PFE+
Sbjct: 82  PRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFER 133

[Close]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot
Match: Q9C1X1 (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 164 LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRV 223
           ++SPV NR+SV NL  + S T P ++  NIS I +S     L +VDE+ RC   N LRR 
Sbjct: 29  ILSPVGNRVSVYNLKDNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRS 88

Query: 224 VAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGF--KKEFFPF 270
           V H  +FK  V  ++FSPNG F A+++GKL+Q+WR+     ++EF PF
Sbjct: 89  VLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQVWRTPNSLEEREFAPF 136

[Close]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot
Match: P25635 (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PWP2 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 164 LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRV 223
           L+SPV NR+SV +L+ ++S T   +   NI+ I ++  G  L ++DE  R   +N   R 
Sbjct: 29  LLSPVGNRVSVFDLINNKSFTFEYEHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARN 88

Query: 224 VAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKK--EFFPF 270
           V H  +FK+  S VKFSP+G   ALA G+ +QIW++    K  +F PF
Sbjct: 89  VLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWKTPDVNKDRQFAPF 136

[Close]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot
Match: Q9C270 (Periodic tryptophan protein 2 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=B18D24.40 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-14
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 148 VLAQFPLLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFT 207
           V  Q  LLFS  + T L SPV NR++V NLV ++S TLP     NI+RI ++  G  L +
Sbjct: 14  VYCQGNLLFSP-DGTHLFSPVGNRVTVFNLVDNKSYTLPFSHRKNIARIGLTPQGNLLLS 73

Query: 208 VDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIW 258
           +DE  +    N+ RRVV +  SFK  V+ + FSP+G    + +G+ +++W
Sbjct: 74  IDEDGQAILTNVPRRVVLYHFSFKAPVTALSFSPSGRHFIVGLGRKIEVW 122

[Close]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot
Match: Q54PE0 (Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum OX=44689 GN=pwp2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-13
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 154 LLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNR 213
           +LF+   NT +ISPV NR++V +LV   S TLP+QS  NI R+ +S +G  L T DE   
Sbjct: 20  ILFTPDGNT-VISPVGNRLTVFDLVNHTSITLPIQSKYNIRRLALSPNGQILITSDESGH 79

Query: 214 CFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKE 266
              INL R+VV     F K    + FSPNGA IA+A+ + V ++++   +K+
Sbjct: 80  TLIINLTRQVVLGEYKFFKTPKSILFSPNGAIIAIAVLEKVFLFKTPIIQKQ 130

[Close]

BLAST of Lag0017683 vs. ExPASy TrEMBL
Match: A0A6J1K9C2 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-41
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKLVSVVKFSSDGAFIAVGIGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. ExPASy TrEMBL
Match: A0A6J1KBJ3 (periodic tryptophan protein 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-41
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKLVSVVKFSSDGAFIAVGIGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKPVSVVKFSPDGAFIAVGTGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. ExPASy TrEMBL
Match: A0A6J1G9L5 (periodic tryptophan protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTATLPVQSSSNICRIAVSPDGAFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS GFKKEFFPFE
Sbjct: 82  RRRVVLHRMFFKKPVSVVKFSPDGAFIAVGTGKLVQIWRSPGFKKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. ExPASy TrEMBL
Match: A0A1S3BZ00 (periodic tryptophan protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103494721 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           E+TLLISPV NRISVT+LVKSQ++TLP+QSSSNI RI +S DG FLFTVDEKNRC FINL
Sbjct: 22  EDTLLISPVGNRISVTDLVKSQTTTLPLQSSSNICRIALSPDGVFLFTVDEKNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFE 271
            RRVV HRISFKK VSVVKFSP+GA IA+  GKLVQIWR+ GF+KEFFPFE
Sbjct: 82  RRRVVLHRISFKKPVSVVKFSPDGANIAVGTGKLVQIWRAPGFRKEFFPFE 132

[Close]

BLAST of Lag0017683 vs. TAIR 10
Match: AT1G15440.1 (periodic tryptophan protein 2 )

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-33
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL
Sbjct: 22  KNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFEQ 272
            RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS GF++   PFE+
Sbjct: 82  PRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFER 133

[Close]

BLAST of Lag0017683 vs. TAIR 10
Match: AT1G15440.2 (periodic tryptophan protein 2 )

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-33
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 160 ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINL 219
           +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL
Sbjct: 22  KNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINL 81

Query: 220 LRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFEQ 272
            RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS GF++   PFE+
Sbjct: 82  PRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFER 133

The following BLAST results are available for this feature:

BLAST of Lag0017683 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998917.1	2.0e-40	83.78	periodic tryptophan protein 2 isoform X2 [Cucurbita maxima]	[more]
XP_022998916.1	2.0e-40	83.78	periodic tryptophan protein 2 isoform X1 [Cucurbita maxima]	[more]
XP_022948549.1	5.8e-40	82.88	periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 pe...	[more]
XP_023524820.1	5.8e-40	82.88	periodic tryptophan protein 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6606783.1	5.8e-40	82.88	Periodic tryptophan protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0017683 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYZ5	3.5e-32	62.50	Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1	[more]
Q9C1X1	2.6e-19	45.37	Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe (strain 972 /...	[more]
P25635	1.5e-14	39.81	Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
Q9C270	5.7e-14	40.00	Periodic tryptophan protein 2 homolog OS=Neurospora crassa (strain ATCC 24698 / ...	[more]
Q54PE0	2.8e-13	41.96	Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum OX=44689 GN=pw...	[more]

BLAST of Lag0017683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9C2	9.6e-41	83.78	periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KBJ3	9.6e-41	83.78	periodic tryptophan protein 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GA82	2.8e-40	82.88	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G9L5	2.8e-40	82.88	periodic tryptophan protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BZ00	2.0e-38	79.28	periodic tryptophan protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103494721 PE...	[more]

BLAST of Lag0017683 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15440.1	2.5e-33	62.50	periodic tryptophan protein 2	[more]
AT1G15440.2	2.5e-33	62.50	periodic tryptophan protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 145..271 e-value: 3.4E-7 score: 31.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..46
IPR027145	Periodic tryptophan protein 2	PANTHER	PTHR19858	WD40 REPEAT PROTEIN	coord: 155..271
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 152..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017683.1	Lag0017683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding